svn commit: r432959 - in head/science: . libgeodecomp libgeodecomp/files

Nikolai Lifanov lifanov at FreeBSD.org
Tue Jan 31 23:38:00 UTC 2017 

Author: lifanov
Date: Tue Jan 31 23:37:58 2017
New Revision: 432959
URL: https://svnweb.freebsd.org/changeset/ports/432959

Log:
  add science/libgeodecomp - auto-parallelizing library for computer simulations
  
  LibGeoDecomp (Library for Geometric Decomposition codes) is an
  auto-parallelizing library for computer simulations. It is specifically targeted
  computational science applications in the context of supercomputers and
  heterogeneous systems. The library eases development of such tightly coupled
  codes by essentially taking over the parallel programming: it handles both, the
  parallelization itself and parameter tuning. This enables scientists to focus on
  their simulation code, rather than the technical details of the parallel
  computer.
  
  PR:		213688
  Submitted by:	Kurt Kanzenbach <kurt at kmk-computers.de>
  Reviewed by:	matthew
  Approved by:	matthew (mentor)
  Differential Revision:	https://reviews.freebsd.org/D9390

Added:
  head/science/libgeodecomp/
  head/science/libgeodecomp/Makefile   (contents, props changed)
  head/science/libgeodecomp/distinfo   (contents, props changed)
  head/science/libgeodecomp/files/
  head/science/libgeodecomp/files/patch-lib_libflatarray_src_aligned__allocator.hpp   (contents, props changed)
  head/science/libgeodecomp/files/patch-src_CMakeLists.txt   (contents, props changed)
  head/science/libgeodecomp/pkg-descr   (contents, props changed)
  head/science/libgeodecomp/pkg-plist   (contents, props changed)
Modified:
  head/science/Makefile

Modified: head/science/Makefile
==============================================================================
--- head/science/Makefile	Tue Jan 31 21:25:30 2017	(r432958)
+++ head/science/Makefile	Tue Jan 31 23:37:58 2017	(r432959)
@@ -70,6 +70,7 @@
     SUBDIR += lamprop
     SUBDIR += libaec
     SUBDIR += libctl
+    SUBDIR += libgeodecomp
     SUBDIR += libghemical
     SUBDIR += libint
     SUBDIR += libkml

Added: head/science/libgeodecomp/Makefile
==============================================================================
--- /dev/null	00:00:00 1970	(empty, because file is newly added)
+++ head/science/libgeodecomp/Makefile	Tue Jan 31 23:37:58 2017	(r432959)
@@ -0,0 +1,43 @@
+# Created by: Kurt Kanzenbach <kurt at kmk-computers.de>
+# $FreeBSD$
+
+PORTNAME=		libgeodecomp
+PORTVERSION=		0.4.0
+CATEGORIES=		science devel
+MASTER_SITES=		http://www.libgeodecomp.org/archive/
+
+MAINTAINER=		kurt at kmk-computers.de
+COMMENT=		LibGeoDecomp is an auto-parallelizing library for computer simulations
+
+LICENSE=		BSL
+LICENSE_FILE=		${WRKSRC}/LICENSE
+
+LIB_DEPENDS=		libboost_system.so:devel/boost-libs libboost_date_time.so:devel/boost-libs \
+			libboost_filesystem.so:devel/boost-libs
+
+USES=			cmake:outsource compiler:c++11-lib
+USE_GCC=		yes
+USE_LDCONFIG=		yes
+
+CMAKE_ARGS=		-DWITH_CUDA:BOOL=FALSE -DWITH_VISIT:BOOL=FALSE \
+			-DWITH_HPX:BOOL=FALSE -DWITH_OPENCL:BOOL=FALSE \
+			-DWITH_OPENCV:BOOL=FALSE -DWITH_TYPEMAPS=FALSE
+
+OPTIONS_DEFINE=		MPI QT4 SILO SCOTCH
+OPTIONS_DEFAULT=	MPI QT4 SILO SCOTCH
+
+MPI_LIB_DEPENDS=	libmpich.so:net/mpich2
+MPI_CMAKE_BOOL=		WITH_MPI
+
+QT4_USE=		QT4=corelib,gui,opengl,qmake_build,moc_build,rcc_build,uic_build
+QT4_CMAKE_BOOL=		WITH_QT
+
+SILO_DESC=		Enable Silo dependend output
+SILO_LIB_DEPENDS=	libsiloh5.so:science/silo
+SILO_CMAKE_BOOL=	WITH_SILO
+
+SCOTCH_DESC=		Enable graph partitioning based on Scotch/Scotch-PT
+SCOTCH_BUILD_DEPENDS=	${LOCALBASE}/lib/libscotch.a:cad/scotch
+SCOTCH_CMAKE_BOOL=	WITH_SCOTCH
+
+.include <bsd.port.mk>

