svn commit: r476246 - head/biology/samtools
Fernando Apesteguía
fernape at FreeBSD.org
Thu Aug 2 19:28:37 UTC 2018
Author: fernape
Date: Thu Aug 2 19:28:36 2018
New Revision: 476246
URL: https://svnweb.freebsd.org/changeset/ports/476246
Log:
biology/samtools: update to 1.9
PR: 230171
Submitted by: ndowens.fbsd at yandex.com
Approved by: tcberner (mentor)
Differential Revision: https://reviews.freebsd.org/D16569
Modified:
head/biology/samtools/Makefile
head/biology/samtools/distinfo
Modified: head/biology/samtools/Makefile
==============================================================================
--- head/biology/samtools/Makefile Thu Aug 2 19:27:13 2018 (r476245)
+++ head/biology/samtools/Makefile Thu Aug 2 19:28:36 2018 (r476246)
@@ -2,7 +2,7 @@
# $FreeBSD$
PORTNAME= samtools
-PORTVERSION= 1.6
+DISTVERSION= 1.9
CATEGORIES= biology
MAINTAINER= cartwright at asu.edu
@@ -15,16 +15,15 @@ BUILD_DEPENDS= htslib>=1.6:biology/htslib
LIB_DEPENDS= libhts.so:biology/htslib
TEST_DEPENDS= bash:shells/bash
+USES= autoreconf gmake localbase ncurses \
+ perl5 python:env shebangfix
+
USE_GITHUB= yes
-USES= autoreconf gmake ncurses perl5 python:env shebangfix
USE_PERL5= test
GNU_CONFIGURE= yes
SUB_FILES= pkg-message
SHEBANG_FILES= misc/*.pl misc/*.py misc/plot-bamstats test/test.pl
-
-CPPFLAGS+= -I${LOCALBASE}/include
-LDFLAGS+= -L${LOCALBASE}/lib
TEST_TARGET= test
Modified: head/biology/samtools/distinfo
==============================================================================
--- head/biology/samtools/distinfo Thu Aug 2 19:27:13 2018 (r476245)
+++ head/biology/samtools/distinfo Thu Aug 2 19:28:36 2018 (r476246)
@@ -1,3 +1,3 @@
-TIMESTAMP = 1508304738
-SHA256 (samtools-samtools-1.6_GH0.tar.gz) = c0d1ffefe441297ee0eec0e032ac3131519f82fd1a11d38fbcec19e2d5822b28
-SIZE (samtools-samtools-1.6_GH0.tar.gz) = 4014195
+TIMESTAMP = 1532906637
+SHA256 (samtools-samtools-1.9_GH0.tar.gz) = 211600bd180d01030b3fe25baa7ae1c105106bed6c3f8d993f41dd278d44c637
+SIZE (samtools-samtools-1.9_GH0.tar.gz) = 4098992
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