svn commit: r545542 - head/biology/paml/files

[Kyle Evans]

Author: kevans
Date: Thu Aug 20 17:07:03 2020
New Revision: 545542
URL: https://svnweb.freebsd.org/changeset/ports/545542

Log:
  biology/paml: fix the build with LLVM 11
  
  LLVM 11 switched from -fcommon to -fno-common by default. This revealed a
  slight misposition of names in paml.h, which caused one symbol per enum
  that's not used anywhere.
  
  The fix just moves the names back so that the enums are named that, rather
  than creating new unused symbols.
  
  Reviewed by:	zeising
  Approved by:	jrm (maintainer)
  MFH:		2020Q3

Added:
  head/biology/paml/files/
  head/biology/paml/files/patch-src_paml.h   (contents, props changed)

Added: head/biology/paml/files/patch-src_paml.h
==============================================================================
--- /dev/null	00:00:00 1970	(empty, because file is newly added)
+++ head/biology/paml/files/patch-src_paml.h	Thu Aug 20 17:07:03 2020	(r545542)
@@ -0,0 +1,14 @@
+--- src/paml.h.orig	2020-08-20 16:14:50 UTC
++++ src/paml.h
+@@ -372,9 +372,9 @@ void copySptree(void);
+ void printSptree(void);
+ 
+ 
+-enum {BASEseq=0, CODONseq, AAseq, CODON2AAseq, BINARYseq, BASE5seq} SeqTypes;
++enum SeqTypes {BASEseq=0, CODONseq, AAseq, CODON2AAseq, BINARYseq, BASE5seq};
+ 
+-enum {PrBranch=1, PrNodeNum=2, PrLabel=4, PrNodeStr=8, PrAge=16, PrOmega=32} OutTreeOptions;
++enum OutTreeOptions {PrBranch=1, PrNodeNum=2, PrLabel=4, PrNodeStr=8, PrAge=16, PrOmega=32};
+ 
+ 
+ /* use mean (0; default) for discrete gamma instead of median (1) */