Added: head/science/libgeodecomp/distinfo
==============================================================================
--- /dev/null	00:00:00 1970	(empty, because file is newly added)
+++ head/science/libgeodecomp/distinfo	Tue Jan 31 23:37:58 2017	(r432959)
@@ -0,0 +1,3 @@
+TIMESTAMP = 1476973737
+SHA256 (libgeodecomp-0.4.0.tar.gz) = f1a4fbc0c04952a148cbe186f36fc9e2307f7b0ecaf6960b56f2135ca3b8fa4e
+SIZE (libgeodecomp-0.4.0.tar.gz) = 1022767

Added: head/science/libgeodecomp/files/patch-lib_libflatarray_src_aligned__allocator.hpp
==============================================================================
--- /dev/null	00:00:00 1970	(empty, because file is newly added)
+++ head/science/libgeodecomp/files/patch-lib_libflatarray_src_aligned__allocator.hpp	Tue Jan 31 23:37:58 2017	(r432959)
@@ -0,0 +1,16 @@
+--- lib/libflatarray/src/aligned_allocator.hpp.orig	2014-10-28 09:12:48 UTC
++++ lib/libflatarray/src/aligned_allocator.hpp
+@@ -8,13 +8,7 @@
+ #ifndef FLAT_ARRAY_ALIGNED_ALLOCATOR_HPP
+ #define FLAT_ARRAY_ALIGNED_ALLOCATOR_HPP
+ 
+-#ifdef __APPLE__
+ #include <cstddef>
+-#include <stdlib.h>
+-#else
+-#include <malloc.h>
+-#endif
+-
+ #include <memory>
+ 
+ namespace LibFlatArray {

Added: head/science/libgeodecomp/files/patch-src_CMakeLists.txt
==============================================================================
--- /dev/null	00:00:00 1970	(empty, because file is newly added)
+++ head/science/libgeodecomp/files/patch-src_CMakeLists.txt	Tue Jan 31 23:37:58 2017	(r432959)
@@ -0,0 +1,11 @@
+--- src/CMakeLists.txt.orig	2016-10-17 18:06:32 UTC
++++ src/CMakeLists.txt
+@@ -575,7 +575,7 @@ Version: ${PACKAGE_VERSION}
+ Libs: ${INSTALLER_LINK_FLAGS}
+ Cflags: -I${CMAKE_INSTALL_PREFIX}/include ${PKG_CONFIG_INCLUDE_FLAGS}
+ ")
+-install(FILES "${CMAKE_BINARY_DIR}/${PACKAGE_NAME}.pc" DESTINATION "${LIB_DIR}/pkgconfig")
++install(FILES "${CMAKE_BINARY_DIR}/${PACKAGE_NAME}.pc" DESTINATION "libdata/pkgconfig")
+ 
+ set(ConfigPackageLocation lib/cmake/${PACKAGE_NAME})
+ 

Added: head/science/libgeodecomp/pkg-descr
==============================================================================
--- /dev/null	00:00:00 1970	(empty, because file is newly added)
+++ head/science/libgeodecomp/pkg-descr	Tue Jan 31 23:37:58 2017	(r432959)
@@ -0,0 +1,10 @@
+LibGeoDecomp (Library for Geometric Decomposition codes) is an
+auto-parallelizing library for computer simulations. It is specifically targeted
+computational science applications in the context of supercomputers and
+heterogeneous systems. The library eases development of such tightly coupled
+codes by essentially taking over the parallel programming: it handles both, the
+parallelization itself and parameter tuning. This enables scientists to focus on
+their simulation code, rather than the technical details of the parallel
+computer.
+
+WWW: http://www.libgeodecomp.org/

