svn commit: r561487 - in head/science/v_sim: . files
Thierry Thomas
thierry at FreeBSD.org
Wed Jan 13 16:30:09 UTC 2021
Author: thierry
Date: Wed Jan 13 16:30:07 2021
New Revision: 561487
URL: https://svnweb.freebsd.org/changeset/ports/561487
Log:
Upgrade to 3.8.0.
Changelog is available at <https://gitlab.com/l_sim/v_sim/-/blob/staging/ChangeLog.en>.
Added:
head/science/v_sim/files/patch-Documentation_reference_Makefile.am (contents, props changed)
head/science/v_sim/files/patch-configure.ac (contents, props changed)
head/science/v_sim/files/patch-lib_plug-ins_abinit_ab__symmetry.c (contents, props changed)
head/science/v_sim/files/patch-m4_libxc.m4 (contents, props changed)
head/science/v_sim/files/patch-src_coreTools_atoms__yaml.c (contents, props changed)
Deleted:
head/science/v_sim/files/patch-lib_plug-ins_Makefile.in
Modified:
head/science/v_sim/Makefile
head/science/v_sim/distinfo
head/science/v_sim/pkg-descr
head/science/v_sim/pkg-plist
Modified: head/science/v_sim/Makefile
==============================================================================
--- head/science/v_sim/Makefile Wed Jan 13 16:13:24 2021 (r561486)
+++ head/science/v_sim/Makefile Wed Jan 13 16:30:07 2021 (r561487)
@@ -2,10 +2,9 @@
# $FreeBSD$
PORTNAME= v_sim
-PORTVERSION= 3.7.2
-PORTREVISION= 12
+PORTVERSION= 3.8.0
CATEGORIES= science
-MASTER_SITES= http://inac.cea.fr/sp2m/L_Sim/V_Sim/download/
+MASTER_SITES= https://gitlab.com/l_sim/${PORTNAME}/-/archive/${PORTVERSION}/
MAINTAINER= thierry at FreeBSD.org
COMMENT= Visualization of atomic structures
@@ -15,26 +14,56 @@ LICENSE_NAME= CeCILL
LICENSE_FILE= ${WRKSRC}/COPYING
LICENSE_PERMS= dist-mirror dist-sell pkg-mirror pkg-sell auto-accept
+BUILD_DEPENDS= p5-XML-LibXML>0:textproc/p5-XML-LibXML \
+ libarchive>0:archivers/libarchive \
+ xcrysden:science/xcrysden \
+ bash:shells/bash
LIB_DEPENDS= libfontconfig.so:x11-fonts/fontconfig \
+ libopenbabel.so:science/openbabel \
libfreetype.so:print/freetype2 \
- libftgl.so:graphics/ftgl
+ libyaml.so:textproc/libyaml \
+ libnetcdf.so:science/netcdf \
+ libmsym.so:science/libmsym \
+ libftgl.so:graphics/ftgl \
+ libxc.so:science/libxc
+RUN_DEPENDS= ${PYNUMPY} \
+ xcrysden:science/xcrysden \
+ libarchive>0:archivers/libarchive \
+ ${PYTHON_PKGNAMEPREFIX}gobject3>0:devel/py-gobject3@${PY_FLAVOR} \
+ ${PYTHON_PKGNAMEPREFIX}matplotlib>0:math/py-matplotlib@${PY_FLAVOR}
-USES= compiler:c11 fortran gl gmake gnome libtool localbase:ldflags \
- pkgconfig tar:bzip2 xorg
+USES= autoreconf blaslapack compiler:c11 fortran gl gmake gnome \
+ libtool:keepla localbase:ldflags pkgconfig python:3.6+ \
+ shebangfix tar:bzip2 xorg
+SHEBANG_GLOB= *.py
USE_XORG= x11
-USE_GNOME= gtk20 intltool cairo
+USE_GNOME= cairo gtk30 intltool introspection
USE_GL= gl glu
GNU_CONFIGURE= yes
-CONFIGURE_ARGS= --disable-gtk-doc --with-html-dir=${PREFIX}/share/doc --disable-python-module
+CONFIGURE_SHELL=${LOCALBASE}/bin/bash
+CONFIGURE_ARGS= --htmldir=${PREFIX}/share/doc --with-openbabel \
+ --with-netcdf=${LOCALBASE} --with-etsf-file-format \
+ --with-xsf --with-cube --with-msym=${LOCALBASE} \
+ --with-msym-inc=-I${LOCALBASE}/include/libmsym \
+ --with-libxc=${LOCALBASE} --enable-python-module
CPPFLAGS+= ${CFLAGS}
USE_LDCONFIG= yes
INSTALLS_ICONS= yes
-INSTALL_TARGET= install-strip
OPTIONS_DEFINE= DOCS NLS EXAMPLES
+.if defined(WITH_DEBUG)
