svn commit: r474148 - in head/science: . libssm
Yuri Victorovich
yuri at FreeBSD.org
Sun Jul 8 00:39:50 UTC 2018
Author: yuri
Date: Sun Jul 8 00:39:48 2018
New Revision: 474148
URL: https://svnweb.freebsd.org/changeset/ports/474148
Log:
New port: science/libssm: C++ toolkit for superposition of macromolecules
Added:
head/science/libssm/
head/science/libssm/Makefile (contents, props changed)
head/science/libssm/distinfo (contents, props changed)
head/science/libssm/pkg-descr (contents, props changed)
head/science/libssm/pkg-plist (contents, props changed)
Modified:
head/science/Makefile
Modified: head/science/Makefile
==============================================================================
--- head/science/Makefile Sun Jul 8 00:24:55 2018 (r474147)
+++ head/science/Makefile Sun Jul 8 00:39:48 2018 (r474148)
@@ -100,6 +100,7 @@
SUBDIR += liblinear
SUBDIR += liboglappth
SUBDIR += libquantum
+ SUBDIR += libssm
SUBDIR += libsvm
SUBDIR += libsvm-python
SUBDIR += libxc
Added: head/science/libssm/Makefile
==============================================================================
--- /dev/null 00:00:00 1970 (empty, because file is newly added)
+++ head/science/libssm/Makefile Sun Jul 8 00:39:48 2018 (r474148)
@@ -0,0 +1,31 @@
+# $FreeBSD$
+
+PORTNAME= libssm
+DISTVERSION= 1.4
+CATEGORIES= science
+MASTER_SITES= ftp://ftp.ccp4.ac.uk/opensource/
+DISTNAME= ssm-${DISTVERSION}
+
+MAINTAINER= yuri at FreeBSD.org
+COMMENT= C++ toolkit for superposition of macromolecules
+
+LICENSE= GPLv3
+LICENSE_FILE= ${WRKSRC}/COPYING
+
+LIB_DEPENDS= libccp4c.so:science/libccp4 \
+ libmmdb2.so:science/mmdb2
+
+USES= gmake libtool localbase:ldflags
+GNU_CONFIGURE= yes
+CONFIGURE_ARGS= --enable-shared --disable-static --enable-ccp4 --with-mmdb=${LOCALBASE}
+INSTALL_TARGET= install-strip
+USE_LDCONFIG= yes
+
+CFLAGS+= -fPIC
+FFLAGS+= -fPIC
+
+xpost-configure:
+ ${REINPLACE_CMD} -e 's| -Wl,--as-needed||; s| -Wl,--no-as-needed||' ${WRKSRC}/Makefile
+ ${REINPLACE_CMD} -e 's|^archive_cmds=|wl="-Wl,"; archive_cmds=|' ${WRKSRC}/libtool # wl is missing otherwise for some reason
+
+.include <bsd.port.mk>
Added: head/science/libssm/distinfo
==============================================================================
--- /dev/null 00:00:00 1970 (empty, because file is newly added)
+++ head/science/libssm/distinfo Sun Jul 8 00:39:48 2018 (r474148)
@@ -0,0 +1,3 @@
+TIMESTAMP = 1531009874
+SHA256 (ssm-1.4.tar.gz) = ea1a57d019bd69ab04e1b7c4faa2f8451584474a6fc16285c2211ef9f53b2704
+SIZE (ssm-1.4.tar.gz) = 424785
Added: head/science/libssm/pkg-descr
==============================================================================
--- /dev/null 00:00:00 1970 (empty, because file is newly added)
+++ head/science/libssm/pkg-descr Sun Jul 8 00:39:48 2018 (r474148)
@@ -0,0 +1,9 @@
+SSM is a macromolecular coordinate superposition library, written by Eugene
+Krissinel of the EBI.
+
+The library implements the SSM algorithm of protein structure comparison in
+three dimensions, which includes an original procedure of matching graphs built
+on the protein's secondary-structure elements, followed by an iterative
+three-dimensional alignment of protein backbone Calpha atoms.
+
+WWW: https://launchpad.net/ssm
Added: head/science/libssm/pkg-plist
==============================================================================
--- /dev/null 00:00:00 1970 (empty, because file is newly added)
+++ head/science/libssm/pkg-plist Sun Jul 8 00:39:48 2018 (r474148)
@@ -0,0 +1,12 @@
+bin/superpose
+include/ssm/ssm_align.h
+include/ssm/ssm_csia.h
+include/ssm/ssm_defs.h
+include/ssm/ssm_graph.h
+include/ssm/ssm_malign.h
+include/ssm/ssm_superpose.h
+include/ssm/ssm_vxedge.h
+lib/libssm.so
+lib/libssm.so.2
+lib/libssm.so.2.0.0
+libdata/pkgconfig/ssm.pc
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