Added: head/science/libgeodecomp/pkg-plist
==============================================================================
--- /dev/null	00:00:00 1970	(empty, because file is newly added)
+++ head/science/libgeodecomp/pkg-plist	Tue Jan 31 23:37:58 2017	(r432959)
@@ -0,0 +1,195 @@
+include/libflatarray/aggregated_member_size.hpp
+include/libflatarray/aligned_allocator.hpp
+include/libflatarray/api_traits.hpp
+include/libflatarray/coord.hpp
+include/libflatarray/cuda_allocator.hpp
+include/libflatarray/detail/dual_callback_helper.hpp
+include/libflatarray/detail/get_set_instance_functor.hpp
+include/libflatarray/detail/load_save_functor.hpp
+include/libflatarray/detail/macros.hpp
+include/libflatarray/detail/offset.hpp
+include/libflatarray/detail/set_byte_size_functor.hpp
+include/libflatarray/detail/short_vec_avx_float_8.hpp
+include/libflatarray/detail/short_vec_qpx_double_4.hpp
+include/libflatarray/detail/short_vec_sse_double_8.hpp
+include/libflatarray/detail/short_vec_sse_float_16.hpp
+include/libflatarray/detail/short_vec_sse_float_8.hpp
+include/libflatarray/detail/sqrt_reference.hpp
+include/libflatarray/flat_array.hpp
+include/libflatarray/macros.hpp
+include/libflatarray/member_ptr_to_offset.hpp
+include/libflatarray/number_of_members.hpp
+include/libflatarray/short_vec.hpp
+include/libflatarray/soa_accessor.hpp
+include/libflatarray/soa_array.hpp
+include/libflatarray/soa_grid.hpp
+include/libflatarray/testbed/benchmark.hpp
+include/libflatarray/testbed/cpu_benchmark.hpp
+include/libflatarray/testbed/evaluate.hpp
+include/libflatarray/testbed/gpu_benchmark.hpp
+include/libgeodecomp.h
+include/libgeodecomp/communication/mpilayer.h
+include/libgeodecomp/communication/patchlink.h
+include/libgeodecomp/communication/serialization.h
+include/libgeodecomp/communication/typemaps.h
+include/libgeodecomp/config.h
+include/libgeodecomp/geometry/coord.h
+include/libgeodecomp/geometry/coordbox.h
+include/libgeodecomp/geometry/cudaregion.h
+include/libgeodecomp/geometry/fixedcoord.h
+include/libgeodecomp/geometry/floatcoord.h
+include/libgeodecomp/geometry/partitionmanager.h
+include/libgeodecomp/geometry/partitions/checkerboardingpartition.h
+include/libgeodecomp/geometry/partitions/hilbertpartition.h
+include/libgeodecomp/geometry/partitions/hindexingpartition.h
+include/libgeodecomp/geometry/partitions/partition.h
+include/libgeodecomp/geometry/partitions/ptscotchpartition.h
+include/libgeodecomp/geometry/partitions/recursivebisectionpartition.h
+include/libgeodecomp/geometry/partitions/scotchpartition.h
+include/libgeodecomp/geometry/partitions/spacefillingcurve.h
+include/libgeodecomp/geometry/partitions/stripingpartition.h
+include/libgeodecomp/geometry/partitions/zcurvepartition.h
+include/libgeodecomp/geometry/region.h
+include/libgeodecomp/geometry/regionstreakiterator.h
+include/libgeodecomp/geometry/stencils.h
+include/libgeodecomp/geometry/streak.h
+include/libgeodecomp/geometry/topologies.h
+include/libgeodecomp/geometry/voronoimesher.h
+include/libgeodecomp/io/asciiwriter.h
+include/libgeodecomp/io/bovwriter.h
+include/libgeodecomp/io/collectingwriter.h
+include/libgeodecomp/io/hpxwritercollector.h
+include/libgeodecomp/io/hpxwritersink.h
