petsc port

Rivera II, Jorge jrivera at sfwmd.gov
Thu Dec 3 18:09:30 UTC 2009


FYI, the PETSC port appears to have issues. See attached log.

Cheers.

Jorge

---------------

Jorge Rivera

Section Leader, Modeling Systems Architecture

Hydrologic & Environmental systems Modeling Dept

South Florida Water Management District

 

-------------- next part --------------
[Gathering depends for math/petsc ........................................................................................................................ done]
--->  Checking for the latest package of 'math/petsc'
--->  Fetching the package(s) for 'petsc-2.3.3.p0_4,1' (math/petsc)
--->  Fetching petsc-2.3.3.p0_4,1
fetch: ftp://ftp.FreeBSD.org/pub/FreeBSD/ports/amd64/packages-7-stable/All/petsc-2.3.3.p0_4,1.tbz: File unavailable (e.g., file not found, no access)
** The command returned a non-zero exit status: 1
** Failed to fetch ftp://ftp.FreeBSD.org/pub/FreeBSD/ports/amd64/packages-7-stable/All/petsc-2.3.3.p0_4,1.tbz
fetch: ftp://ftp.FreeBSD.org/pub/FreeBSD/ports/amd64/packages-7-stable/All/petsc-2.3.3.p0_4,1.tgz: File unavailable (e.g., file not found, no access)
** The command returned a non-zero exit status: 1
** Failed to fetch ftp://ftp.FreeBSD.org/pub/FreeBSD/ports/amd64/packages-7-stable/All/petsc-2.3.3.p0_4,1.tgz
** Failed to fetch petsc-2.3.3.p0_4,1
** Listing the failed packages (-:ignored / *:skipped / !:failed)
        ! petsc-2.3.3.p0_4,1    (fetch error)
** Could not find the latest version (2.3.3.p0_4,1)
--->  Using the port instead of a package
--->  Installing 'petsc-2.3.3.p0_4,1' from a port (math/petsc)
--->  Building '/usr/ports/math/petsc'
===>  Cleaning for petsc-2.3.3.p0_4,1

Define WITH_MPI to use MPI.
Note: this is not compatible with Python bindings!
Define WITHOUT_X11 to remove X11 support.
Define WITH_ATLAS to replace Blas / Lapack support by Atlas.
Define WITHOUT_UMFPACK to remove UMFPACK support.

===>  Extracting for petsc-2.3.3.p0_4,1
=> MD5 Checksum OK for petsc-2.3.3-p0.tar.gz.
=> SHA256 Checksum OK for petsc-2.3.3-p0.tar.gz.
===>  Patching for petsc-2.3.3.p0_4,1
===>  Applying FreeBSD patches for petsc-2.3.3.p0_4,1
===>   petsc-2.3.3.p0_4,1 depends on file: /usr/local/bin/python2.6 - found
===>   petsc-2.3.3.p0_4,1 depends on executable: svn - found
===>   petsc-2.3.3.p0_4,1 depends on executable: gfortran44 - found
===>   petsc-2.3.3.p0_4,1 depends on file: /usr/local/libdata/pkgconfig/x11.pc - found
===>   petsc-2.3.3.p0_4,1 depends on shared library: umfpack.1 - found
===>   petsc-2.3.3.p0_4,1 depends on shared library: lapack.4 - found
===>  Configuring for petsc-2.3.3.p0_4,1
/usr/bin/sed -i.bak -e "s|AMD/Include|include/AMD|"      -e "s|AMD/Lib|/usr/local/lib|"       /usr/ports/math/petsc/work/petsc-2.3.3-p0/python/PETSc/packages/UMFPACK.py
/usr/bin/sed -i.bak -e "s|/bin/ksh|/usr/local/bin/ksh|"  /usr/ports/math/petsc/work/petsc-2.3.3-p0/bin/popup
/usr/bin/sed -i.bak -e "s|%%PACKAGE%%||"                         /usr/ports/math/petsc/work/petsc-2.3.3-p0/makefile /usr/ports/math/petsc/work/petsc-2.3.3-p0/config/configure.py
=================================================================================
             Configuring PETSc to compile on your system             
=================================================================================
=================================================================================
             *** Do not run configure as root, or using sudo. ***
             *** Use the --with-sudo=sudo option to have      ***
             *** installs of external packages done with sudo ***
             *** use only with --prefix= when installing in   ***
             *** system directories                           ***
=================================================================================
===>  Script "config/configure.py" failed unexpectedly.
Please report the problem to ports at FreeBSD.org [maintainer] and attach the
"/usr/ports/math/petsc/work/petsc-2.3.3-p0/configure.log" including the output
of the failure of your make command. Also, it might be a good idea to provide
an overview of all packages installed on your system (e.g. an `ls
/var/db/pkg`).
*** Error code 1

Stop in /usr/ports/math/petsc.
** Command failed [exit code 1]: /usr/bin/script -qa /tmp/portupgrade20091203-1283-dobwht-0 env DIALOG=/usr/local/bin/kdialog-ports-wrapper make
** Fix the problem and try again.
** Listing the failed packages (-:ignored / *:skipped / !:failed)
        ! math/petsc    (unknown build error)
                                                  


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