+CONFIGURE_ARGS+=--enable-debug-messages
+.endif
+
.include <bsd.port.options.mk>
+.if ${ARCH:Mamd64*}
+BUILD_DEPENDS+= abinit:science/abinit
+RUN_DEPENDS+= abinit:science/abinit
+CONFIGURE_ARGS+=--with-abinit
+.endif
+
.if ${PORT_OPTIONS:MNLS}
USES+= gettext
PLIST_SUB+= NLS=""
@@ -43,45 +72,23 @@ USES+= gettext-tools
PLIST_SUB+= NLS="@comment "
.endif
-.if !defined(WITHOUT_CDF)
-LIB_DEPENDS+= libnetcdf.so:science/netcdf
-CONFIGURE_ARGS+=--with-netcdf=${LOCALBASE}
-PLIST_SUB+= CDF=""
-.else
-CONFIGURE_ARGS+=--without-netcdf
-PLIST_SUB+= CDF="@comment "
-.endif
-
-.if !defined(WITHOUT_BABEL)
-LIB_DEPENDS+= libopenbabel.so:science/openbabel
-CONFIGURE_ARGS+=--with-openbabel
-PLIST_SUB+= BABEL=""
-.else
-CONFIGURE_ARGS+=--without-openbabel
-PLIST_SUB+= BABEL="@comment "
-.endif
-
pre-configure:
- @${REINPLACE_CMD} -e 's|$$datadir/doc/$$PACKAGE/examples|${EXAMPLESDIR}|' \
- -e 's| CFLAGS="-O2"|#CFLAGS="-O2"|;s|Werror ansi pedantic-errors||' \
- -e 's| FCFLAGS="-O2"|FCFLAGS=${FFLAGS}|;s|$${docdir}/examples|${EXAMPLESDIR}|' \
- ${WRKSRC}/${CONFIGURE_SCRIPT}
+ ${REINPLACE_CMD} -e 's|$${docdir}/examples|${EXAMPLESDIR}|' \
+ ${WRKSRC}/configure.ac
+ ${REINPLACE_CMD} -e 's|print sys.prefix|print (sys.prefix)|' \
+ -e 's|print sys.exec_prefix|print (sys.exec_prefix)|' \
+ ${WRKSRC}/m4/python.m4
pre-configure-NLS-off:
- @${REINPLACE_CMD} -e '/^ po /d' \
- ${WRKSRC}/Makefile.in
+ ${REINPLACE_CMD} -e '/^ po /d' ${WRKSRC}/Makefile.am
pre-configure-DOCS-off:
- @${REINPLACE_CMD} -e '/^ Documentation/d' \
- ${WRKSRC}/Makefile.in
+ ${REINPLACE_CMD} -e '/^ Documentation/d' ${WRKSRC}/Makefile.am
pre-configure-EXAMPLES-off:
- @${REINPLACE_CMD} -e '/^ examples/d' \
- ${WRKSRC}/Makefile.in
- @${FIND} ${WRKSRC}/lib/plug-ins -name Makefile.in | ${XARGS} \
- ${REINPLACE_CMD} -e \
- 's|install-v_simexamplesDATA install-v_simpixmapsDATA|install-v_simpixmapsDATA|'
- @${REINPLACE_CMD} -e 's|: install-v_simexamplesDATA|:|' \
- ${WRKSRC}/lib/python/Makefile.in
+ ${REINPLACE_CMD} -e '/^ examples/d' \
+ ${WRKSRC}/Makefile.am
+ ${REINPLACE_CMD} -e 's|: install-v_simexamplesDATA|:|' \
+ ${WRKSRC}/lib/python/Makefile.am
.include <bsd.port.mk>
Modified: head/science/v_sim/distinfo
==============================================================================
--- head/science/v_sim/distinfo Wed Jan 13 16:13:24 2021 (r561486)
+++ head/science/v_sim/distinfo Wed Jan 13 16:30:07 2021 (r561487)
@@ -1,2 +1,3 @@
-SHA256 (v_sim-3.7.2.tar.bz2) = 9212e6321d8ad8188529b9fab543268489e2f37d96e3ae55fa90d47d8ba4e70c
-SIZE (v_sim-3.7.2.tar.bz2) = 3103269
+TIMESTAMP = 1608928526
+SHA256 (v_sim-3.8.0.tar.bz2) = af23f0eac641017d0ce52d92f83a8bca8f07776c4fac40b1970f073d88096f1f
+SIZE (v_sim-3.8.0.tar.bz2) = 5957293
Added: head/science/v_sim/files/patch-Documentation_reference_Makefile.am
==============================================================================
--- /dev/null 00:00:00 1970 (empty, because file is newly added)
+++ head/science/v_sim/files/patch-Documentation_reference_Makefile.am Wed Jan 13 16:30:07 2021 (r561487)
@@ -0,0 +1,34 @@
+--- Documentation/reference/Makefile.am.orig 2020-07-07 14:26:13 UTC
++++ Documentation/reference/Makefile.am
+@@ -81,11 +81,11 @@ GTKDOC_LIBS= \
+ @GTKS_LIBS@ @GLU_LIBS@ @EXTRA_LDFLAGS@ @EXTRA_LIBS@
+
+ # This includes the standard gtk-doc make rules, copied by gtkdocize.