+include/libgeodecomp/io/hpxwritersinkserver.h
+include/libgeodecomp/io/imagepainter.h
+include/libgeodecomp/io/initializer.h
+include/libgeodecomp/io/ioexception.h
+include/libgeodecomp/io/logger.h
+include/libgeodecomp/io/memorywriter.h
+include/libgeodecomp/io/mockinitializer.h
+include/libgeodecomp/io/mocksteerer.h
+include/libgeodecomp/io/mockwriter.h
+include/libgeodecomp/io/mpiio.h
+include/libgeodecomp/io/mpiioinitializer.h
+include/libgeodecomp/io/mpiiowriter.h
+include/libgeodecomp/io/parallelmemorywriter.h
+include/libgeodecomp/io/parallelmpiiowriter.h
+include/libgeodecomp/io/paralleltestwriter.h
+include/libgeodecomp/io/parallelwriter.h
+include/libgeodecomp/io/plotter.h
+include/libgeodecomp/io/ppmwriter.h
+include/libgeodecomp/io/qtwidgetwriter.h
+include/libgeodecomp/io/remotesteerer.h
+include/libgeodecomp/io/serialbovwriter.h
+include/libgeodecomp/io/silowriter.h
+include/libgeodecomp/io/simplecellplotter.h
+include/libgeodecomp/io/simpleinitializer.h
+include/libgeodecomp/io/steerer.h
+include/libgeodecomp/io/testinitializer.h
+include/libgeodecomp/io/teststeerer.h
+include/libgeodecomp/io/testwriter.h
+include/libgeodecomp/io/tracingwriter.h
+include/libgeodecomp/io/visitwriter.h
+include/libgeodecomp/io/writer.h
+include/libgeodecomp/loadbalancer/biasbalancer.h
+include/libgeodecomp/loadbalancer/loadbalancer.h
+include/libgeodecomp/loadbalancer/mockbalancer.h
+include/libgeodecomp/loadbalancer/noopbalancer.h
+include/libgeodecomp/loadbalancer/oozebalancer.h
+include/libgeodecomp/loadbalancer/randombalancer.h
+include/libgeodecomp/loadbalancer/tracingbalancer.h
+include/libgeodecomp/misc/apitraits.h
+include/libgeodecomp/misc/chronometer.h
+include/libgeodecomp/misc/clonable.h
+include/libgeodecomp/misc/color.h
+include/libgeodecomp/misc/cudautil.h
+include/libgeodecomp/misc/fpscounter.h
+include/libgeodecomp/misc/math.h
+include/libgeodecomp/misc/mpitest.h
+include/libgeodecomp/misc/nonpodtestcell.h
+include/libgeodecomp/misc/optimizer.h
+include/libgeodecomp/misc/palette.h
+include/libgeodecomp/misc/patternoptimizer.h
+include/libgeodecomp/misc/quickpalette.h
+include/libgeodecomp/misc/random.h
+include/libgeodecomp/misc/scopedtimer.h
+include/libgeodecomp/misc/simplexoptimizer.h
+include/libgeodecomp/misc/simulationfactory.h
+include/libgeodecomp/misc/simulationparameters.h
+include/libgeodecomp/misc/stdcontaineroverloads.h
+include/libgeodecomp/misc/stringops.h
+include/libgeodecomp/misc/stringvec.h
+include/libgeodecomp/misc/tempfile.h
+include/libgeodecomp/misc/testcell.h
+include/libgeodecomp/misc/testhelper.h
+include/libgeodecomp/parallelization/cacheblockingsimulator.h
+include/libgeodecomp/parallelization/cudasimulator.h
+include/libgeodecomp/parallelization/distributedsimulator.h
+include/libgeodecomp/parallelization/hiparsimulator.h
+include/libgeodecomp/parallelization/hiparsimulator/commonstepper.h
+include/libgeodecomp/parallelization/hiparsimulator/cudastepper.h
+include/libgeodecomp/parallelization/hiparsimulator/multicorestepper.h
+include/libgeodecomp/parallelization/hiparsimulator/offsethelper.h
+include/libgeodecomp/parallelization/hiparsimulator/openclstepper.h
