svn commit: r500860 - in head/biology/minimap2: . files

[Jason W. Bacon]

Author: jwb
Date: Sun May  5 14:56:07 2019
New Revision: 500860
URL: https://svnweb.freebsd.org/changeset/ports/500860

Log:
  biology/minimap2: Upgrade to 2.17
  
  Reported by:    portscout

Modified:
  head/biology/minimap2/Makefile
  head/biology/minimap2/distinfo   (contents, props changed)
  head/biology/minimap2/files/patch-Makefile   (contents, props changed)

Modified: head/biology/minimap2/Makefile
==============================================================================
--- head/biology/minimap2/Makefile	Sun May  5 14:50:09 2019	(r500859)
+++ head/biology/minimap2/Makefile	Sun May  5 14:56:07 2019	(r500860)
@@ -2,7 +2,7 @@
 
 PORTNAME=		minimap2
 DISTVERSIONPREFIX=	v
-DISTVERSION=		2.16
+DISTVERSION=		2.17
 CATEGORIES=		biology
 
 MAINTAINER=	jwb at FreeBSD.org

Modified: head/biology/minimap2/distinfo
==============================================================================
--- head/biology/minimap2/distinfo	Sun May  5 14:50:09 2019	(r500859)
+++ head/biology/minimap2/distinfo	Sun May  5 14:56:07 2019	(r500860)
@@ -1,3 +1,3 @@
-TIMESTAMP = 1555901297
-SHA256 (lh3-minimap2-v2.16_GH0.tar.gz) = 9d4f1c9f1c2b29c2560b7ad53b2210dabd82161a0f88184f423534bd289433c3
-SIZE (lh3-minimap2-v2.16_GH0.tar.gz) = 221287
+TIMESTAMP = 1557067380
+SHA256 (lh3-minimap2-v2.17_GH0.tar.gz) = 0a3eaa3ef3d9f9e41f48199cc4aac0508366ac644fc3e8fe05e3463acd23d20b
+SIZE (lh3-minimap2-v2.17_GH0.tar.gz) = 224006

Modified: head/biology/minimap2/files/patch-Makefile
==============================================================================
--- head/biology/minimap2/files/patch-Makefile	Sun May  5 14:50:09 2019	(r500859)
+++ head/biology/minimap2/files/patch-Makefile	Sun May  5 14:56:07 2019	(r500860)
@@ -1,8 +1,10 @@
---- Makefile.orig	2019-02-28 20:49:24 UTC
+--- Makefile.orig	2019-05-05 03:49:17 UTC
 +++ Makefile
-@@ -1,11 +1,19 @@
+@@ -1,11 +1,21 @@
 -CFLAGS=		-g -Wall -O2 -Wc++-compat #-Wextra
 -CPPFLAGS=	-DHAVE_KALLOC
++# Patches using ?= and adding install target were rejected by developers
++# https://github.com/lh3/minimap2/issues/388
 +CFLAGS?=	-g -Wall -O2
 +CFLAGS+=	-Wc++-compat #-Wextra
 +CPPFLAGS+=	-DHAVE_KALLOC
@@ -22,7 +24,7 @@
  ifeq ($(arm_neon),) # if arm_neon is not defined
  ifeq ($(sse2only),) # if sse2only is not defined
  	OBJS+=ksw2_extz2_sse41.o ksw2_extd2_sse41.o ksw2_exts2_sse41.o ksw2_extz2_sse2.o ksw2_extd2_sse2.o ksw2_exts2_sse2.o ksw2_dispatch.o
-@@ -84,6 +92,15 @@ ksw2_exts2_neon.o:ksw2_exts2_sse.c ksw2.h kalloc.h
+@@ -84,6 +94,15 @@ ksw2_exts2_neon.o:ksw2_exts2_sse.c ksw2.h kalloc.h
  		$(CC) -c $(CFLAGS) $(CPPFLAGS) -DKSW_SSE2_ONLY -D__SSE2__ $(INCLUDES) $< -o $@
  
  # other non-file targets