svn commit: r519318 - in head/biology: . p5-Bio-DB-EMBL

[Sunpoet Po-Chuan Hsieh]

Author: sunpoet
Date: Sun Dec  8 16:49:19 2019
New Revision: 519318
URL: https://svnweb.freebsd.org/changeset/ports/519318

Log:
  Add p5-Bio-DB-EMBL 1.7.4
  
  Bio::DB::EMBL allows the dynamic retrieval of sequence objects Bio::Seq from the
  EMBL database using the dbfetch script at EBI.
  
  In order to make changes transparent we have host type (currently only ebi) and
  location (defaults to ebi) separated out. This allows later additions of more
  servers in different geographical locations.
  
  The functionality of this module is inherited from Bio::DB::DBFetch which
  implements Bio::DB::WebDBSeqI.
  
  WWW: https://metacpan.org/release/Bio-DB-EMBL

Added:
  head/biology/p5-Bio-DB-EMBL/
  head/biology/p5-Bio-DB-EMBL/Makefile   (contents, props changed)
  head/biology/p5-Bio-DB-EMBL/distinfo   (contents, props changed)
  head/biology/p5-Bio-DB-EMBL/pkg-descr   (contents, props changed)
  head/biology/p5-Bio-DB-EMBL/pkg-plist   (contents, props changed)
Modified:
  head/biology/Makefile

Modified: head/biology/Makefile
==============================================================================
--- head/biology/Makefile	Sun Dec  8 16:49:13 2019	(r519317)
+++ head/biology/Makefile	Sun Dec  8 16:49:19 2019	(r519318)
@@ -86,6 +86,7 @@
     SUBDIR += p5-Bio-ASN1-EntrezGene
     SUBDIR += p5-Bio-Cluster
     SUBDIR += p5-Bio-Coordinate
+    SUBDIR += p5-Bio-DB-EMBL
     SUBDIR += p5-Bio-Das
     SUBDIR += p5-Bio-Das-Lite
     SUBDIR += p5-Bio-FeatureIO

Added: head/biology/p5-Bio-DB-EMBL/Makefile
==============================================================================
--- /dev/null	00:00:00 1970	(empty, because file is newly added)
+++ head/biology/p5-Bio-DB-EMBL/Makefile	Sun Dec  8 16:49:19 2019	(r519318)
@@ -0,0 +1,27 @@
+# Created by: Po-Chuan Hsieh <sunpoet at FreeBSD.org>
+# $FreeBSD$
+
+PORTNAME=	Bio-DB-EMBL
+PORTVERSION=	1.7.4
+CATEGORIES=	biology perl5
+MASTER_SITES=	CPAN
+PKGNAMEPREFIX=	p5-
+
+MAINTAINER=	sunpoet at FreeBSD.org
+COMMENT=	Database object interface for EMBL entry retrieval
+
+LICENSE=	ART10 GPLv1+
+LICENSE_COMB=	dual
+LICENSE_FILE=	${WRKSRC}/LICENSE
+
+BUILD_DEPENDS=	${RUN_DEPENDS}
+RUN_DEPENDS=	p5-BioPerl>=0:biology/p5-BioPerl
+TEST_DEPENDS=	p5-Test-Most>=0:devel/p5-Test-Most \
+		p5-Test-RequiresInternet>=0:devel/p5-Test-RequiresInternet
+
+USES=		perl5
+USE_PERL5=	configure
+
+NO_ARCH=	yes
+
+.include <bsd.port.mk>

Added: head/biology/p5-Bio-DB-EMBL/distinfo
==============================================================================
--- /dev/null	00:00:00 1970	(empty, because file is newly added)
+++ head/biology/p5-Bio-DB-EMBL/distinfo	Sun Dec  8 16:49:19 2019	(r519318)
@@ -0,0 +1,3 @@
+TIMESTAMP = 1575793783
+SHA256 (Bio-DB-EMBL-1.7.4.tar.gz) = fce080c4b3db7bcc529fd0cf0d29700d0b86ef8bbe7f77ad87f429a3ae7e1a27
+SIZE (Bio-DB-EMBL-1.7.4.tar.gz) = 13927

Added: head/biology/p5-Bio-DB-EMBL/pkg-descr
==============================================================================
--- /dev/null	00:00:00 1970	(empty, because file is newly added)
+++ head/biology/p5-Bio-DB-EMBL/pkg-descr	Sun Dec  8 16:49:19 2019	(r519318)
@@ -0,0 +1,11 @@
+Bio::DB::EMBL allows the dynamic retrieval of sequence objects Bio::Seq from the
+EMBL database using the dbfetch script at EBI.
+
+In order to make changes transparent we have host type (currently only ebi) and
+location (defaults to ebi) separated out. This allows later additions of more
+servers in different geographical locations.
+
+The functionality of this module is inherited from Bio::DB::DBFetch which
+implements Bio::DB::WebDBSeqI.
+
+WWW: https://metacpan.org/release/Bio-DB-EMBL

Added: head/biology/p5-Bio-DB-EMBL/pkg-plist
==============================================================================
--- /dev/null	00:00:00 1970	(empty, because file is newly added)
+++ head/biology/p5-Bio-DB-EMBL/pkg-plist	Sun Dec  8 16:49:19 2019	(r519318)
@@ -0,0 +1,2 @@
+%%SITE_PERL%%/Bio/DB/EMBL.pm
+%%PERL5_MAN3%%/Bio::DB::EMBL.3.gz