+include/libgeodecomp/parallelization/hiparsimulator/parallelwriteradapter.h
+include/libgeodecomp/parallelization/hiparsimulator/steereradapter.h
+include/libgeodecomp/parallelization/hiparsimulator/stepper.h
+include/libgeodecomp/parallelization/hiparsimulator/updategroup.h
+include/libgeodecomp/parallelization/hiparsimulator/vanillastepper.h
+include/libgeodecomp/parallelization/hpxsimulator.h
+include/libgeodecomp/parallelization/hpxsimulator/createupdategroups.h
+include/libgeodecomp/parallelization/hpxsimulator/hpxstepper.h
+include/libgeodecomp/parallelization/hpxsimulator/patchlink.h
+include/libgeodecomp/parallelization/hpxsimulator/updategroup.h
+include/libgeodecomp/parallelization/hpxsimulator/updategroupserver.h
+include/libgeodecomp/parallelization/mocksimulator.h
+include/libgeodecomp/parallelization/monolithicsimulator.h
+include/libgeodecomp/parallelization/serialsimulator.h
+include/libgeodecomp/parallelization/simulator.h
+include/libgeodecomp/parallelization/stripingsimulator.h
+include/libgeodecomp/storage/boxcell.h
+include/libgeodecomp/storage/collectioninterface.h
+include/libgeodecomp/storage/containercell.h
+include/libgeodecomp/storage/coordmap.h
+include/libgeodecomp/storage/cudaarray.h
+include/libgeodecomp/storage/cudagrid.h
+include/libgeodecomp/storage/dataaccessor.h
+include/libgeodecomp/storage/defaultfilter.h
+include/libgeodecomp/storage/displacedgrid.h
+include/libgeodecomp/storage/filter.h
+include/libgeodecomp/storage/filterbase.h
+include/libgeodecomp/storage/fixedarray.h
+include/libgeodecomp/storage/fixedneighborhood.h
+include/libgeodecomp/storage/grid.h
+include/libgeodecomp/storage/gridbase.h
+include/libgeodecomp/storage/gridtypeselector.h
+include/libgeodecomp/storage/gridvecconv.h
+include/libgeodecomp/storage/image.h
+include/libgeodecomp/storage/linepointerassembly.h
+include/libgeodecomp/storage/linepointerneighborhood.h
+include/libgeodecomp/storage/linepointerupdatefunctor.h
+include/libgeodecomp/storage/meshlessadapter.h
+include/libgeodecomp/storage/mockpatchaccepter.h
+include/libgeodecomp/storage/multicontainercell.h
+include/libgeodecomp/storage/neighborhoodadapter.h
+include/libgeodecomp/storage/neighborhooditerator.h
+include/libgeodecomp/storage/patchaccepter.h
+include/libgeodecomp/storage/patchbuffer.h
+include/libgeodecomp/storage/patchbufferfixed.h
+include/libgeodecomp/storage/patchprovider.h
+include/libgeodecomp/storage/pointerneighborhood.h
+include/libgeodecomp/storage/selector.h
+include/libgeodecomp/storage/sellcsigmasparsematrixcontainer.h
+include/libgeodecomp/storage/serializationbuffer.h
+include/libgeodecomp/storage/simplefilter.h
+include/libgeodecomp/storage/soagrid.h
+include/libgeodecomp/storage/unstructuredgrid.h
+include/libgeodecomp/storage/updatefunctor.h
+include/libgeodecomp/storage/updatefunctortestbase.h
+include/libgeodecomp/storage/vanillaupdatefunctor.h
+lib/cmake/libgeodecomp/libgeodecomp-targets-%%CMAKE_BUILD_TYPE%%.cmake
+lib/cmake/libgeodecomp/libgeodecomp-targets.cmake
+lib/cmake/libgeodecomp/libgeodecompConfig.cmake
+lib/cmake/libgeodecomp/libgeodecompConfigVersion.cmake
+lib/libgeodecomp.so
+libdata/pkgconfig/libgeodecomp.pc

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