+-include $(srcdir)/gtk-doc.make
++#include $(srcdir)/gtk-doc.make
+
+ # Other files to distribute
+ # e.g. EXTRA_DIST += version.xml.in
+-EXTRA_DIST += version.in
++EXTRA_DIST = version.in
+
+ # Files not to distribute
+ # for --rebuild-types in $(SCAN_OPTIONS), e.g. $(DOC_MODULE).types
+@@ -93,11 +93,11 @@ EXTRA_DIST += version.in
+ DISTCLEANFILES = $(DOC_MODULE).types $(DOC_MODULE)-sections.txt
+
+ # Comment this out if you want your docs-status tested during 'make check'
+-if ENABLE_GTK_DOC
+-TESTS_ENVIRONMENT = \
+- DOC_MODULE=$(DOC_MODULE) DOC_MAIN_SGML_FILE=$(DOC_MAIN_SGML_FILE) \
+- SRCDIR=$(abs_srcdir) BUILDDIR=$(abs_builddir)
+-TESTS = $(GTKDOC_CHECK)
+-endif
++#if ENABLE_GTK_DOC
++#TESTS_ENVIRONMENT = \
++# DOC_MODULE=$(DOC_MODULE) DOC_MAIN_SGML_FILE=$(DOC_MAIN_SGML_FILE) \
++# SRCDIR=$(abs_srcdir) BUILDDIR=$(abs_builddir)
++#TESTS = $(GTKDOC_CHECK)
++#endif
+
+ #-include $(top_srcdir)/git.mk
Added: head/science/v_sim/files/patch-configure.ac
==============================================================================
--- /dev/null 00:00:00 1970 (empty, because file is newly added)
+++ head/science/v_sim/files/patch-configure.ac Wed Jan 13 16:30:07 2021 (r561487)
@@ -0,0 +1,61 @@
+--- configure.ac.orig 2020-07-07 14:26:13 UTC
++++ configure.ac
+@@ -244,7 +244,7 @@ AC_ARG_ENABLE(python-module, AS_HELP_STRING([--enable-
+ if test -n "$enable_python" -a "$enable_python" != "no" ; then
+ AM_PATH_PYTHON(2.3.5)
+ AM_CHECK_PYTHON_HEADERS(,[AC_MSG_ERROR(could not find Python headers)])
+- py_prefix=`$PYTHON -c "import sys; print sys.prefix"`
++ py_prefix=`$PYTHON -c "import sys; print (sys.prefix)"`
+ PYTHON_INCLUDES="-I${py_prefix}/include/python${PYTHON_VERSION}"
+
+ PKG_CHECK_MODULES(PYGTK, pygobject-2.0 pygtk-2.0, [have_pygtk=yes], [have_pygtk=no])
+@@ -269,7 +269,6 @@ if test "$with_debug_messages" = "yes" ; then
+ fi
+
+ dnl Building the doc
+-GTK_DOC_CHECK([1.3])
+
+
+ dnl Test for plug-ins compilation
+@@ -423,9 +422,9 @@ if test "x$enable_introspection" = "xyes" ; then
+ dnl Add Python support for the PythonGI plug-in.
+ AM_PATH_PYTHON(2.3)
+ AM_CHECK_PYTHON_HEADERS(,[AC_MSG_ERROR(could not find Python headers)])
+- PYTHON_INCLUDES="`python-config --cflags`"
++ PYTHON_INCLUDES="`${PYTHON}-config --cflags`"
+ AC_SUBST(PYTHON_INCLUDES)
+- PYTHON_LIBS="`python-config --libs`"
++ PYTHON_LIBS="`${PYTHON}-config --libs`"
+ AC_SUBST(PYTHON_LIBS)
+
+ AC_MSG_CHECKING(for pygobject overrides directory)
+@@ -434,9 +433,10 @@ if test "x$enable_introspection" = "xyes" ; then
+ if test "x$overrides_dir" = "x" ; then
+ overrides_dir="${pyexecdir}/gi/overrides"
+ fi
+- if ! test -w $overrides_dir ; then
+- overrides_dir=${libdir}/python$PYTHON_VERSION/dist-packages/gi/overrides
+- fi
++ # Do not test -w $overrides_dir to allow build as non-root
++ #if ! test -w $overrides_dir ; then
++ # overrides_dir=${libdir}/python$PYTHON_VERSION/dist-packages/gi/overrides
++ #fi
+ AC_MSG_RESULT($overrides_dir)
+ else
+ overrides_dir=${libdir}/python$PYTHON_VERSION/dist-packages/gi/overrides
+@@ -446,12 +446,12 @@ AM_CONDITIONAL([WITH_GOBJECT_INTROSPECTION], [test "x$
+ dnl AC_PROG_CC set the CC variable and detect if we use the GNU compiler
+ dnl We now append some various CFLAGS depending on platform and choice
+ dnl of the user.
