svn commit: r432959 - in head/science: . libgeodecomp libgeodecomp/files
Nikolai Lifanov
lifanov at FreeBSD.org
Tue Jan 31 23:38:00 UTC 2017
Author: lifanov
Date: Tue Jan 31 23:37:58 2017
New Revision: 432959
URL: https://svnweb.freebsd.org/changeset/ports/432959
Log:
add science/libgeodecomp - auto-parallelizing library for computer simulations
LibGeoDecomp (Library for Geometric Decomposition codes) is an
auto-parallelizing library for computer simulations. It is specifically targeted
computational science applications in the context of supercomputers and
heterogeneous systems. The library eases development of such tightly coupled
codes by essentially taking over the parallel programming: it handles both, the
parallelization itself and parameter tuning. This enables scientists to focus on
their simulation code, rather than the technical details of the parallel
computer.
PR: 213688
Submitted by: Kurt Kanzenbach <kurt at kmk-computers.de>
Reviewed by: matthew
Approved by: matthew (mentor)
Differential Revision: https://reviews.freebsd.org/D9390
Added:
head/science/libgeodecomp/
head/science/libgeodecomp/Makefile (contents, props changed)
head/science/libgeodecomp/distinfo (contents, props changed)
head/science/libgeodecomp/files/
head/science/libgeodecomp/files/patch-lib_libflatarray_src_aligned__allocator.hpp (contents, props changed)
head/science/libgeodecomp/files/patch-src_CMakeLists.txt (contents, props changed)
head/science/libgeodecomp/pkg-descr (contents, props changed)
head/science/libgeodecomp/pkg-plist (contents, props changed)
Modified:
head/science/Makefile
Modified: head/science/Makefile
==============================================================================
--- head/science/Makefile Tue Jan 31 21:25:30 2017 (r432958)
+++ head/science/Makefile Tue Jan 31 23:37:58 2017 (r432959)
@@ -70,6 +70,7 @@
SUBDIR += lamprop
SUBDIR += libaec
SUBDIR += libctl
+ SUBDIR += libgeodecomp
SUBDIR += libghemical
SUBDIR += libint
SUBDIR += libkml
Added: head/science/libgeodecomp/Makefile
==============================================================================
--- /dev/null 00:00:00 1970 (empty, because file is newly added)
+++ head/science/libgeodecomp/Makefile Tue Jan 31 23:37:58 2017 (r432959)
@@ -0,0 +1,43 @@
+# Created by: Kurt Kanzenbach <kurt at kmk-computers.de>
+# $FreeBSD$
+
+PORTNAME= libgeodecomp
+PORTVERSION= 0.4.0
+CATEGORIES= science devel
+MASTER_SITES= http://www.libgeodecomp.org/archive/
+
+MAINTAINER= kurt at kmk-computers.de
+COMMENT= LibGeoDecomp is an auto-parallelizing library for computer simulations
+
+LICENSE= BSL
+LICENSE_FILE= ${WRKSRC}/LICENSE
+
+LIB_DEPENDS= libboost_system.so:devel/boost-libs libboost_date_time.so:devel/boost-libs \
+ libboost_filesystem.so:devel/boost-libs
+
+USES= cmake:outsource compiler:c++11-lib
+USE_GCC= yes
+USE_LDCONFIG= yes
+
+CMAKE_ARGS= -DWITH_CUDA:BOOL=FALSE -DWITH_VISIT:BOOL=FALSE \
+ -DWITH_HPX:BOOL=FALSE -DWITH_OPENCL:BOOL=FALSE \
+ -DWITH_OPENCV:BOOL=FALSE -DWITH_TYPEMAPS=FALSE
+
+OPTIONS_DEFINE= MPI QT4 SILO SCOTCH
+OPTIONS_DEFAULT= MPI QT4 SILO SCOTCH
+
+MPI_LIB_DEPENDS= libmpich.so:net/mpich2
+MPI_CMAKE_BOOL= WITH_MPI
+
+QT4_USE= QT4=corelib,gui,opengl,qmake_build,moc_build,rcc_build,uic_build
