svn commit: r504268 - in head/biology: . treekin

[Yuri Victorovich]

Author: yuri
Date: Sat Jun 15 20:37:06 2019
New Revision: 504268
URL: https://svnweb.freebsd.org/changeset/ports/504268

Log:
  New port: biology/treekin: Efficient computation of RNA folding dynamics

Added:
  head/biology/treekin/
  head/biology/treekin/Makefile   (contents, props changed)
  head/biology/treekin/distinfo   (contents, props changed)
  head/biology/treekin/pkg-descr   (contents, props changed)
Modified:
  head/biology/Makefile

Modified: head/biology/Makefile
==============================================================================
--- head/biology/Makefile	Sat Jun 15 19:43:22 2019	(r504267)
+++ head/biology/Makefile	Sat Jun 15 20:37:06 2019	(r504268)
@@ -155,6 +155,7 @@
     SUBDIR += tRNAscan-SE
     SUBDIR += t_coffee
     SUBDIR += tabixpp
+    SUBDIR += treekin
     SUBDIR += treepuzzle
     SUBDIR += trimadap
     SUBDIR += trimmomatic

Added: head/biology/treekin/Makefile
==============================================================================
--- /dev/null	00:00:00 1970	(empty, because file is newly added)
+++ head/biology/treekin/Makefile	Sat Jun 15 20:37:06 2019	(r504268)
@@ -0,0 +1,28 @@
+# $FreeBSD$
+
+PORTNAME=	treekin
+DISTVERSION=	0.5.1
+CATEGORIES=	biology
+MASTER_SITES=	https://www.tbi.univie.ac.at/RNA/packages/source/
+DISTNAME=	Treekin-${DISTVERSION}
+
+MAINTAINER=	yuri at FreeBSD.org
+COMMENT=	Efficient computation of RNA folding dynamics
+
+LICENSE=	LatticeLib
+LICENSE_NAME=	LatticeLib Disclaimer and Copyright
+LICENSE_FILE=	${WRKSRC}/COPYING
+LICENSE_PERMS=	auto-accept dist-mirror pkg-mirror
+
+BUILD_DEPENDS=	lapacke>0:math/lapacke
+
+USES=		blaslapack:netlib fortran gmake localbase:ldflags
+
+GNU_CONFIGURE=	yes
+
+BINARY_ALIAS=	make=${GMAKE}
+
+PLIST_FILES=	bin/${PORTNAME} \
+		man/man1/${PORTNAME}.1.gz
+
+.include <bsd.port.mk>

Added: head/biology/treekin/distinfo
==============================================================================
--- /dev/null	00:00:00 1970	(empty, because file is newly added)
+++ head/biology/treekin/distinfo	Sat Jun 15 20:37:06 2019	(r504268)
@@ -0,0 +1,3 @@
+TIMESTAMP = 1560629735
+SHA256 (Treekin-0.5.1.tar.gz) = aae56c1a746829b02a9b97c6a54d1d58348718d4ca585ef41a5dbdd41d5c9f06
+SIZE (Treekin-0.5.1.tar.gz) = 222232

Added: head/biology/treekin/pkg-descr
==============================================================================
--- /dev/null	00:00:00 1970	(empty, because file is newly added)
+++ head/biology/treekin/pkg-descr	Sat Jun 15 20:37:06 2019	(r504268)
@@ -0,0 +1,5 @@
+treekin  computes folding dynamics on coarse grained version of an energy
+landscape, where all conformations belonging to the same local minimum have
+been contracted into a single macro-state.
+
+WWW: https://www.tbi.univie.ac.at/RNA/Treekin/