+-AC_ARG_WITH(strict-cflags, AS_HELP_STRING([--with-strict-cflags], [if set or absent some correctness cflags are appended to the CFLAGS variable. Appended values dependent on the platform and code branch (default on Unix for development is Wall Wno-unused W Werror ansi pedantic-errors).]), [STRICT_CFLAGS=$withval], [STRICT_CFLAGS="no"])
++AC_ARG_WITH(strict-cflags, AS_HELP_STRING([--with-strict-cflags], [if set or absent some correctness cflags are appended to the CFLAGS variable. Appended values dependent on the platform and code branch (default on Unix for development is Wall Wno-unused W ansi ).]), [STRICT_CFLAGS=$withval], [STRICT_CFLAGS="no"])
+ flags='Wall W ansi'
+ flags_cpp='Wall W ansi'
+ if test "$GCC" = "yes" -a "$STRICT_CFLAGS" = "yes"; then
+- flags=$flags' Werror Wpedantic std=c99'
+- flags_cpp=$flags_cpp' Werror Wpedantic'
++ flags=$flags' std=c99'
++ flags_cpp=$flags_cpp' '
+ fi
+ for fl in $flags ; do
+ case " $CFLAGS " in
Added: head/science/v_sim/files/patch-lib_plug-ins_abinit_ab__symmetry.c
==============================================================================
--- /dev/null 00:00:00 1970 (empty, because file is newly added)
+++ head/science/v_sim/files/patch-lib_plug-ins_abinit_ab__symmetry.c Wed Jan 13 16:30:07 2021 (r561487)
@@ -0,0 +1,59 @@
+--- lib/plug-ins/abinit/ab_symmetry.c.orig 2020-07-07 14:26:13 UTC
++++ lib/plug-ins/abinit/ab_symmetry.c
+@@ -458,7 +458,7 @@ gpointer startThreadSymmetry(gpointer data _U_)
+ char *spGrp;
+ double box[3][3], genAfm[3], *xred;
+ int i, *typat, grpId, grpMagnId;
+- AbError errno;
++ AbError error;
+ VisuNodeArrayIter iter;
+
+ AbinitData *dt;
+@@ -492,13 +492,13 @@ gpointer startThreadSymmetry(gpointer data _U_)
+ /* Ask for the calculation of the symmetries. */
+ DBG_fprintf(stderr, "AB symmetry(%p): Ready to get symmetries from ABINIT.\n",
+ (gpointer)g_thread_self());
+- errno = ab_symmetry_get_group(dt->sym, &spGrp, &grpId,
++ error = ab_symmetry_get_group(dt->sym, &spGrp, &grpId,
+ &grpMagnId, genAfm);
+ DBG_fprintf(stderr, "AB symmetry(%p): return from ABINIT (%d).\n",
+- (gpointer)g_thread_self(), errno);
+- if (errno == AB_NO_ERROR || errno == AB_ERROR_SYM_BRAVAIS_XRED)
++ (gpointer)g_thread_self(), error);
++ if (error == AB_NO_ERROR || errno == AB_ERROR_SYM_BRAVAIS_XRED)
+ g_free(spGrp);
+- else if (errno != AB_ERROR_SYM_NOT_PRIMITIVE)
++ else if (error != AB_ERROR_SYM_NOT_PRIMITIVE)
+ dt->error = g_error_new(TOOL_FILE_FORMAT_ERROR, TOOL_FILE_FORMAT_ERROR_METHOD,
+ "An error occured in ABINIT plug-in.");
+ abinit_mutexUnlock();
+@@ -517,7 +517,7 @@ static void updateSymmetries(VisuData *dataObj, gdoubl
+ gchar *bravais[7] = {"triclinic", "monoclinic", "orthorhombic",
+ "tetragonal", "trigonal", "hexagonal", "cubic"};
+ gchar *center[7] = {"F", "F", "I", "P", "A", "B", "C"};
+- AbError errno;
++ AbError error;
+ #ifdef G_THREADS_ENABLED
+ GThread *ld_thread;
+ #endif
+@@ -571,9 +571,9 @@ static void updateSymmetries(VisuData *dataObj, gdoubl
+
+ /* We get then the space group. */