+QT4_CMAKE_BOOL= WITH_QT
+
+SILO_DESC= Enable Silo dependend output
+SILO_LIB_DEPENDS= libsiloh5.so:science/silo
+SILO_CMAKE_BOOL= WITH_SILO
+
+SCOTCH_DESC= Enable graph partitioning based on Scotch/Scotch-PT
+SCOTCH_BUILD_DEPENDS= ${LOCALBASE}/lib/libscotch.a:cad/scotch
+SCOTCH_CMAKE_BOOL= WITH_SCOTCH
+
+.include <bsd.port.mk>
Added: head/science/libgeodecomp/distinfo
==============================================================================
--- /dev/null 00:00:00 1970 (empty, because file is newly added)
+++ head/science/libgeodecomp/distinfo Tue Jan 31 23:37:58 2017 (r432959)
@@ -0,0 +1,3 @@
+TIMESTAMP = 1476973737
+SHA256 (libgeodecomp-0.4.0.tar.gz) = f1a4fbc0c04952a148cbe186f36fc9e2307f7b0ecaf6960b56f2135ca3b8fa4e
+SIZE (libgeodecomp-0.4.0.tar.gz) = 1022767
Added: head/science/libgeodecomp/files/patch-lib_libflatarray_src_aligned__allocator.hpp
==============================================================================
--- /dev/null 00:00:00 1970 (empty, because file is newly added)
+++ head/science/libgeodecomp/files/patch-lib_libflatarray_src_aligned__allocator.hpp Tue Jan 31 23:37:58 2017 (r432959)
@@ -0,0 +1,16 @@
+--- lib/libflatarray/src/aligned_allocator.hpp.orig 2014-10-28 09:12:48 UTC
++++ lib/libflatarray/src/aligned_allocator.hpp
+@@ -8,13 +8,7 @@
+ #ifndef FLAT_ARRAY_ALIGNED_ALLOCATOR_HPP
+ #define FLAT_ARRAY_ALIGNED_ALLOCATOR_HPP
+
+-#ifdef __APPLE__
+ #include <cstddef>
+-#include <stdlib.h>
+-#else
+-#include <malloc.h>
+-#endif
+-
+ #include <memory>
+
+ namespace LibFlatArray {
Added: head/science/libgeodecomp/files/patch-src_CMakeLists.txt
==============================================================================
--- /dev/null 00:00:00 1970 (empty, because file is newly added)
+++ head/science/libgeodecomp/files/patch-src_CMakeLists.txt Tue Jan 31 23:37:58 2017 (r432959)
@@ -0,0 +1,11 @@
+--- src/CMakeLists.txt.orig 2016-10-17 18:06:32 UTC
++++ src/CMakeLists.txt
+@@ -575,7 +575,7 @@ Version: ${PACKAGE_VERSION}
+ Libs: ${INSTALLER_LINK_FLAGS}
+ Cflags: -I${CMAKE_INSTALL_PREFIX}/include ${PKG_CONFIG_INCLUDE_FLAGS}
+ ")
+-install(FILES "${CMAKE_BINARY_DIR}/${PACKAGE_NAME}.pc" DESTINATION "${LIB_DIR}/pkgconfig")
++install(FILES "${CMAKE_BINARY_DIR}/${PACKAGE_NAME}.pc" DESTINATION "libdata/pkgconfig")
+
+ set(ConfigPackageLocation lib/cmake/${PACKAGE_NAME})
+
Added: head/science/libgeodecomp/pkg-descr
==============================================================================
--- /dev/null 00:00:00 1970 (empty, because file is newly added)
+++ head/science/libgeodecomp/pkg-descr Tue Jan 31 23:37:58 2017 (r432959)
@@ -0,0 +1,10 @@
+LibGeoDecomp (Library for Geometric Decomposition codes) is an
+auto-parallelizing library for computer simulations. It is specifically targeted
+computational science applications in the context of supercomputers and
+heterogeneous systems. The library eases development of such tightly coupled
+codes by essentially taking over the parallel programming: it handles both, the
+parallelization itself and parameter tuning. This enables scientists to focus on
+their simulation code, rather than the technical details of the parallel
+computer.
