svn commit: r482398 - in head/biology: . py-gtfparse

[Yuri Victorovich]

Author: yuri
Date: Fri Oct 19 02:03:40 2018
New Revision: 482398
URL: https://svnweb.freebsd.org/changeset/ports/482398

Log:
  New port: biology/py-gtfparse: Parsing tools for GTF (gene transfer format) files

Added:
  head/biology/py-gtfparse/
  head/biology/py-gtfparse/Makefile   (contents, props changed)
  head/biology/py-gtfparse/distinfo   (contents, props changed)
  head/biology/py-gtfparse/pkg-descr   (contents, props changed)
Modified:
  head/biology/Makefile

Modified: head/biology/Makefile
==============================================================================
--- head/biology/Makefile	Fri Oct 19 01:01:34 2018	(r482397)
+++ head/biology/Makefile	Fri Oct 19 02:03:40 2018	(r482398)
@@ -104,6 +104,7 @@
     SUBDIR += py-biopython
     SUBDIR += py-bx-python
     SUBDIR += py-cutadapt
+    SUBDIR += py-gtfparse
     SUBDIR += py-loompy
     SUBDIR += py-macs2
     SUBDIR += py-orange3-bioinformatics

Added: head/biology/py-gtfparse/Makefile
==============================================================================
--- /dev/null	00:00:00 1970	(empty, because file is newly added)
+++ head/biology/py-gtfparse/Makefile	Fri Oct 19 02:03:40 2018	(r482398)
@@ -0,0 +1,22 @@
+# $FreeBSD$
+
+PORTNAME=	gtfparse
+DISTVERSION=	1.2.0
+CATEGORIES=	biology python
+MASTER_SITES=	CHEESESHOP
+PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
+
+MAINTAINER=	yuri at FreeBSD.org
+COMMENT=	Parsing tools for GTF (gene transfer format) files
+
+LICENSE=	APACHE20
+
+RUN_DEPENDS=	${PYNUMPY} \
+		${PYTHON_PKGNAMEPREFIX}pandas>=0.15:math/py-pandas@${PY_FLAVOR}
+
+USES=		python
+USE_PYTHON=	distutils autoplist
+
+NO_ARCH=	yes
+
+.include <bsd.port.mk>

Added: head/biology/py-gtfparse/distinfo
==============================================================================
--- /dev/null	00:00:00 1970	(empty, because file is newly added)
+++ head/biology/py-gtfparse/distinfo	Fri Oct 19 02:03:40 2018	(r482398)
@@ -0,0 +1,3 @@
+TIMESTAMP = 1539913049
+SHA256 (gtfparse-1.2.0.tar.gz) = 2f27aa2b87eb43d613edabf27f9c11147dc595c8683b440ac1d88e9acdb85873
+SIZE (gtfparse-1.2.0.tar.gz) = 12601

Added: head/biology/py-gtfparse/pkg-descr
==============================================================================
--- /dev/null	00:00:00 1970	(empty, because file is newly added)
+++ head/biology/py-gtfparse/pkg-descr	Fri Oct 19 02:03:40 2018	(r482398)
@@ -0,0 +1,6 @@
+Tools to parse files in GTF (gene transfer format).
+
+GTF is a common format to exchange large portions of, or entire genotype
+information.
+
+WWW: https://github.com/openvax/gtfparse