+ DBG_fprintf(stderr, "AB symmetry: get group.\n");
+- errno = ab_symmetry_get_group(sym, &spGrp, &grpId,
++ error = ab_symmetry_get_group(sym, &spGrp, &grpId,
+ &grpMagnId, genAfm);
+- if (errno == AB_NO_ERROR || errno == AB_ERROR_SYM_BRAVAIS_XRED)
++ if (error == AB_NO_ERROR || errno == AB_ERROR_SYM_BRAVAIS_XRED)
+ {
+ str = g_strdup_printf("%s (#%d)", spGrp, grpId);
+ gtk_label_set_text(GTK_LABEL(lblSymId), str);
+@@ -629,7 +629,7 @@ static void updateSymmetries(VisuData *dataObj, gdoubl
+
+ /* If the bravais lattice doesn't match with the xred bravais
+ lattice, we print a message. */
+- if (errno == AB_ERROR_SYM_BRAVAIS_XRED)
++ if (error == AB_ERROR_SYM_BRAVAIS_XRED)
+ gtk_widget_show(lblSymWarning);
+ else
+ gtk_widget_hide(lblSymWarning);
Added: head/science/v_sim/files/patch-m4_libxc.m4
==============================================================================
--- /dev/null 00:00:00 1970 (empty, because file is newly added)
+++ head/science/v_sim/files/patch-m4_libxc.m4 Wed Jan 13 16:30:07 2021 (r561487)
@@ -0,0 +1,22 @@
+--- m4/libxc.m4.orig 2020-07-07 14:26:13 UTC
++++ m4/libxc.m4
+@@ -57,17 +57,13 @@ AC_DEFUN([AC_CHECK_LIBXC],
+
+ LIBS="$LIBS -lxc"
+ AC_MSG_CHECKING([for LIBXC library])
+- AC_LINK_IFELSE([[
+-program main
+-
+- call xc_f90_family_from_id()
+-end]], ac_libxc_ok=yes, ac_libxc_ok=no)
++ ac_libxc_ok=yes
+ AC_MSG_RESULT([$ac_libxc_ok])
+ LIBS="$LIBS_SVG"
+ LDFLAGS="$LDFLAGS_SVG"
+ FCFLAGS="$FCFLAGS_SVG"
+ if test "$ac_libxc_ok" = "yes"; then
+- LIBXC_LIBS="-lxc"
++ LIBXC_LIBS="-lxc -lxcf90"
+ AS_IF([test -n "$LIBXC_PATH_LIBDIR"], [LIBXC_LIBS="-L$LIBXC_PATH_LIBDIR $LIBXC_LIBS"])
+ AC_SUBST([LIBXC_LIBS])
+ fi
Added: head/science/v_sim/files/patch-src_coreTools_atoms__yaml.c
==============================================================================
--- /dev/null 00:00:00 1970 (empty, because file is newly added)
+++ head/science/v_sim/files/patch-src_coreTools_atoms__yaml.c Wed Jan 13 16:30:07 2021 (r561487)
@@ -0,0 +1,22 @@
+--- src/coreTools/atoms_yaml.c.orig 2020-07-07 14:26:13 UTC
++++ src/coreTools/atoms_yaml.c
+@@ -1270,19 +1270,7 @@ static int posinp_yaml_forces(yaml_parser_t *parser, P
+
+ return done;
+ }
+-#if SYSTEM_X11 == 1
+-static char* strdup(const char *src)
+-{
+- char *dest;
+- size_t ln;
+
+- ln = strlen(src);
+- dest = malloc(sizeof(char) * (ln + 1));
+- memcpy(dest, src, sizeof(char) * ln);
+- dest[ln] = '\0';
+- return dest;
+-}
+-#endif
+ static int posinp_yaml_external_potential(const PosinpDict *dict, PosinpAtoms *atoms, char **message)
+ {
+ int done;
Modified: head/science/v_sim/pkg-descr
==============================================================================
--- head/science/v_sim/pkg-descr Wed Jan 13 16:13:24 2021 (r561486)
+++ head/science/v_sim/pkg-descr Wed Jan 13 16:30:07 2021 (r561487)
@@ -6,4 +6,4 @@ choose the view, the size of the atoms, their color, t
type of fog... Much of it is detailled in the user guide. Moreover V_Sim allows
to export the view as image in GIF, PS or more formats.
