svn commit: r535344 - in head/biology: . py-scikit-bio
Yuri Victorovich
yuri at FreeBSD.org
Sat May 16 02:25:37 UTC 2020
Author: yuri
Date: Sat May 16 02:25:35 2020
New Revision: 535344
URL: https://svnweb.freebsd.org/changeset/ports/535344
Log:
New port: biology/py-scikit-bio: Data structures, algorithms, educational resources for bioinformatics
Added:
head/biology/py-scikit-bio/
head/biology/py-scikit-bio/Makefile (contents, props changed)
head/biology/py-scikit-bio/distinfo (contents, props changed)
head/biology/py-scikit-bio/pkg-descr (contents, props changed)
Modified:
head/biology/Makefile
Modified: head/biology/Makefile
==============================================================================
--- head/biology/Makefile Sat May 16 00:40:53 2020 (r535343)
+++ head/biology/Makefile Sat May 16 02:25:35 2020 (r535344)
@@ -137,6 +137,7 @@
SUBDIR += py-pandas-charm
SUBDIR += py-pyfaidx
SUBDIR += py-pysam
+ SUBDIR += py-scikit-bio
SUBDIR += py-xenaPython
SUBDIR += pyfasta
SUBDIR += python-nexus
Added: head/biology/py-scikit-bio/Makefile
==============================================================================
--- /dev/null 00:00:00 1970 (empty, because file is newly added)
+++ head/biology/py-scikit-bio/Makefile Sat May 16 02:25:35 2020 (r535344)
@@ -0,0 +1,36 @@
+# $FreeBSD$
+
+PORTNAME= scikit-bio
+PORTVERSION= 0.5.6
+CATEGORIES= biology python
+MASTER_SITES= CHEESESHOP
+PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
+
+MAINTAINER= yuri at FreeBSD.org
+COMMENT= Data structures, algorithms, educational resources for bioinformatics
+
+LICENSE= BSDCLAUSE
+LICENSE_FILE= ${WRKSRC}/COPYING.txt
+
+BUILD_DEPENDS= ${PYNUMPY}
+RUN_DEPENDS= ${PYNUMPY} \
+ ${PYTHON_PKGNAMEPREFIX}CacheControl>=0.11.5:www/py-cachecontrol@${PY_FLAVOR} \
+ ${PYTHON_PKGNAMEPREFIX}decorator>=3.4.2:devel/py-decorator@${PY_FLAVOR} \
+ ${PYTHON_PKGNAMEPREFIX}hdmedians>=0.13:math/py-hdmedians@${PY_FLAVOR} \
+ ${PYTHON_PKGNAMEPREFIX}ipython>=3.2.0:devel/ipython@${PY_FLAVOR} \
+ ${PYTHON_PKGNAMEPREFIX}lockfile>=0.10.2:devel/py-lockfile@${PY_FLAVOR} \
+ ${PYTHON_PKGNAMEPREFIX}matplotlib>=1.4.3:math/py-matplotlib@${PY_FLAVOR} \
+ ${PYTHON_PKGNAMEPREFIX}natsort>=4.0.3:devel/py-natsort@${PY_FLAVOR} \
+ ${PYTHON_PKGNAMEPREFIX}pandas>=1.0.0:math/py-pandas@${PY_FLAVOR} \
+ ${PYTHON_PKGNAMEPREFIX}scikit-learn>=0.19.1:science/py-scikit-learn@${PY_FLAVOR} \
+ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR}
+
+USES= python:3.5+
+USE_PYTHON= autoplist distutils
+
+xpost-install:
+ @${STRIP_CMD} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/skbio/alignment/_ssw_wrapper.so
+ @${STRIP_CMD} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/skbio/diversity/_phylogenetic.so
+ @${STRIP_CMD} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/skbio/stats/__subsample.so
+
+.include <bsd.port.mk>
Added: head/biology/py-scikit-bio/distinfo
==============================================================================
--- /dev/null 00:00:00 1970 (empty, because file is newly added)
+++ head/biology/py-scikit-bio/distinfo Sat May 16 02:25:35 2020 (r535344)
@@ -0,0 +1,3 @@
+TIMESTAMP = 1589588901
+SHA256 (scikit-bio-0.5.6.tar.gz) = 48b73ec53ce0ff2c2e3e05f3cfcf93527c1525a8d3e9dd4ae317b4219c37f0ea
+SIZE (scikit-bio-0.5.6.tar.gz) = 8380439
Added: head/biology/py-scikit-bio/pkg-descr
==============================================================================
--- /dev/null 00:00:00 1970 (empty, because file is newly added)
+++ head/biology/py-scikit-bio/pkg-descr Sat May 16 02:25:35 2020 (r535344)
@@ -0,0 +1,4 @@
+scikit-bio is an open-source python package providing data structures,
+algorithms, and educational resources for bioinformatics.
+
+WWW: http://scikit-bio.org/
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