+
+WWW: http://www.libgeodecomp.org/
Added: head/science/libgeodecomp/pkg-plist
==============================================================================
--- /dev/null 00:00:00 1970 (empty, because file is newly added)
+++ head/science/libgeodecomp/pkg-plist Tue Jan 31 23:37:58 2017 (r432959)
@@ -0,0 +1,195 @@
+include/libflatarray/aggregated_member_size.hpp
+include/libflatarray/aligned_allocator.hpp
+include/libflatarray/api_traits.hpp
+include/libflatarray/coord.hpp
+include/libflatarray/cuda_allocator.hpp
+include/libflatarray/detail/dual_callback_helper.hpp
+include/libflatarray/detail/get_set_instance_functor.hpp
+include/libflatarray/detail/load_save_functor.hpp
+include/libflatarray/detail/macros.hpp
+include/libflatarray/detail/offset.hpp
+include/libflatarray/detail/set_byte_size_functor.hpp
+include/libflatarray/detail/short_vec_avx_float_8.hpp
+include/libflatarray/detail/short_vec_qpx_double_4.hpp
+include/libflatarray/detail/short_vec_sse_double_8.hpp
+include/libflatarray/detail/short_vec_sse_float_16.hpp
+include/libflatarray/detail/short_vec_sse_float_8.hpp
+include/libflatarray/detail/sqrt_reference.hpp
+include/libflatarray/flat_array.hpp
+include/libflatarray/macros.hpp
+include/libflatarray/member_ptr_to_offset.hpp
+include/libflatarray/number_of_members.hpp
+include/libflatarray/short_vec.hpp
+include/libflatarray/soa_accessor.hpp
+include/libflatarray/soa_array.hpp
+include/libflatarray/soa_grid.hpp
+include/libflatarray/testbed/benchmark.hpp
+include/libflatarray/testbed/cpu_benchmark.hpp
+include/libflatarray/testbed/evaluate.hpp
+include/libflatarray/testbed/gpu_benchmark.hpp
+include/libgeodecomp.h
+include/libgeodecomp/communication/mpilayer.h
+include/libgeodecomp/communication/patchlink.h
+include/libgeodecomp/communication/serialization.h
+include/libgeodecomp/communication/typemaps.h
+include/libgeodecomp/config.h
+include/libgeodecomp/geometry/coord.h
+include/libgeodecomp/geometry/coordbox.h
+include/libgeodecomp/geometry/cudaregion.h
+include/libgeodecomp/geometry/fixedcoord.h
+include/libgeodecomp/geometry/floatcoord.h
+include/libgeodecomp/geometry/partitionmanager.h
+include/libgeodecomp/geometry/partitions/checkerboardingpartition.h
+include/libgeodecomp/geometry/partitions/hilbertpartition.h
+include/libgeodecomp/geometry/partitions/hindexingpartition.h
+include/libgeodecomp/geometry/partitions/partition.h
+include/libgeodecomp/geometry/partitions/ptscotchpartition.h
+include/libgeodecomp/geometry/partitions/recursivebisectionpartition.h
+include/libgeodecomp/geometry/partitions/scotchpartition.h
+include/libgeodecomp/geometry/partitions/spacefillingcurve.h
+include/libgeodecomp/geometry/partitions/stripingpartition.h
+include/libgeodecomp/geometry/partitions/zcurvepartition.h
+include/libgeodecomp/geometry/region.h
+include/libgeodecomp/geometry/regionstreakiterator.h
+include/libgeodecomp/geometry/stencils.h
+include/libgeodecomp/geometry/streak.h
+include/libgeodecomp/geometry/topologies.h
+include/libgeodecomp/geometry/voronoimesher.h
+include/libgeodecomp/io/asciiwriter.h
+include/libgeodecomp/io/bovwriter.h
+include/libgeodecomp/io/collectingwriter.h
+include/libgeodecomp/io/hpxwritercollector.h