-WWW: http://inac.cea.fr/L_Sim/V_Sim/
+WWW: https://gitlab.com/l_sim/v_sim
Modified: head/science/v_sim/pkg-plist
==============================================================================
--- head/science/v_sim/pkg-plist Wed Jan 13 16:13:24 2021 (r561486)
+++ head/science/v_sim/pkg-plist Wed Jan 13 16:30:07 2021 (r561487)
@@ -1,171 +1,67 @@
bin/v_sim
+lib/girepository-1.0/v_sim-3.8.typelib
lib/libv_sim-3.a
+lib/libv_sim-3.la
lib/libv_sim-3.so
-lib/libv_sim-3.so.7
-lib/libv_sim-3.so.7.0.0
-%%BABEL%%lib/v_sim/plug-ins/libobloader.a
-%%BABEL%%lib/v_sim/plug-ins/libobloader.so
-%%BABEL%%lib/v_sim/plug-ins/libobloader.so.7
-%%BABEL%%lib/v_sim/plug-ins/libobloader.so.7.0.0
-%%PORTDOCS%%man/man1/v_sim.1.gz
+lib/libv_sim-3.so.8
+lib/libv_sim-3.so.8.0.0
+%%PYTHON_SITELIBDIR%%/gi/overrides/__pycache__/v_sim.cpython-37.opt-1.pyc
+%%PYTHON_SITELIBDIR%%/gi/overrides/__pycache__/v_sim.cpython-37.pyc
+%%PYTHON_SITELIBDIR%%/gi/overrides/v_sim.py
+lib/v_sim/plug-ins/libabinit.a
+lib/v_sim/plug-ins/libabinit.la
+lib/v_sim/plug-ins/libabinit.so
+lib/v_sim/plug-ins/libabinit.so.8
+lib/v_sim/plug-ins/libabinit.so.8.0.0
+lib/v_sim/plug-ins/libarchives.a
+lib/v_sim/plug-ins/libarchives.la
+lib/v_sim/plug-ins/libarchives.so
+lib/v_sim/plug-ins/libarchives.so.8
+lib/v_sim/plug-ins/libarchives.so.8.0.0
+lib/v_sim/plug-ins/libcube.a
+lib/v_sim/plug-ins/libcube.la
+lib/v_sim/plug-ins/libcube.so
+lib/v_sim/plug-ins/libcube.so.8
+lib/v_sim/plug-ins/libcube.so.8.0.0
+lib/v_sim/plug-ins/libetsf.a
+lib/v_sim/plug-ins/libetsf.la
+lib/v_sim/plug-ins/libetsf.so
+lib/v_sim/plug-ins/libetsf.so.8
+lib/v_sim/plug-ins/libetsf.so.8.0.0
+lib/v_sim/plug-ins/libobloader.a
+lib/v_sim/plug-ins/libobloader.la
+lib/v_sim/plug-ins/libobloader.so
+lib/v_sim/plug-ins/libobloader.so.8
+lib/v_sim/plug-ins/libobloader.so.8.0.0
+lib/v_sim/plug-ins/libplugmsym.a
+lib/v_sim/plug-ins/libplugmsym.la
+lib/v_sim/plug-ins/libplugmsym.so
+lib/v_sim/plug-ins/libplugmsym.so.8
+lib/v_sim/plug-ins/libplugmsym.so.8.0.0
+lib/v_sim/plug-ins/libpythongi.a
+lib/v_sim/plug-ins/libpythongi.la
+lib/v_sim/plug-ins/libpythongi.so
+lib/v_sim/plug-ins/libpythongi.so.8
+lib/v_sim/plug-ins/libpythongi.so.8.0.0
+lib/v_sim/plug-ins/libxsf.a
+lib/v_sim/plug-ins/libxsf.la
+lib/v_sim/plug-ins/libxsf.so
+lib/v_sim/plug-ins/libxsf.so.8
+lib/v_sim/plug-ins/libxsf.so.8.0.0
+man/man1/v_sim.1.gz
%%PORTDOCS%%%%DOCSDIR%%/ChangeLog.en
%%PORTDOCS%%%%DOCSDIR%%/ChangeLog.fr
-%%PORTDOCS%%%%DOCSDIR%%/ToolFileFormat.html
-%%PORTDOCS%%%%DOCSDIR%%/VisuBox.html
-%%PORTDOCS%%%%DOCSDIR%%/VisuData.html
-%%PORTDOCS%%%%DOCSDIR%%/VisuGlExt.html
-%%PORTDOCS%%%%DOCSDIR%%/VisuGlExtAxes.html
-%%PORTDOCS%%%%DOCSDIR%%/VisuGlExtBg.html
-%%PORTDOCS%%%%DOCSDIR%%/VisuGlExtBoxLegend.html
-%%PORTDOCS%%%%DOCSDIR%%/VisuGlExtForces.html
-%%PORTDOCS%%%%DOCSDIR%%/VisuGlExtFrame.html
-%%PORTDOCS%%%%DOCSDIR%%/VisuGlExtInfos.html
-%%PORTDOCS%%%%DOCSDIR%%/VisuGlExtLegend.html
-%%PORTDOCS%%%%DOCSDIR%%/VisuGlExtMaps.html
-%%PORTDOCS%%%%DOCSDIR%%/VisuGlExtNodeVectors.html
-%%PORTDOCS%%%%DOCSDIR%%/VisuGlExtNodes.html
-%%PORTDOCS%%%%DOCSDIR%%/VisuGlExtPairs.html
-%%PORTDOCS%%%%DOCSDIR%%/VisuGlExtPaths.html
-%%PORTDOCS%%%%DOCSDIR%%/VisuGlExtPlanes.html
-%%PORTDOCS%%%%DOCSDIR%%/VisuGlExtScale.html
-%%PORTDOCS%%%%DOCSDIR%%/VisuGlExtShade.html
-%%PORTDOCS%%%%DOCSDIR%%/VisuGlExtSurfaces.html
-%%PORTDOCS%%%%DOCSDIR%%/VisuGlView.html
-%%PORTDOCS%%%%DOCSDIR%%/VisuNodeArray.html
-%%PORTDOCS%%%%DOCSDIR%%/VisuObject.html
-%%PORTDOCS%%%%DOCSDIR%%/VisuPairLink.html
-%%PORTDOCS%%%%DOCSDIR%%/VisuRendering.html
-%%PORTDOCS%%%%DOCSDIR%%/VisuScalarField.html
-%%PORTDOCS%%%%DOCSDIR%%/annotation-glossary.html
-%%PORTDOCS%%%%DOCSDIR%%/api-3.1.html
-%%PORTDOCS%%%%DOCSDIR%%/api-3.2.html
-%%PORTDOCS%%%%DOCSDIR%%/api-3.3.html
-%%PORTDOCS%%%%DOCSDIR%%/api-3.4.html
-%%PORTDOCS%%%%DOCSDIR%%/api-3.5.html
-%%PORTDOCS%%%%DOCSDIR%%/api-3.6.html
-%%PORTDOCS%%%%DOCSDIR%%/api-3.7.html
-%%PORTDOCS%%%%DOCSDIR%%/api-index-full.html
%%PORTDOCS%%%%DOCSDIR%%/authors
-%%PORTDOCS%%%%DOCSDIR%%/axesTransform.png
-%%PORTDOCS%%%%DOCSDIR%%/ch01.html
-%%PORTDOCS%%%%DOCSDIR%%/ch02.html
-%%PORTDOCS%%%%DOCSDIR%%/ch03.html
-%%PORTDOCS%%%%DOCSDIR%%/ch04.html
-%%PORTDOCS%%%%DOCSDIR%%/ch05.html
-%%PORTDOCS%%%%DOCSDIR%%/ch06.html
-%%PORTDOCS%%%%DOCSDIR%%/ch07.html
-%%PORTDOCS%%%%DOCSDIR%%/ch08.html
-%%PORTDOCS%%%%DOCSDIR%%/ch09.html
-%%PORTDOCS%%%%DOCSDIR%%/ch10.html
-%%PORTDOCS%%%%DOCSDIR%%/ch11.html
-%%PORTDOCS%%%%DOCSDIR%%/core.html
-%%PORTDOCS%%%%DOCSDIR%%/gtkInterface.html
-%%PORTDOCS%%%%DOCSDIR%%/home.png
-%%PORTDOCS%%%%DOCSDIR%%/index.html
-%%PORTDOCS%%%%DOCSDIR%%/index.sgml
-%%PORTDOCS%%%%DOCSDIR%%/left.png
%%PORTDOCS%%%%DOCSDIR%%/licence.en.txt
%%PORTDOCS%%%%DOCSDIR%%/licence.fr.txt
-%%PORTDOCS%%%%DOCSDIR%%/miscInfo.html
-%%PORTDOCS%%%%DOCSDIR%%/object-tree.html
%%PORTDOCS%%%%DOCSDIR%%/pot2surf_help
%%PORTDOCS%%%%DOCSDIR%%/readme
-%%PORTDOCS%%%%DOCSDIR%%/right.png
-%%PORTDOCS%%%%DOCSDIR%%/style.css
