svn commit: r493444 - in head/biology: . p5-Bio-Cluster

[Sunpoet Po-Chuan Hsieh]

Author: sunpoet
Date: Wed Feb 20 20:46:37 2019
New Revision: 493444
URL: https://svnweb.freebsd.org/changeset/ports/493444

Log:
  Add p5-Bio-Cluster 1.7.3
  
  Bio::Cluster is the BioPerl cluster modules. Classes and modules here describe
  the basic structure for a cluster of BioPerl objects.
  
  WWW: https://metacpan.org/release/Bio-Cluster

Added:
  head/biology/p5-Bio-Cluster/
  head/biology/p5-Bio-Cluster/Makefile   (contents, props changed)
  head/biology/p5-Bio-Cluster/distinfo   (contents, props changed)
  head/biology/p5-Bio-Cluster/pkg-descr   (contents, props changed)
  head/biology/p5-Bio-Cluster/pkg-plist   (contents, props changed)
Modified:
  head/biology/Makefile

Modified: head/biology/Makefile
==============================================================================
--- head/biology/Makefile	Wed Feb 20 20:34:50 2019	(r493443)
+++ head/biology/Makefile	Wed Feb 20 20:46:37 2019	(r493444)
@@ -77,6 +77,7 @@
     SUBDIR += ngs-sdk
     SUBDIR += p5-AcePerl
     SUBDIR += p5-Bio-ASN1-EntrezGene
+    SUBDIR += p5-Bio-Cluster
     SUBDIR += p5-Bio-Coordinate
     SUBDIR += p5-Bio-Das
     SUBDIR += p5-Bio-Das-Lite

Added: head/biology/p5-Bio-Cluster/Makefile
==============================================================================
--- /dev/null	00:00:00 1970	(empty, because file is newly added)
+++ head/biology/p5-Bio-Cluster/Makefile	Wed Feb 20 20:46:37 2019	(r493444)
@@ -0,0 +1,27 @@
+# Created by: Po-Chuan Hsieh <sunpoet at FreeBSD.org>
+# $FreeBSD$
+
+PORTNAME=	Bio-Cluster
+PORTVERSION=	1.7.3
+CATEGORIES=	biology perl5
+MASTER_SITES=	CPAN
+PKGNAMEPREFIX=	p5-
+
+MAINTAINER=	sunpoet at FreeBSD.org
+COMMENT=	BioPerl cluster modules
+
+LICENSE=	ART10 GPLv1+
+LICENSE_COMB=	dual
+LICENSE_FILE=	${WRKSRC}/LICENSE
+
+#TODO: Add Bio::Variation::SNP
+BUILD_DEPENDS=	${RUN_DEPENDS}
+RUN_DEPENDS=	p5-BioPerl>=0:biology/p5-BioPerl \
+		p5-XML-SAX>=0:textproc/p5-XML-SAX
+
+USES=		perl5
+USE_PERL5=	configure
+
+NO_ARCH=	yes
+
+.include <bsd.port.mk>

Added: head/biology/p5-Bio-Cluster/distinfo
==============================================================================
--- /dev/null	00:00:00 1970	(empty, because file is newly added)
+++ head/biology/p5-Bio-Cluster/distinfo	Wed Feb 20 20:46:37 2019	(r493444)
@@ -0,0 +1,3 @@
+TIMESTAMP = 1549712664
+SHA256 (Bio-Cluster-1.7.3.tar.gz) = 1967fb3899b92f245b5bf6cb64ef076fc3f8427b1a96ca5f7b74d220b6191fbb
+SIZE (Bio-Cluster-1.7.3.tar.gz) = 58304

Added: head/biology/p5-Bio-Cluster/pkg-descr
==============================================================================
--- /dev/null	00:00:00 1970	(empty, because file is newly added)
+++ head/biology/p5-Bio-Cluster/pkg-descr	Wed Feb 20 20:46:37 2019	(r493444)
@@ -0,0 +1,4 @@
+Bio::Cluster is the BioPerl cluster modules. Classes and modules here describe
+the basic structure for a cluster of BioPerl objects.
+
+WWW: https://metacpan.org/release/Bio-Cluster

Added: head/biology/p5-Bio-Cluster/pkg-plist
==============================================================================
--- /dev/null	00:00:00 1970	(empty, because file is newly added)
+++ head/biology/p5-Bio-Cluster/pkg-plist	Wed Feb 20 20:46:37 2019	(r493444)
@@ -0,0 +1,20 @@
+%%SITE_PERL%%/Bio/Cluster.pm
+%%SITE_PERL%%/Bio/Cluster/ClusterFactory.pm
+%%SITE_PERL%%/Bio/Cluster/FamilyI.pm
+%%SITE_PERL%%/Bio/Cluster/SequenceFamily.pm
+%%SITE_PERL%%/Bio/Cluster/UniGene.pm
+%%SITE_PERL%%/Bio/Cluster/UniGeneI.pm
+%%SITE_PERL%%/Bio/ClusterI.pm
+%%SITE_PERL%%/Bio/ClusterIO.pm
+%%SITE_PERL%%/Bio/ClusterIO/dbsnp.pm
+%%SITE_PERL%%/Bio/ClusterIO/unigene.pm
+%%PERL5_MAN3%%/Bio::Cluster.3.gz
+%%PERL5_MAN3%%/Bio::Cluster::ClusterFactory.3.gz
+%%PERL5_MAN3%%/Bio::Cluster::FamilyI.3.gz
+%%PERL5_MAN3%%/Bio::Cluster::SequenceFamily.3.gz
+%%PERL5_MAN3%%/Bio::Cluster::UniGene.3.gz
+%%PERL5_MAN3%%/Bio::Cluster::UniGeneI.3.gz
+%%PERL5_MAN3%%/Bio::ClusterI.3.gz
+%%PERL5_MAN3%%/Bio::ClusterIO.3.gz
+%%PERL5_MAN3%%/Bio::ClusterIO::dbsnp.3.gz
+%%PERL5_MAN3%%/Bio::ClusterIO::unigene.3.gz