py27-pandas-0.13.1_1 conflict with py27-MySQLdb-1.2.3_4/ py27-MySQLdb55-1.2.3_4

[John W. O'Brien]

On April 18, 2014 8:45:46 AM EST, Irjohn Junus <i.junus at gmail.com> wrote:
>Dear All,
>
>I'm running 9.1-RELEASE and today just after freebsd-update to p11 and
>updating ports to the latest found out that pandas won't import after
>MySQLdb is imported first. Strangely, it will import no problem if
>MySQLdb
>is imported after:
>
>root at khaleesi:/usr/ports # python
>Python 2.7.6 (default, Apr  3 2014, 05:37:25)
>[GCC 4.2.1 20070831 patched [FreeBSD]] on freebsd9
>Type "help", "copyright", "credits" or "license" for more information.
>>>> import pandas as pd
>>>> import numpy as np
>>>> import MySQLdb
>>>>
>root at khaleesi:/usr/ports # python
>Python 2.7.6 (default, Apr  3 2014, 05:37:25)
>[GCC 4.2.1 20070831 patched [FreeBSD]] on freebsd9
>Type "help", "copyright", "credits" or "license" for more information.
>>>> import MySQLdb
>>>> import pandas as pd
>/lib/libgcc_s.so.1: version GCC_4.6.0 required by
>/usr/local/lib/gcc47/libgfortran.so.3 not found
>Traceback (most recent call last):
>  File "<stdin>", line 1, in <module>
>File "/usr/local/lib/python2.7/site-packages/pandas/__init__.py", line
>6,
>in <module>
>    from . import hashtable, tslib, lib
>  File "numpy.pxd", line 157, in init pandas.hashtable
>(pandas/hashtable.c:21547)
>  File "/usr/local/lib/python2.7/site-packages/numpy/__init__.py", line
>153, in <module>
>    from . import add_newdocs
>File "/usr/local/lib/python2.7/site-packages/numpy/add_newdocs.py",
>line
>13, in <module>
>    from numpy.lib import add_newdoc
>File "/usr/local/lib/python2.7/site-packages/numpy/lib/__init__.py",
>line
>18, in <module>
>    from .polynomial import *
> File "/usr/local/lib/python2.7/site-packages/numpy/lib/polynomial.py",
>line 19, in <module>
>    from numpy.linalg import eigvals, lstsq, inv
>File "/usr/local/lib/python2.7/site-packages/numpy/linalg/__init__.py",
>line 50, in <module>
>    from .linalg import *
>  File "/usr/local/lib/python2.7/site-packages/numpy/linalg/linalg.py",
>line 29, in <module>
>    from numpy.linalg import lapack_lite, _umath_linalg
>ImportError: /lib/libgcc_s.so.1: version GCC_4.6.0 required by
>/usr/local/lib/gcc47/libgfortran.so.3 not found
>>>> import numpy as np
>Traceback (most recent call last):
>  File "<stdin>", line 1, in <module>
>  File "/usr/local/lib/python2.7/site-packages/numpy/__init__.py", line
>153, in <module>
>    from . import add_newdocs
>File "/usr/local/lib/python2.7/site-packages/numpy/add_newdocs.py",
>line
>13, in <module>
>    from numpy.lib import add_newdoc
>File "/usr/local/lib/python2.7/site-packages/numpy/lib/__init__.py",
>line
>17, in <module>
>    from . import scimath as emath
>ImportError: cannot import name scimath
>>>>
>
>I'm not sure if this is the case before the massive upgrade that I did
>today to the latest FreeBSD and ports versions.
>
>I wrote earlier to Jimmy and John about similar issue I was facing with
>IPython, could this be related?
>
>Much appreciated if you could take a look at this.
>
>
>
>Regards,
>Irjohn

Hi Irjohn,

Yes, this looks related to your previous issue. Again, numpy is clearly involved. I am traveling at the moment with minimal computer capabilities, but I will be glad to look into this at in a week or so, unless somebody else has been able to solve it in the mean time.

Regards,
John