svn commit: r476578 - in head/biology: . py-orange3-single-cell

[Yuri Victorovich]

Author: yuri
Date: Tue Aug  7 07:50:40 2018
New Revision: 476578
URL: https://svnweb.freebsd.org/changeset/ports/476578

Log:
  New port: biology/py-orange3-single-cell: Orange add-on for gene expression of single cell data

Added:
  head/biology/py-orange3-single-cell/
  head/biology/py-orange3-single-cell/Makefile   (contents, props changed)
  head/biology/py-orange3-single-cell/distinfo   (contents, props changed)
  head/biology/py-orange3-single-cell/pkg-descr   (contents, props changed)
Modified:
  head/biology/Makefile

Modified: head/biology/Makefile
==============================================================================
--- head/biology/Makefile	Tue Aug  7 07:46:24 2018	(r476577)
+++ head/biology/Makefile	Tue Aug  7 07:50:40 2018	(r476578)
@@ -106,6 +106,7 @@
     SUBDIR += py-cutadapt
     SUBDIR += py-macs2
     SUBDIR += py-orange3-bioinformatics
+    SUBDIR += py-orange3-single-cell
     SUBDIR += py-pysam
     SUBDIR += pycogent
     SUBDIR += pyfasta

Added: head/biology/py-orange3-single-cell/Makefile
==============================================================================
--- /dev/null	00:00:00 1970	(empty, because file is newly added)
+++ head/biology/py-orange3-single-cell/Makefile	Tue Aug  7 07:50:40 2018	(r476578)
@@ -0,0 +1,35 @@
+# $FreeBSD$
+
+PORTNAME=	orange3-single-cell
+DISTVERSION=	0.7.0
+CATEGORIES=	biology python
+PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
+
+MAINTAINER=	yuri at FreeBSD.org
+COMMENT=	Orange add-on for gene expression of single cell data
+
+LICENSE=	AGPLv3+
+
+RUN_DEPENDS=	orange3>0:misc/orange3 \
+		${PYTHON_PKGNAMEPREFIX}orange3-bioinformatics>0:biology/py-orange3-bioinformatics@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}joblib>0:devel/py-joblib@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}networkx>0:math/py-networkx@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}pandas>=0.20:math/py-pandas@${PY_FLAVOR}
+
+USES=		python:3.4+
+USE_GITHUB=	yes
+GH_ACCOUNT=	biolab
+USE_PYTHON=	distutils autoplist
+
+OPTIONS_DEFINE=	DOCS
+
+DOCS_BUILD_DEPENDS=	gmake:devel/gmake \
+			${PYTHON_PKGNAMEPREFIX}sphinx>0:textproc/py-sphinx@${PY_FLAVOR}
+
+pre-build-DOCS-on:
+	@cd ${WRKSRC}/doc && ${SETENV} ${MAKE_ENV} ${GMAKE} html htmlhelp SPHINXBUILD=${LOCALBASE}/bin/sphinx-build-${PYTHON_VER}
+
+pre-build-DOCS-off:
+	@${REINPLACE_CMD} "s|^    include_documentation|    #include_documentation|" ${WRKSRC}/setup.py
+
+.include <bsd.port.mk>

Added: head/biology/py-orange3-single-cell/distinfo
==============================================================================
--- /dev/null	00:00:00 1970	(empty, because file is newly added)
+++ head/biology/py-orange3-single-cell/distinfo	Tue Aug  7 07:50:40 2018	(r476578)
@@ -0,0 +1,3 @@
+TIMESTAMP = 1533608220
+SHA256 (biolab-orange3-single-cell-0.7.0_GH0.tar.gz) = 73db7716d0e9f4c7d17a41770e2b72d94266a49b6ddbf79aba430c7bbcfa7753
+SIZE (biolab-orange3-single-cell-0.7.0_GH0.tar.gz) = 15862251

Added: head/biology/py-orange3-single-cell/pkg-descr
==============================================================================
--- /dev/null	00:00:00 1970	(empty, because file is newly added)
+++ head/biology/py-orange3-single-cell/pkg-descr	Tue Aug  7 07:50:40 2018	(r476578)
@@ -0,0 +1,4 @@
+The Single Cell add-on for Orange3 adds functionality for analysis of single
+cell data.
+
+WWW: https://singlecell.biolab.si/