svn commit: r510395 - in head/biology/ngs-sdk: . files

[Yuri Victorovich]

Author: yuri
Date: Sat Aug 31 15:09:47 2019
New Revision: 510395
URL: https://svnweb.freebsd.org/changeset/ports/510395

Log:
  biology/ngs-sdk: Update 2.9.6 -> 2.10.0
  
  Reported by:	portscout

Modified:
  head/biology/ngs-sdk/Makefile
  head/biology/ngs-sdk/distinfo
  head/biology/ngs-sdk/files/patch-ngs-sdk_setup_konfigure.perl
  head/biology/ngs-sdk/pkg-plist

Modified: head/biology/ngs-sdk/Makefile
==============================================================================
--- head/biology/ngs-sdk/Makefile	Sat Aug 31 15:03:00 2019	(r510394)
+++ head/biology/ngs-sdk/Makefile	Sat Aug 31 15:09:47 2019	(r510395)
@@ -1,7 +1,7 @@
 # $FreeBSD$
 
 PORTNAME=	ngs
-DISTVERSION=	2.9.6
+DISTVERSION=	2.10.0
 CATEGORIES=	biology
 PKGNAMESUFFIX=	-sdk
 

Modified: head/biology/ngs-sdk/distinfo
==============================================================================
--- head/biology/ngs-sdk/distinfo	Sat Aug 31 15:03:00 2019	(r510394)
+++ head/biology/ngs-sdk/distinfo	Sat Aug 31 15:09:47 2019	(r510395)
@@ -1,3 +1,3 @@
-TIMESTAMP = 1554002979
-SHA256 (ncbi-ngs-2.9.6_GH0.tar.gz) = 4be42f4d62b2376dc2fc4cd992822525bd99f8e1193008c2dab387a2f291405b
-SIZE (ncbi-ngs-2.9.6_GH0.tar.gz) = 1092167
+TIMESTAMP = 1567263810
+SHA256 (ncbi-ngs-2.10.0_GH0.tar.gz) = 4139adff83af213d7880bc80d1c0f5ee9b00c6c4e615d00aa47aaa267e40ed25
+SIZE (ncbi-ngs-2.10.0_GH0.tar.gz) = 1093883

Modified: head/biology/ngs-sdk/files/patch-ngs-sdk_setup_konfigure.perl
==============================================================================
--- head/biology/ngs-sdk/files/patch-ngs-sdk_setup_konfigure.perl	Sat Aug 31 15:03:00 2019	(r510394)
+++ head/biology/ngs-sdk/files/patch-ngs-sdk_setup_konfigure.perl	Sat Aug 31 15:09:47 2019	(r510395)
@@ -1,6 +1,6 @@
---- ngs-sdk/setup/konfigure.perl.orig	2018-02-23 22:53:52 UTC
+--- ngs-sdk/setup/konfigure.perl.orig	2019-08-20 18:05:02 UTC
 +++ ngs-sdk/setup/konfigure.perl
-@@ -202,7 +202,7 @@ print "checking system type... " unless 
+@@ -202,7 +202,7 @@ print "checking system type... " unless ($AUTORUN);
  my ($OS, $ARCH, $OSTYPE, $MARCH, @ARCHITECTURES) = OsArch();
  println $OSTYPE unless ($AUTORUN);
  
@@ -9,7 +9,7 @@
      println "configure: error: unsupported system '$OSTYPE'";
      exit 1;
  }
-@@ -215,6 +215,10 @@ if ($OS eq 'linux') {
+@@ -221,6 +221,10 @@ if ($OS eq 'linux') {
      println $OS_DISTRIBUTOR unless ($AUTORUN);
  }
  
@@ -20,7 +20,7 @@
  print "checking machine architecture... " unless ($AUTORUN);
  println $MARCH unless ($AUTORUN);
  unless ($MARCH =~ /x86_64/i || $MARCH =~ /i?86/i) {
-@@ -326,6 +330,16 @@ if ($OSTYPE =~ /linux/i) {
+@@ -332,6 +336,16 @@ if ($OSTYPE =~ /linux/i) {
      $EXEX = '';
      $OSINC = 'unix';
      $TOOLS = 'gcc' unless ($TOOLS);
@@ -37,11 +37,11 @@
  } elsif ($OSTYPE =~ /darwin/i) {
      $LPFX = 'lib';
      $OBJX = 'o';
-@@ -371,11 +385,11 @@ if ($TOOLS =~ /gcc$/) {
+@@ -377,11 +391,11 @@ if ($TOOLS =~ /gcc$/) {
  } elsif ($TOOLS eq 'clang') {
      $CPP  = 'clang++' unless ($CPP);
      $CC   = 'clang -c';
--    my $versionMin = '-mmacosx-version-min=10.6';
+-    my $versionMin = '-mmacosx-version-min=10.10';
 +    my $versionMin = '';
      $CP   = "$CPP -c $versionMin";
      if ($BITS ne '32_64') {
@@ -51,7 +51,7 @@
          $AR      = 'ar rc';
          $LD      = "clang $ARCH_FL";
          $LP      = "$CPP $versionMin $ARCH_FL";
-@@ -463,7 +477,7 @@ foreach my $href (DEPENDS()) {
+@@ -478,7 +492,7 @@ foreach my $href (DEPENDS()) {
              $I = $t if (-e $t);
          }
          push ( @L, File::Spec->catdir($OPT{$o}, 'lib') );
@@ -60,7 +60,7 @@
      }
      my ($i, $l) = find_lib($_, $I, @L);
      if (defined $i || $l) {
-@@ -881,8 +895,7 @@ EndText
+@@ -898,8 +912,7 @@ EndText
      L($F, "PIC     = $PIC") if ($PIC);
      if ($PKG{LNG} eq 'C') {
          if ($TOOLS =~ /clang/i) {

Modified: head/biology/ngs-sdk/pkg-plist
==============================================================================
--- head/biology/ngs-sdk/pkg-plist	Sat Aug 31 15:03:00 2019	(r510394)
+++ head/biology/ngs-sdk/pkg-plist	Sat Aug 31 15:09:47 2019	(r510395)
@@ -92,4 +92,4 @@ lib/libngs-adapt-c++.a
 lib/libngs-c++.a
 lib/libngs-sdk.so
 lib/libngs-sdk.so.2
-lib/libngs-sdk.so.2.9.6
+lib/libngs-sdk.so.2.10.0