ports/169920: Update biology/mafft to latest version
Reed A. Cartwright
cartwright at asu.edu
Sat Aug 4 00:20:11 UTC 2012
The following reply was made to PR ports/169920; it has been noted by GNATS.
From: "Reed A. Cartwright" <cartwright at asu.edu>
To: Michael Scheidell <scheidell at freebsd.org>
Cc: bug-followup at freebsd.org
Subject: Re: ports/169920: Update biology/mafft to latest version
Date: Fri, 3 Aug 2012 17:18:07 -0700
--e89a8f3ba6b73ae30104c66594eb
Content-Type: text/plain; charset=ISO-8859-1
1) I've attached a new patch made between biology/mafft.orig and biology/mafft
2) I've run portlint -abmt, and it returns two warnings, one is a
false positive and the other has to do with lack of master sites.
3) I've joined freebsd-ports and have read the porter's handbook.
Let me know if you need anything else.
On Fri, Aug 3, 2012 at 2:54 AM, Michael Scheidell <scheidell at freebsd.org> wrote:
> Greetings:
>
> Thank you for your submission for biology/mafft.
>
> Your work is greatly appreciated.
>
> A couple of issues, first:
> you should read the porters handbook on the FreeBSD.org web site, and join
> the mailing list 'freebsd-ports'.
>
> You will find both of these resources invaluable as you work on this and
> other FreeBSD ports.
>
> Also, you need to product the patch using 'diff -ruN' (needs a unified diff,
> and -N is just in case)
>
> run 'portlint -abmt' after you patch the port, and test to make sure it not
> only compiles, but packages as well. (and pkg_delete or make deinstall
> erases all 'new' files)
>
> One more thing that you might find helpful. FreeBSD is now using subversion
> on its ports src tree. You should be able to find information on the
> porters handbook, and or here to help you use svn for your work.
>
> (then, you can just use 'svn diff' ).
>
> Once you create a proper patch, you can upload it using a mail client that
> can handle attachments,
> to: bug-followup at FreeBSD.org
> subject: Re: ports/169920: Update biology/mafft to latest version
>
> Thanks again for your help.
>
> (note: as far as changing maintainers, that is up to the current maintainer.
> Only they can give up maintainership under normal circumstances)
>
> --
> Michael Scheidell, CTO
>> | SECNAP Network Security Corporation
> d: +1.561.948.2259
> w: http://people.freebsd.org/~scheidell
--
Reed A. Cartwright, PhD
Assistant Professor of Genomics, Evolution, and Bioinformatics
School of Life Sciences
Center for Evolutionary Medicine and Informatics
The Biodesign Institute
Arizona State University
--e89a8f3ba6b73ae30104c66594eb
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