svn commit: r470582 - in head/biology: . clustal-omega
Jason W. Bacon
jwb at FreeBSD.org
Mon May 21 22:15:28 UTC 2018
Author: jwb
Date: Mon May 21 22:15:26 2018
New Revision: 470582
URL: https://svnweb.freebsd.org/changeset/ports/470582
Log:
biology/clustal-omega: Multiple alignment of nucleic acid and protein, replaces clustalw
Approved by: jrm
Differential Revision: https://reviews.freebsd.org/D15516
Added:
head/biology/clustal-omega/
head/biology/clustal-omega/Makefile (contents, props changed)
head/biology/clustal-omega/distinfo (contents, props changed)
head/biology/clustal-omega/pkg-descr (contents, props changed)
head/biology/clustal-omega/pkg-plist (contents, props changed)
Modified:
head/biology/Makefile
Modified: head/biology/Makefile
==============================================================================
--- head/biology/Makefile Mon May 21 21:45:48 2018 (r470581)
+++ head/biology/Makefile Mon May 21 22:15:26 2018 (r470582)
@@ -19,6 +19,7 @@
SUBDIR += cd-hit
SUBDIR += cdbfasta
SUBDIR += chemeq
+ SUBDIR += clustal-omega
SUBDIR += clustalw
SUBDIR += clustalx
SUBDIR += consed
Added: head/biology/clustal-omega/Makefile
==============================================================================
--- /dev/null 00:00:00 1970 (empty, because file is newly added)
+++ head/biology/clustal-omega/Makefile Mon May 21 22:15:26 2018 (r470582)
@@ -0,0 +1,20 @@
+# $FreeBSD$
+
+PORTNAME= clustal-omega
+DISTVERSION= 1.2.4
+CATEGORIES= biology
+MASTER_SITES= http://www.clustal.org/omega/
+
+MAINTAINER= jwb at FreeBSD.org
+COMMENT= Multiple alignment of nucleic acid and protein, replaces clustalw
+
+LICENSE= GPLv2
+LICENSE_FILE= ${WRKSRC}/COPYING
+
+LIB_DEPENDS= libargtable2.so:devel/argtable
+
+USES= libtool localbase
+
+GNU_CONFIGURE= yes
+
+.include <bsd.port.mk>
Added: head/biology/clustal-omega/distinfo
==============================================================================
--- /dev/null 00:00:00 1970 (empty, because file is newly added)
+++ head/biology/clustal-omega/distinfo Mon May 21 22:15:26 2018 (r470582)
@@ -0,0 +1,3 @@
+TIMESTAMP = 1526846209
+SHA256 (clustal-omega-1.2.4.tar.gz) = 8683d2286d663a46412c12a0c789e755e7fd77088fb3bc0342bb71667f05a3ee
+SIZE (clustal-omega-1.2.4.tar.gz) = 1170516
Added: head/biology/clustal-omega/pkg-descr
==============================================================================
--- /dev/null 00:00:00 1970 (empty, because file is newly added)
+++ head/biology/clustal-omega/pkg-descr Mon May 21 22:15:26 2018 (r470582)
@@ -0,0 +1,8 @@
+Clustal Omega is the latest addition to the Clustal family. It offers a
+significant increase in scalability over previous versions, allowing hundreds
+of thousands of sequences to be aligned in only a few hours. It will also make
+use of multiple processors, where present. In addition, the quality of
+alignments is superior to previous versions, as measured by a range of popular
+benchmarks.
+
+WWW: http://www.clustal.org/omega/
Added: head/biology/clustal-omega/pkg-plist
==============================================================================
--- /dev/null 00:00:00 1970 (empty, because file is newly added)
+++ head/biology/clustal-omega/pkg-plist Mon May 21 22:15:26 2018 (r470582)
@@ -0,0 +1,32 @@
+bin/clustalo
+include/clustalo/clustal-omega-config.h
+include/clustalo/clustal-omega.h
+include/clustalo/clustal/hhalign_wrapper.h
+include/clustalo/clustal/ktuple_pair.h
+include/clustalo/clustal/log.h
+include/clustalo/clustal/mbed.h
+include/clustalo/clustal/muscle_tree.h
+include/clustalo/clustal/pair_dist.h
+include/clustalo/clustal/progress.h
+include/clustalo/clustal/seq.h
+include/clustalo/clustal/symmatrix.h
+include/clustalo/clustal/tree.h
+include/clustalo/clustal/util.h
+include/clustalo/clustal/weights.h
+include/clustalo/hhalign/general.h
+include/clustalo/hhalign/hhfunc.h
+include/clustalo/squid/gki.h
+include/clustalo/squid/gsi64.h
+include/clustalo/squid/msa.h
+include/clustalo/squid/rk.h
+include/clustalo/squid/sqfuncs.h
+include/clustalo/squid/squid.h
+include/clustalo/squid/sre_random.h
+include/clustalo/squid/ssi.h
+include/clustalo/squid/stockholm.h
+include/clustalo/squid/stopwatch.h
+include/clustalo/squid/vectorops.h
+include/clustalo/squid/version.h
+lib/libclustalo.a
+libdata/pkgconfig/clustalo.pc
+%%DOCSDIR%%/README
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