svn commit: r529331 - head/biology/hyphy
Joseph Mingrone
jrm at FreeBSD.org
Sat Mar 28 12:27:22 UTC 2020
Author: jrm
Date: Sat Mar 28 12:27:11 2020
New Revision: 529331
URL: https://svnweb.freebsd.org/changeset/ports/529331
Log:
biology/hyphy: Update to version 2.5.8
Upstream changes: https://github.com/veg/hyphy/releases/tag/2.5.8
Modified:
head/biology/hyphy/Makefile (contents, props changed)
head/biology/hyphy/distinfo (contents, props changed)
head/biology/hyphy/pkg-plist (contents, props changed)
Modified: head/biology/hyphy/Makefile
==============================================================================
--- head/biology/hyphy/Makefile Sat Mar 28 12:22:18 2020 (r529330)
+++ head/biology/hyphy/Makefile Sat Mar 28 12:27:11 2020 (r529331)
@@ -1,7 +1,7 @@
# $FreeBSD$
PORTNAME= hyphy
-DISTVERSION= 2.5.7
+DISTVERSION= 2.5.8
CATEGORIES= biology
MAINTAINER= jrm at FreeBSD.org
Modified: head/biology/hyphy/distinfo
==============================================================================
--- head/biology/hyphy/distinfo Sat Mar 28 12:22:18 2020 (r529330)
+++ head/biology/hyphy/distinfo Sat Mar 28 12:27:11 2020 (r529331)
@@ -1,3 +1,3 @@
-TIMESTAMP = 1584664580
-SHA256 (veg-hyphy-2.5.7_GH0.tar.gz) = fdcbad1f2f2c7fc83f5f7cec464aedf1114d68b84a34a65b59caeb462b631caf
-SIZE (veg-hyphy-2.5.7_GH0.tar.gz) = 6081964
+TIMESTAMP = 1585349961
+SHA256 (veg-hyphy-2.5.8_GH0.tar.gz) = df528ba5cd86071017a005ae9a7cd76f8d35b7270e62840ae5fc4231092ac9b8
+SIZE (veg-hyphy-2.5.8_GH0.tar.gz) = 6093096
Modified: head/biology/hyphy/pkg-plist
==============================================================================
--- head/biology/hyphy/pkg-plist Sat Mar 28 12:22:18 2020 (r529330)
+++ head/biology/hyphy/pkg-plist Sat Mar 28 12:27:11 2020 (r529331)
@@ -1,5 +1,4 @@
bin/hyphy
-lib/hyphy/TemplateBatchFiles/simpleBootstrap.bf
lib/hyphy/GeneticCodes/Alt_Yeast_Nuclear.cod
lib/hyphy/GeneticCodes/Ascidian_mtDNA.cod
lib/hyphy/GeneticCodes/Blepharisma_Nuclear.cod
@@ -181,6 +180,7 @@ lib/hyphy/TemplateBatchFiles/SelectionAnalyses/FEL-con
lib/hyphy/TemplateBatchFiles/SelectionAnalyses/FEL.bf
lib/hyphy/TemplateBatchFiles/SelectionAnalyses/FUBAR.bf
lib/hyphy/TemplateBatchFiles/SelectionAnalyses/MEME.bf
+lib/hyphy/TemplateBatchFiles/SelectionAnalyses/PRIME.bf
lib/hyphy/TemplateBatchFiles/SelectionAnalyses/RELAX-Groups.bf
lib/hyphy/TemplateBatchFiles/SelectionAnalyses/RELAX-SRV.bf
lib/hyphy/TemplateBatchFiles/SelectionAnalyses/RELAX.bf
@@ -385,6 +385,7 @@ lib/hyphy/TemplateBatchFiles/libv3/models/codon.bf
lib/hyphy/TemplateBatchFiles/libv3/models/codon/BS_REL.bf
lib/hyphy/TemplateBatchFiles/libv3/models/codon/MG_REV.bf
lib/hyphy/TemplateBatchFiles/libv3/models/codon/MG_REV_MH.bf
+lib/hyphy/TemplateBatchFiles/libv3/models/codon/MG_REV_PROPERTIES.bf
lib/hyphy/TemplateBatchFiles/libv3/models/codon/MG_REV_TRIP.bf
lib/hyphy/TemplateBatchFiles/libv3/models/frequencies.bf
lib/hyphy/TemplateBatchFiles/libv3/models/model_functions.bf
@@ -427,6 +428,7 @@ lib/hyphy/TemplateBatchFiles/relative_nucleotide_rates
lib/hyphy/TemplateBatchFiles/relrateBootstrap.bf
lib/hyphy/TemplateBatchFiles/relratioBootstrap.bf
lib/hyphy/TemplateBatchFiles/selectModelParameters.bf
+lib/hyphy/TemplateBatchFiles/simpleBootstrap.bf
lib/hyphy/data/brown.nuc
lib/hyphy/data/integrase_BDA.nex
lib/hyphy/data/p51.aa
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