svn commit: r531215 - in head/biology/fastp: . files
Jason W. Bacon
jwb at FreeBSD.org
Thu Apr 9 16:17:03 UTC 2020
Author: jwb
Date: Thu Apr 9 16:17:02 2020
New Revision: 531215
URL: https://svnweb.freebsd.org/changeset/ports/531215
Log:
biology/fastp: Upgrade to 0.20.1
Fix the plotly.js CDN issue
Reported by: portscout
Modified:
head/biology/fastp/Makefile
head/biology/fastp/distinfo
head/biology/fastp/files/patch-Makefile
Modified: head/biology/fastp/Makefile
==============================================================================
--- head/biology/fastp/Makefile Thu Apr 9 16:13:08 2020 (r531214)
+++ head/biology/fastp/Makefile Thu Apr 9 16:17:02 2020 (r531215)
@@ -2,8 +2,7 @@
PORTNAME= fastp
DISTVERSIONPREFIX= v
-DISTVERSION= 0.20.0
-PORTREVISION= 1
+DISTVERSION= 0.20.1
CATEGORIES= biology
MAINTAINER= jwb at FreeBSD.org
Modified: head/biology/fastp/distinfo
==============================================================================
--- head/biology/fastp/distinfo Thu Apr 9 16:13:08 2020 (r531214)
+++ head/biology/fastp/distinfo Thu Apr 9 16:17:02 2020 (r531215)
@@ -1,3 +1,3 @@
-TIMESTAMP = 1556889058
-SHA256 (OpenGene-fastp-v0.20.0_GH0.tar.gz) = 8d751d2746db11ff233032fc49e3bcc8b53758dd4596fdcf4b4099a4d702ac22
-SIZE (OpenGene-fastp-v0.20.0_GH0.tar.gz) = 139422
+TIMESTAMP = 1586443273
+SHA256 (OpenGene-fastp-v0.20.1_GH0.tar.gz) = e1b663717850bed7cb560c0c540e9a05dd9448ec76978faaf853a6959fd5b1b3
+SIZE (OpenGene-fastp-v0.20.1_GH0.tar.gz) = 139703
Modified: head/biology/fastp/files/patch-Makefile
==============================================================================
--- head/biology/fastp/files/patch-Makefile Thu Apr 9 16:13:08 2020 (r531214)
+++ head/biology/fastp/files/patch-Makefile Thu Apr 9 16:17:02 2020 (r531215)
@@ -1,4 +1,4 @@
---- Makefile.orig 2019-04-17 03:23:22 UTC
+--- Makefile.orig 2020-04-08 07:26:52 UTC
+++ Makefile
@@ -3,9 +3,11 @@ DIR_SRC := ./src
DIR_OBJ := ./obj
@@ -12,7 +12,7 @@
SRC := $(wildcard ${DIR_SRC}/*.cpp)
OBJ := $(patsubst %.cpp,${DIR_OBJ}/%.o,$(notdir ${SRC}))
-@@ -15,7 +17,8 @@ TARGET := fastp
+@@ -15,13 +17,14 @@ TARGET := fastp
BIN_TARGET := ${TARGET}
CXX ?= g++
@@ -20,8 +20,16 @@
+CXXFLAGS ?= -g -O3
+CXXFLAGS += -std=c++11 -I${DIR_INC} $(foreach includedir,$(INCLUDE_DIRS),-I$(includedir))
LIBS := -lz -lpthread
- LD_FLAGS := $(foreach librarydir,$(LIBRARY_DIRS),-L$(librarydir)) $(LIBS) $(LD_FLAGS)
+-LD_FLAGS := $(foreach librarydir,$(LIBRARY_DIRS),-L$(librarydir)) $(LIBS) $(LD_FLAGS)
++LDFLAGS += $(foreach librarydir,$(LIBRARY_DIRS),-L$(librarydir)) $(LIBS)
+
+ ${BIN_TARGET}:${OBJ}
+- $(CXX) $(OBJ) -o $@ $(LD_FLAGS)
++ $(CXX) $(OBJ) -o $@ $(LDFLAGS)
+
+ ${DIR_OBJ}/%.o:${DIR_SRC}/%.cpp make_obj_dir
+ $(CXX) -c $< -o $@ $(CXXFLAGS)
@@ -38,5 +41,8 @@ make_obj_dir:
fi
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