svn commit: r431331 - head/biology/diamond

[Joseph Mingrone]

Author: jrm
Date: Thu Jan 12 23:23:19 2017
New Revision: 431331
URL: https://svnweb.freebsd.org/changeset/ports/431331

Log:
  biology/diamond: Update to version 0.8.31.
  
  Upstream changelog:
  
    - Added compositional score adjustments (option --comp-based-stats
      (0,1)). This is a useful feature for filtering false positive hits and
      is enabled by default.
  
    - Removed --single-domain option and replaced by --max-hsps, to set the
      maximum number of Hsps per query/subject pair, to be consistent with
      BLAST. This option is set to 1 by default as getting more than 1 Hsp
      per subject seems to be confusing users.
  
    - Added option --no-self-hits to filter identical self-hits.
  
  Approved by:	AMDmi3 (mentor)
  Differential Revision:	https://reviews.freebsd.org/D9134

Modified:
  head/biology/diamond/Makefile
  head/biology/diamond/distinfo

Modified: head/biology/diamond/Makefile
==============================================================================
--- head/biology/diamond/Makefile	Thu Jan 12 23:21:15 2017	(r431330)
+++ head/biology/diamond/Makefile	Thu Jan 12 23:23:19 2017	(r431331)
@@ -1,7 +1,7 @@
 # $FreeBSD$
 
 PORTNAME=	diamond
-PORTVERSION=	0.8.30
+PORTVERSION=	0.8.31
 DISTVERSIONPREFIX=v
 CATEGORIES=	biology
 

Modified: head/biology/diamond/distinfo
==============================================================================
--- head/biology/diamond/distinfo	Thu Jan 12 23:21:15 2017	(r431330)
+++ head/biology/diamond/distinfo	Thu Jan 12 23:23:19 2017	(r431331)
@@ -1,3 +1,3 @@
-TIMESTAMP = 1483113104
-SHA256 (bbuchfink-diamond-v0.8.30_GH0.tar.gz) = ee138e4241c2712d6ce967785474312c52a45c6b56715b00e2abf759605e1fbb
-SIZE (bbuchfink-diamond-v0.8.30_GH0.tar.gz) = 329097
+TIMESTAMP = 1484137862
+SHA256 (bbuchfink-diamond-v0.8.31_GH0.tar.gz) = b89fec7665346d80dd3e8e0c7fb599117cd0f6c9831cf568dd08bf9b894b075a
+SIZE (bbuchfink-diamond-v0.8.31_GH0.tar.gz) = 335317