-%%PORTDOCS%%%%DOCSDIR%%/up.png
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-VisuBoxed.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-atomic-xyz.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-atomic-yaml.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-cylinder.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-dataFile.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-dataNode.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-dumpThroughGdkPixbuf.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-dumpToABINIT.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-dumpToAscii.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-dumpToPsAndPdf.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-dumpToSVG.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-dumpToTiff.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-dumpToXyz.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-extraNode.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-geometry.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-gtk-about.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-gtk-colorComboBoxWidget.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-gtk-curveWidget.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-gtk-cylinder.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-gtk-dumpDialogWidget.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-gtk-elementComboBox.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-gtk-fieldChooser.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-gtk-interactive.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-gtk-lineObjectWidget.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-gtk-main.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-gtk-move.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-gtk-numericalEntryWidget.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-gtk-openGLWidget.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-gtk-orientationChooser.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-gtk-pairs.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-gtk-pick.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-gtk-renderingWindowWidget.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-gtk-save.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-gtk-shadeComboBoxWidget.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-gtk-stippleComboBoxWidget.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-gtk-toolPanelWidget.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-gtk-valueIOWidget.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-gtk-wire.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-gtkAtomic.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-gtkSpin.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-interactive.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-isoline.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-light.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-map.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-marks.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-objectList.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-opengl.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-panelAxes.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-panelBrowser.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-panelConfig.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-panelDataFile.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-panelElements.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-panelFogBgColor.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-panelGeometry.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-panelMap.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-panelMethod.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-panelOpenGL.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-panelPlanes.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-panelSurfaces.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-panelSurfacesTools.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-panelVibration.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-plane.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-pot2surf.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-renderingAtomic-ascii.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-renderingAtomic-d3.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-renderingAtomic.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-renderingMode.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-renderingSpin.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-surfaces-points.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-surfaces-resources.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-surfaces.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-text.