+include/libgeodecomp/io/hpxwritersink.h
+include/libgeodecomp/io/hpxwritersinkserver.h
+include/libgeodecomp/io/imagepainter.h
+include/libgeodecomp/io/initializer.h
+include/libgeodecomp/io/ioexception.h
+include/libgeodecomp/io/logger.h
+include/libgeodecomp/io/memorywriter.h
+include/libgeodecomp/io/mockinitializer.h
+include/libgeodecomp/io/mocksteerer.h
+include/libgeodecomp/io/mockwriter.h
+include/libgeodecomp/io/mpiio.h
+include/libgeodecomp/io/mpiioinitializer.h
+include/libgeodecomp/io/mpiiowriter.h
+include/libgeodecomp/io/parallelmemorywriter.h
+include/libgeodecomp/io/parallelmpiiowriter.h
+include/libgeodecomp/io/paralleltestwriter.h
+include/libgeodecomp/io/parallelwriter.h
+include/libgeodecomp/io/plotter.h
+include/libgeodecomp/io/ppmwriter.h
+include/libgeodecomp/io/qtwidgetwriter.h
+include/libgeodecomp/io/remotesteerer.h
+include/libgeodecomp/io/serialbovwriter.h
+include/libgeodecomp/io/silowriter.h
+include/libgeodecomp/io/simplecellplotter.h
+include/libgeodecomp/io/simpleinitializer.h
+include/libgeodecomp/io/steerer.h
+include/libgeodecomp/io/testinitializer.h
+include/libgeodecomp/io/teststeerer.h
+include/libgeodecomp/io/testwriter.h
+include/libgeodecomp/io/tracingwriter.h
+include/libgeodecomp/io/visitwriter.h
+include/libgeodecomp/io/writer.h
+include/libgeodecomp/loadbalancer/biasbalancer.h
+include/libgeodecomp/loadbalancer/loadbalancer.h
+include/libgeodecomp/loadbalancer/mockbalancer.h
+include/libgeodecomp/loadbalancer/noopbalancer.h
+include/libgeodecomp/loadbalancer/oozebalancer.h
+include/libgeodecomp/loadbalancer/randombalancer.h
+include/libgeodecomp/loadbalancer/tracingbalancer.h
+include/libgeodecomp/misc/apitraits.h
+include/libgeodecomp/misc/chronometer.h
+include/libgeodecomp/misc/clonable.h
+include/libgeodecomp/misc/color.h
+include/libgeodecomp/misc/cudautil.h
+include/libgeodecomp/misc/fpscounter.h
+include/libgeodecomp/misc/math.h
+include/libgeodecomp/misc/mpitest.h
+include/libgeodecomp/misc/nonpodtestcell.h
+include/libgeodecomp/misc/optimizer.h
+include/libgeodecomp/misc/palette.h
+include/libgeodecomp/misc/patternoptimizer.h
+include/libgeodecomp/misc/quickpalette.h
+include/libgeodecomp/misc/random.h
+include/libgeodecomp/misc/scopedtimer.h
+include/libgeodecomp/misc/simplexoptimizer.h
+include/libgeodecomp/misc/simulationfactory.h
+include/libgeodecomp/misc/simulationparameters.h
+include/libgeodecomp/misc/stdcontaineroverloads.h
+include/libgeodecomp/misc/stringops.h
+include/libgeodecomp/misc/stringvec.h
+include/libgeodecomp/misc/tempfile.h
+include/libgeodecomp/misc/testcell.h
+include/libgeodecomp/misc/testhelper.h
+include/libgeodecomp/parallelization/cacheblockingsimulator.h
+include/libgeodecomp/parallelization/cudasimulator.h
+include/libgeodecomp/parallelization/distributedsimulator.h
+include/libgeodecomp/parallelization/hiparsimulator.h
+include/libgeodecomp/parallelization/hiparsimulator/commonstepper.h
+include/libgeodecomp/parallelization/hiparsimulator/cudastepper.h
+include/libgeodecomp/parallelization/hiparsimulator/multicorestepper.h
+include/libgeodecomp/parallelization/hiparsimulator/offsethelper.h
+include/libgeodecomp/parallelization/hiparsimulator/openclstepper.h
