svn commit: r469835 - head/biology/py-biopython

[Yuri Victorovich]

Author: yuri
Date: Sun May 13 22:30:00 2018
New Revision: 469835
URL: https://svnweb.freebsd.org/changeset/ports/469835

Log:
  biology/py-biopython: Unbreak on python3; Add license
  
  Two items prevented python3 compatibility:
  * Breakage of ASCII codec due to non-ascii characters in README: https://github.com/biopython/biopython/issues/1649
  * The outdated dependency: print/py-reportlab1 instead of the modern version 3.X print/py-reportlab
  
  Port changes:
  * USES=python:2.7 -> USES=python
  * Add pre-configure that clears the README file
  * Add LICENSE/LICENSE_FILE
  
  Testing:
  * Ran the tutorial testcase http://biopython.org/DIST/docs/tutorial/Tutorial.html,
    particularly pdf writing through print/py-reportlab worked fine.
  
  Asked the upstream to clarify the acceptable dependency version: https://github.com/biopython/biopython/issues/1650
  
  Approved by:	portmgr blanket (unbreak for python3; add license)

Modified:
  head/biology/py-biopython/Makefile

Modified: head/biology/py-biopython/Makefile
==============================================================================
--- head/biology/py-biopython/Makefile	Sun May 13 21:46:05 2018	(r469834)
+++ head/biology/py-biopython/Makefile	Sun May 13 22:30:00 2018	(r469835)
@@ -3,6 +3,7 @@
 
 PORTNAME=	biopython
 PORTVERSION=	1.71
+PORTREVISION=	1
 CATEGORIES=	biology python
 MASTER_SITES=	http://www.biopython.org/DIST/
 PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
@@ -10,16 +11,22 @@ PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
 MAINTAINER=	mauricio at arareko.net
 COMMENT=	Collection of Python modules for bioinformatics
 
+LICENSE=	BSD3CLAUSE
+LICENSE_FILE=	${WRKSRC}/LICENSE.rst
+
 BUILD_DEPENDS=	${PYNUMPY}
 RUN_DEPENDS=	${PYNUMPY}
 
-USES=		python:2.7
+USES=		python
 USE_PYTHON=	distutils autoplist
 
 OPTIONS_DEFINE=	REPORTLAB
 OPTIONS_DEFAULT=	REPORTLAB
 
 REPORTLAB_DESC=	PDF support in Bio.Graphics module
-REPORTLAB_RUN_DEPENDS=	${PYTHON_PKGNAMEPREFIX}reportlab1>0:print/py-reportlab1@${FLAVOR}
+REPORTLAB_RUN_DEPENDS=	${PYTHON_PKGNAMEPREFIX}reportlab>0:print/py-reportlab@${FLAVOR}
+
+pre-configure: # unbreak for python3: README.rst can't be decoded with the ascii codec: https://github.com/biopython/biopython/issues/1649
+	@truncate -s 0 ${WRKSRC}/README.rst
 
 .include <bsd.port.mk>