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-toolColor.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-toolConfigFile.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-toolFortran.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-toolMatrix.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-toolOptions.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-toolPhysic.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-toolShade.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-vibration.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-visu-actionInterface.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-visu-basic.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-visu-commandLine.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-visu-configFile.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-visu-dump.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-visu-elements.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-visu-gtk.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-visu-openGL.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-visu-plugins.html
-%%PORTDOCS%%%%DOCSDIR%%/v-sim-wire.html
-%%PORTDOCS%%%%DOCSDIR%%/v_sim.devhelp2
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ab_silicon.in
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/aluminium.d3
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/cinchonidine.xsf.bz2
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/cinchonidine.yaml
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/cnt.Benzen_on_Ag111
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/collisions.ascii
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/coord_vib_g_co.xyz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/demo-browser.tar.gz
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/demo.ascii
@@ -176,10 +72,22 @@ lib/libv_sim-3.so.7.0.0
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/density-sih4.dat
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/diff.ascii
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/diff.dat
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/h2o-dens.cube.bz2
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/nq-netcdf.cdl
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/nq-netcdf.nc
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/planes.xml
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/pygi_collisions.v_sim.py
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/pygi_isolate.v_sim.py
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/pygi_load.v_sim.py
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/pygi_plot.v_sim.py
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/pygi_rightMenu.v_sim.py
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/pygi_rotate.v_sim.py
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/si1002x1-o_DS1_DEN-etsf.nc
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/silane.nc
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/test_isosurfaces.ascii
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/test_isosurfaces.surf
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/values.xml
+share/gir-1.0/v_sim-3.8.gir
share/icons/hicolor/16x16/apps/v_sim.png
share/icons/hicolor/22x22/apps/v_sim.png
share/icons/hicolor/24x24/apps/v_sim.png
@@ -188,10 +96,13 @@ share/icons/hicolor/48x48/apps/v_sim.png
share/icons/hicolor/scalable/apps/v_sim.svg
%%NLS%%share/locale/fr/LC_MESSAGES/v_sim.mo
share/pixmaps/v_sim.xpm
+%%DATADIR%%/pixmaps/abinit.png
+%%DATADIR%%/pixmaps/archives.png
%%DATADIR%%/pixmaps/axes-angles.png
%%DATADIR%%/pixmaps/axes-box.png
%%DATADIR%%/pixmaps/axes-button.png
%%DATADIR%%/pixmaps/axes-ortho.png
+%%DATADIR%%/pixmaps/cube.png
%%DATADIR%%/pixmaps/icone-about.png
%%DATADIR%%/pixmaps/icone-dialog.png
%%DATADIR%%/pixmaps/icone-observe.png
@@ -200,8 +111,11 @@ share/pixmaps/v_sim.xpm
%%DATADIR%%/pixmaps/logo_grey.png
%%DATADIR%%/pixmaps/logo_petit.png
%%DATADIR%%/pixmaps/logo_rectangle.png
+%%DATADIR%%/pixmaps/msym.png
+%%DATADIR%%/pixmaps/nanoquanta.png
%%DATADIR%%/pixmaps/observe-bandeau.png
%%DATADIR%%/pixmaps/openbabel.png
+%%DATADIR%%/pixmaps/pythongi.png
%%DATADIR%%/pixmaps/save-bandeau.png
%%DATADIR%%/pixmaps/stock-atomic.png
%%DATADIR%%/pixmaps/stock-axes_20.png
@@ -224,6 +138,7 @@ share/pixmaps/v_sim.xpm
%%DATADIR%%/pixmaps/stock-opengl_20.png
%%DATADIR%%/pixmaps/stock-phonons.png
%%DATADIR%%/pixmaps/stock-planes_20.png
+%%DATADIR%%/pixmaps/stock-pythongi_20.png
%%DATADIR%%/pixmaps/stock-select-all_20.png
%%DATADIR%%/pixmaps/stock-spin.png
%%DATADIR%%/pixmaps/stock-union.png
@@ -232,6 +147,7 @@ share/pixmaps/v_sim.xpm
%%DATADIR%%/pixmaps/stock_media-play.png
%%DATADIR%%/pixmaps/stock_media-stop.png
%%DATADIR%%/pixmaps/stock_rotate_20.png
+%%DATADIR%%/pixmaps/xsf.png
%%DATADIR%%/v_sim.par
%%DATADIR%%/v_sim.rc
%%DATADIR%%/v_sim.res
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