+include/libgeodecomp/parallelization/hiparsimulator/parallelwriteradapter.h
+include/libgeodecomp/parallelization/hiparsimulator/steereradapter.h
+include/libgeodecomp/parallelization/hiparsimulator/stepper.h
+include/libgeodecomp/parallelization/hiparsimulator/updategroup.h
+include/libgeodecomp/parallelization/hiparsimulator/vanillastepper.h
+include/libgeodecomp/parallelization/hpxsimulator.h
+include/libgeodecomp/parallelization/hpxsimulator/createupdategroups.h
+include/libgeodecomp/parallelization/hpxsimulator/hpxstepper.h
+include/libgeodecomp/parallelization/hpxsimulator/patchlink.h
+include/libgeodecomp/parallelization/hpxsimulator/updategroup.h
+include/libgeodecomp/parallelization/hpxsimulator/updategroupserver.h
+include/libgeodecomp/parallelization/mocksimulator.h
+include/libgeodecomp/parallelization/monolithicsimulator.h
+include/libgeodecomp/parallelization/serialsimulator.h
+include/libgeodecomp/parallelization/simulator.h
+include/libgeodecomp/parallelization/stripingsimulator.h
+include/libgeodecomp/storage/boxcell.h
+include/libgeodecomp/storage/collectioninterface.h
+include/libgeodecomp/storage/containercell.h
+include/libgeodecomp/storage/coordmap.h
+include/libgeodecomp/storage/cudaarray.h
+include/libgeodecomp/storage/cudagrid.h
+include/libgeodecomp/storage/dataaccessor.h
+include/libgeodecomp/storage/defaultfilter.h
+include/libgeodecomp/storage/displacedgrid.h
+include/libgeodecomp/storage/filter.h
+include/libgeodecomp/storage/filterbase.h
+include/libgeodecomp/storage/fixedarray.h
+include/libgeodecomp/storage/fixedneighborhood.h
+include/libgeodecomp/storage/grid.h
+include/libgeodecomp/storage/gridbase.h
+include/libgeodecomp/storage/gridtypeselector.h
+include/libgeodecomp/storage/gridvecconv.h
+include/libgeodecomp/storage/image.h
+include/libgeodecomp/storage/linepointerassembly.h
+include/libgeodecomp/storage/linepointerneighborhood.h
+include/libgeodecomp/storage/linepointerupdatefunctor.h
+include/libgeodecomp/storage/meshlessadapter.h
+include/libgeodecomp/storage/mockpatchaccepter.h
+include/libgeodecomp/storage/multicontainercell.h
+include/libgeodecomp/storage/neighborhoodadapter.h
+include/libgeodecomp/storage/neighborhooditerator.h
+include/libgeodecomp/storage/patchaccepter.h
+include/libgeodecomp/storage/patchbuffer.h
+include/libgeodecomp/storage/patchbufferfixed.h
+include/libgeodecomp/storage/patchprovider.h
+include/libgeodecomp/storage/pointerneighborhood.h
+include/libgeodecomp/storage/selector.h
+include/libgeodecomp/storage/sellcsigmasparsematrixcontainer.h
+include/libgeodecomp/storage/serializationbuffer.h
+include/libgeodecomp/storage/simplefilter.h
+include/libgeodecomp/storage/soagrid.h
+include/libgeodecomp/storage/unstructuredgrid.h
+include/libgeodecomp/storage/updatefunctor.h
+include/libgeodecomp/storage/updatefunctortestbase.h
+include/libgeodecomp/storage/vanillaupdatefunctor.h
+lib/cmake/libgeodecomp/libgeodecomp-targets-%%CMAKE_BUILD_TYPE%%.cmake
+lib/cmake/libgeodecomp/libgeodecomp-targets.cmake
+lib/cmake/libgeodecomp/libgeodecompConfig.cmake
+lib/cmake/libgeodecomp/libgeodecompConfigVersion.cmake
+lib/libgeodecomp.so
+libdata/pkgconfig/libgeodecomp.pc
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