svn commit: r496770 - in head/biology: . py-dnaio
Jason W. Bacon
jwb at FreeBSD.org
Sun Mar 24 19:40:28 UTC 2019
Author: jwb
Date: Sun Mar 24 19:40:26 2019
New Revision: 496770
URL: https://svnweb.freebsd.org/changeset/ports/496770
Log:
biology/py-dnaio: Read and write FASTQ and FASTA
Factored out of py-cutadapt
Reviewed by: jrm
Added:
head/biology/py-dnaio/
head/biology/py-dnaio/Makefile (contents, props changed)
head/biology/py-dnaio/distinfo (contents, props changed)
head/biology/py-dnaio/pkg-descr (contents, props changed)
Modified:
head/biology/Makefile
Modified: head/biology/Makefile
==============================================================================
--- head/biology/Makefile Sun Mar 24 18:44:12 2019 (r496769)
+++ head/biology/Makefile Sun Mar 24 19:40:26 2019 (r496770)
@@ -113,6 +113,7 @@
SUBDIR += py-biopython
SUBDIR += py-bx-python
SUBDIR += py-cutadapt
+ SUBDIR += py-dnaio
SUBDIR += py-fastTSNE
SUBDIR += py-gffutils
SUBDIR += py-gtfparse
Added: head/biology/py-dnaio/Makefile
==============================================================================
--- /dev/null 00:00:00 1970 (empty, because file is newly added)
+++ head/biology/py-dnaio/Makefile Sun Mar 24 19:40:26 2019 (r496770)
@@ -0,0 +1,18 @@
+# $FreeBSD$
+
+PORTNAME= dnaio
+DISTVERSION= 0.3
+CATEGORIES= biology python
+MASTER_SITES= CHEESESHOP
+PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
+
+MAINTAINER= jwb at FreeBSD.org
+COMMENT= Read and write FASTQ and FASTA
+
+LICENSE= MIT
+LICENSE_FILE= ${WRKSRC}/LICENSE
+
+USES= python:3.4+
+USE_PYTHON= autoplist distutils
+
+.include <bsd.port.mk>
Added: head/biology/py-dnaio/distinfo
==============================================================================
--- /dev/null 00:00:00 1970 (empty, because file is newly added)
+++ head/biology/py-dnaio/distinfo Sun Mar 24 19:40:26 2019 (r496770)
@@ -0,0 +1,3 @@
+TIMESTAMP = 1553347181
+SHA256 (dnaio-0.3.tar.gz) = 47e4449affad0981978fe986684fc0d9c39736f05a157f6cf80e54dae0a92638
+SIZE (dnaio-0.3.tar.gz) = 138098
Added: head/biology/py-dnaio/pkg-descr
==============================================================================
--- /dev/null 00:00:00 1970 (empty, because file is newly added)
+++ head/biology/py-dnaio/pkg-descr Sun Mar 24 19:40:26 2019 (r496770)
@@ -0,0 +1,5 @@
+dnaio is a Python 3 library for fast parsing of FASTQ and also FASTA files. The
+code was previously part of the cutadapt tool and has been improved since it
+has been split out.
+
+WWW: https://pypi.python.org/pypi/dnaio
More information about the svn-ports-all
mailing list