ports/162500: math/suitesparse: gmake[2]: *** [run] Segmentation fault: 11 (core dumped)

Oliver Hartmann ohartman at mailzedat.fu-berlin.de
Sat Nov 12 15:20:11 UTC 2011


>Number:         162500
>Category:       ports
>Synopsis:       math/suitesparse: gmake[2]: *** [run] Segmentation fault: 11 (core dumped)
>Confidential:   no
>Severity:       critical
>Priority:       medium
>Responsible:    freebsd-ports-bugs
>State:          open
>Quarter:        
>Keywords:       
>Date-Required:
>Class:          sw-bug
>Submitter-Id:   current-users
>Arrival-Date:   Sat Nov 12 15:20:10 UTC 2011
>Closed-Date:
>Last-Modified:
>Originator:     Oliver Hartmann
>Release:        FreeBSD 9.0-RC2/amd64 and FreeBSD 101.0-CURRENT/amd64
>Organization:
FU Berlin
>Environment:
>Description:
When trying to install math/suitesparse (which is needed for the USGS free software package ISIS 3.3.0), I receive on both FreeBSD 9.0-RC2 and FreeBSD 10.0/amd64 the following error. The machines are three different boxes, two different CPU architectures. Two boxes have FreeBSD 9.0-RC2/amd as built world today with either a Intel Core2 Q6600 CPU and one (notebook) with a Core i5-5XX (Clarkdale, both options -march=native and -march=core2 fail)). The third box is a Intel Core2 E8400-based based box driven by FreeBSD 10.0-CURRENT/amd64 (all system have builtwolrds by CLANG):

gmake[2]: Leaving directory `/usr/ports/math/suitesparse/work/SuiteSparse/UMFPACK/Lib'
( cd Demo   ; gmake )
gmake[2]: Entering directory `/usr/ports/math/suitesparse/work/SuiteSparse/UMFPACK/Demo'
gcc46 -O3 -fno-strict-aliasing -pipe -march=native  -Wl,-rpath=/usr/local/lib/gcc46    -fexceptions  -I../Include -I../../AMD/Include -I../../UFconfig -o umfpack_di_demo umfpack_di_demo.c ../Lib/libumfpack.a ../../AMD/Lib/libamd.a ../../CHOLMOD/Lib/libcholmod.a ../../COLAMD/Lib/libcolamd.a ../../CAMD/Lib/libcamd.a  ../../CCOLAMD/Lib/libccolamd.a -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc46 -lgoto2p -pthread  -lm
gcc46 -O3 -fno-strict-aliasing -pipe -march=native  -Wl,-rpath=/usr/local/lib/gcc46    -fexceptions  -I../Include -I../../AMD/Include -I../../UFconfig -o umfpack_zi_demo umfpack_zi_demo.c ../Lib/libumfpack.a ../../AMD/Lib/libamd.a ../../CHOLMOD/Lib/libcholmod.a ../../COLAMD/Lib/libcolamd.a ../../CAMD/Lib/libcamd.a  ../../CCOLAMD/Lib/libccolamd.a -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc46 -lgoto2p -pthread  -lm
gcc46 -O3 -fno-strict-aliasing -pipe -march=native  -Wl,-rpath=/usr/local/lib/gcc46    -fexceptions  -I../Include -I../../AMD/Include -I../../UFconfig -o umfpack_dl_demo umfpack_dl_demo.c ../Lib/libumfpack.a ../../AMD/Lib/libamd.a ../../CHOLMOD/Lib/libcholmod.a ../../COLAMD/Lib/libcolamd.a ../../CAMD/Lib/libcamd.a  ../../CCOLAMD/Lib/libccolamd.a -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc46 -lgoto2p -pthread  -lm
gcc46 -O3 -fno-strict-aliasing -pipe -march=native  -Wl,-rpath=/usr/local/lib/gcc46    -fexceptions  -I../Include -I../../AMD/Include -I../../UFconfig -o umfpack_zl_demo umfpack_zl_demo.c ../Lib/libumfpack.a ../../AMD/Lib/libamd.a ../../CHOLMOD/Lib/libcholmod.a ../../COLAMD/Lib/libcolamd.a ../../CAMD/Lib/libcamd.a  ../../CCOLAMD/Lib/libccolamd.a -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc46 -lgoto2p -pthread  -lm
gcc46 -O3 -fno-strict-aliasing -pipe -march=native  -Wl,-rpath=/usr/local/lib/gcc46    -fexceptions  -I../Include -I../../AMD/Include -I../../UFconfig -o umfpack_simple umfpack_simple.c ../Lib/libumfpack.a ../../AMD/Lib/libamd.a ../../CHOLMOD/Lib/libcholmod.a ../../COLAMD/Lib/libcolamd.a ../../CAMD/Lib/libcamd.a  ../../CCOLAMD/Lib/libccolamd.a -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc46 -lgoto2p -pthread  -lm
./umfpack_simple
gmake[2]: *** [run] Segmentation fault: 11 (core dumped)
gmake[2]: Leaving directory `/usr/ports/math/suitesparse/work/SuiteSparse/UMFPACK/Demo'
gmake[1]: *** [all] Error 2
gmake[1]: Leaving directory `/usr/ports/math/suitesparse/work/SuiteSparse/UMFPACK'
gmake: *** [default] Error 2
*** Error code 2

Stop in /usr/ports/math/suitesparse.

===>>> make failed for math/suitesparse

>How-To-Repeat:
Install math/suitesparse on the above mentioned operating systems on equivalent hardware and setups.
>Fix:


>Release-Note:
>Audit-Trail:
>Unformatted:



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