svn commit: r301234 - in head/science/minc2: . files
Niclas Zeising
zeising at FreeBSD.org
Fri Jul 20 16:33:33 UTC 2012
Author: zeising
Date: Fri Jul 20 16:33:32 2012
New Revision: 301234
URL: http://svn.freebsd.org/changeset/ports/301234
Log:
Update to version 2.0.18 [1]
Fix build with clang [2]
Change WWW in pkg-descr and pkg-message to point to current web side [3]
PR: ports/169925 [1]
Submitted by: Jason Bacon <jwbacon at tds.net> (maintainer) [1], kwm [2], [3]
Approved by: maintainer, kwm (mentor)
Added:
head/science/minc2/files/
head/science/minc2/files/patch-conversion__minctoecat__machine_indep.c (contents, props changed)
Modified:
head/science/minc2/Makefile
head/science/minc2/distinfo
head/science/minc2/pkg-descr
head/science/minc2/pkg-message
head/science/minc2/pkg-plist
Modified: head/science/minc2/Makefile
==============================================================================
--- head/science/minc2/Makefile Fri Jul 20 16:32:07 2012 (r301233)
+++ head/science/minc2/Makefile Fri Jul 20 16:33:32 2012 (r301234)
@@ -16,25 +16,23 @@
# Of course, the netcdf port must be installed first.
PORTNAME= minc
-PORTVERSION= 2.0.09
-PORTREVISION= 1
+PORTVERSION= 2.0.18
CATEGORIES= science biology
-MASTER_SITES= http://www.bic.mni.mcgill.ca/users/bert/ \
- http://www.neuro.mcw.edu/~bacon/Ports/distfiles/
+MASTER_SITES= http://www.nitrc.org/frs/download.php/801/
MAINTAINER= jwbacon at tds.net
COMMENT= Medical Imaging NetCDF
LIB_DEPENDS= netcdf.4:${PORTSDIR}/science/netcdf \
- hdf5.0:${PORTSDIR}/science/hdf5
+ hdf5:${PORTSDIR}/science/hdf5
USE_AUTOTOOLS= libtool
USE_LDCONFIG= yes
-CPPFLAGS+= ${PTHREAD_CFLAGS} -I${LOCALBASE}/include
+CPPFLAGS+= ${PTHREAD_CFLAGS} -I${LOCALBASE}/include -DH5_USE_16_API
LDFLAGS+= -L${LOCALBASE}/lib ${PTHREAD_LIBS}
CONFIGURE_ARGS= --enable-shared=yes --enable-static=yes
-CONFLICTS= minc-1*
+CONFLICTS= minc-1* zh-tk-[0-9]*
LATEST_LINK= minc2
MAN1= dcm2mnc.1 \
@@ -71,9 +69,12 @@ MAN1= dcm2mnc.1 \
rawtominc.1 \
transformtags.1 \
upet2mnc.1 \
+ vff2mnc.1 \
voxeltoworld.1 \
xfmconcat.1 \
+ xfmflip.1 \
xfminvert.1
+
MAN3= ParseArgv.3
post-install:
Modified: head/science/minc2/distinfo
==============================================================================
--- head/science/minc2/distinfo Fri Jul 20 16:32:07 2012 (r301233)
+++ head/science/minc2/distinfo Fri Jul 20 16:33:32 2012 (r301234)
@@ -1,2 +1,2 @@
-SHA256 (minc-2.0.09.tar.gz) = b55907a5dd26c1b98b39f6cb81133336d7c794d4f7d4ad38b02561a9cc489390
-SIZE (minc-2.0.09.tar.gz) = 1418085
+SHA256 (minc-2.0.18.tar.gz) = 674cc89c43edfdb1957251c0124ea83252740c667cf3c4d9fc6183dcdb10f3e5
+SIZE (minc-2.0.18.tar.gz) = 1628038
Added: head/science/minc2/files/patch-conversion__minctoecat__machine_indep.c
==============================================================================
--- /dev/null 00:00:00 1970 (empty, because file is newly added)
+++ head/science/minc2/files/patch-conversion__minctoecat__machine_indep.c Fri Jul 20 16:33:32 2012 (r301234)
@@ -0,0 +1,11 @@
+--- conversion/minctoecat/machine_indep.c.orig 2012-07-20 17:16:13.000000000 +0200
++++ conversion/minctoecat/machine_indep.c 2012-07-20 17:17:48.000000000 +0200
+@@ -84,7 +84,7 @@
+ bufr[1] = ret >>16;
+ }
+ #else /* BIG ENDIAN : sun hp sgi*/
+-ftovaxf(orig,number)
++void ftovaxf(orig,number)
+ unsigned short number[2];
+ float orig;
+ {
Modified: head/science/minc2/pkg-descr
==============================================================================
--- head/science/minc2/pkg-descr Fri Jul 20 16:32:07 2012 (r301233)
+++ head/science/minc2/pkg-descr Fri Jul 20 16:33:32 2012 (r301234)
@@ -4,7 +4,7 @@ Neelin at the McConnell Brain Imaging Ce
Institute. Many others have contributed to the design and implementation
MINC over the years.
-WWW: http://www.bic.mni.mcgill.ca/software/minc/
+WWW: http://www.bic.mni.mcgill.ca/ServicesSoftware/MINC
Port maintainer: Jason W. Bacon
jwbacon at tds.net
Modified: head/science/minc2/pkg-message
==============================================================================
--- head/science/minc2/pkg-message Fri Jul 20 16:32:07 2012 (r301233)
+++ head/science/minc2/pkg-message Fri Jul 20 16:33:32 2012 (r301234)
@@ -4,5 +4,5 @@ port maintainer: jwbacon at tds.net
For MINC usage, please visit the MINC WEB site at
-http://www.bic.mni.mcgill.ca/software/minc/
+http://www.bic.mni.mcgill.ca/ServicesSoftware/MINC
=============================================================================
Modified: head/science/minc2/pkg-plist
==============================================================================
--- head/science/minc2/pkg-plist Fri Jul 20 16:32:07 2012 (r301233)
+++ head/science/minc2/pkg-plist Fri Jul 20 16:33:32 2012 (r301234)
@@ -33,9 +33,11 @@ bin/nii2mnc
bin/rawtominc
bin/transformtags
bin/upet2mnc
+bin/vff2mnc
bin/voxeltoworld
bin/worldtovoxel
bin/xfmconcat
+bin/xfmflip
bin/xfminvert
include/ParseArgv.h
include/minc.h
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