ports/163601: [maintainer] [patch] science/hdf-java

Rob Farmer rfarmer at predatorlabs.net
Sat Dec 24 23:20:10 UTC 2011 

>Number:         163601
>Category:       ports
>Synopsis:       [maintainer] [patch] science/hdf-java
>Confidential:   no
>Severity:       non-critical
>Priority:       low
>Responsible:    freebsd-ports-bugs
>State:          open
>Quarter:        
>Keywords:       
>Date-Required:
>Class:          maintainer-update
>Submitter-Id:   current-users
>Arrival-Date:   Sat Dec 24 23:20:10 UTC 2011
>Closed-Date:
>Last-Modified:
>Originator:     Rob Farmer
>Release:        10-CURRENT
>Organization:
>Environment:
FreeBSD turquoise.predatorlabs.net 10.0-CURRENT FreeBSD 10.0-CURRENT #0: Sat Dec 24 01:03:56 PST 2011     rfarmer at turquoise.predatorlabs.net:/usr/obj/usr/src/sys/TURQUOISE  amd64
>Description:
Commit after ports/163595 - I haven't tested with the old version

-Update to 2.8
-Wrap long lines
-Fix java paths so the hdfview script works
-Add jpeg support
-Build javadoc
-Prevent implicit dependencies
>How-To-Repeat:

>Fix:


Patch attached with submission follows:

Index: Makefile
===================================================================
RCS file: /home/ncvs/ports/science/hdf-java/Makefile,v
retrieving revision 1.5
diff -u -r1.5 Makefile
--- Makefile	15 Jul 2011 07:00:46 -0000	1.5
+++ Makefile	22 Dec 2011 02:37:18 -0000
@@ -6,8 +6,7 @@
 #
 
 PORTNAME=	hdf-java
-PORTVERSION=	2.7
-PORTREVISION=	1
+PORTVERSION=	2.8
 CATEGORIES=	science java
 MASTER_SITES=	http://www.hdfgroup.org/ftp/HDF5/hdf-java/src/ \
 		http://www.predatorlabs.net/dl/
@@ -16,20 +15,25 @@
 MAINTAINER=	rfarmer at predatorlabs.net
 COMMENT=	Java interface to HDF5
 
-LIB_DEPENDS=	hdf5.7:${PORTSDIR}/science/hdf5-18
+LIB_DEPENDS=	hdf5.7:${PORTSDIR}/science/hdf5-18 \
+		jpeg.11:${PORTSDIR}/graphics/jpeg
 
 USE_JAVA=	yes
-JAVA_VERSION=	1.5+
+JAVA_VERSION=	1.6+
 JAVA_BUILD=	yes
 JAVA_RUN=	yes
 
 USE_DOS2UNIX=	yes
 DOS2UNIX_REGEX=	.*/examples/.*Makefile.in
 
+USE_GMAKE=	yes
 GNU_CONFIGURE=	yes
 CONFIGURE_ARGS=	--with-jdk=${JAVA_HOME}/include,${JAVA_HOME}/jre/lib/ \
 		--with-hdf5=${LOCALBASE}/include \
-		--with-libz=/lib
+		--with-libz=/lib \
+		--with-libjpeg=${LOCALBASE} \
+		--without-hdf4 \
+		--without-h4toh5
 
 WRKSRC=		${WRKDIR}/${PORTNAME}
 
@@ -39,24 +43,37 @@
 
 .if defined(WITH_SZIP)
 CONFIGURE_ARGS+=	--with-libsz=${LOCALBASE}/lib
+.else
+CONFIGURE_ARGS+=	--without-libsz
+.endif
+
+.if !defined(NOPORTDOCS)
+ALL_TARGET=	all javadocs
 .endif
 
 post-patch:
-	${REINPLACE_CMD} -e 's|"/libhdf.$$LLEXT"|"${LOCALBASE}/lib"|' ${WRKSRC}/configure
-	${REINPLACE_CMD} -e 's|$$z_lib"/libz."$$LLEXT|"/lib/libz.so.*"|' ${WRKSRC}/configure
-	${REINPLACE_CMD} -e 's|$$sz_lib"/libsz."$$LLEXT|"${LOCALBASE}/lib/libsz.so.*"|' ${WRKSRC}/configure
-	${REINPLACE_CMD} -e 's|LLEXT="a"|LLEXT="so"|g' ${WRKSRC}/configure
-	${REINPLACE_CMD} -e 's|COPT="-shared"|COPT="-fPIC"|g' ${WRKSRC}/configure
-	${REINPLACE_CMD} -e 's|$$(JH45INSTALLDIR)/lib|${JAVAJARDIR}|' ${WRKSRC}/Makefile.in
-	${REINPLACE_CMD} -e 's|$$(LIBDIR)/@JAVATARG@|${PREFIX}/lib|g' ${WRKSRC}/Makefile.in
-	${REINPLACE_CMD} -e 's|cp -R|#|' ${WRKSRC}/Makefile.in
-	${REINPLACE_CMD} -e 's|cp ./lib/@JAVATARG@|${INSTALL_PROGRAM} ./lib/@JAVATARG@|g' ${WRKSRC}/Makefile.in
-	${REINPLACE_CMD} -e 's|cp |${INSTALL_DATA} |g' ${WRKSRC}/Makefile.in
+	@${REINPLACE_CMD} -e 's|"/libhdf.$$LLEXT"|"${LOCALBASE}/lib"|' \
+		-e 's|$$z_lib"/libz."$$LLEXT|"/lib/libz.so.*"|' \
+		-e 's|$$sz_lib"/libsz."$$LLEXT|"${LOCALBASE}/lib/libsz.so.*"|' \
+		-e 's|LLEXT="a"|LLEXT="so"|g' \
+		-e 's|COPT="-shared"|COPT="-fPIC"|g' ${WRKSRC}/configure
+	@${REINPLACE_CMD} -e 's|LIBDIR=$$(JH45INSTALLDIR)|LIBDIR=${PREFIX}|' \
+		-e 's|$$(JH45INSTALLDIR)/lib|${JAVAJARDIR}|g' \
+		-e 's|INSTALL_LIB |${INSTALL_LIB} |' \
+		-e 's|cp |${INSTALL_DATA} |g' ${WRKSRC}/Makefile.in
+	@${REINPLACE_CMD} -e\
+		's|$$HDFJAVA"/lib/freebsd:"$$HDFJAVA"/lib/ext|${PREFIX}/lib"|' \
+		-e 's|$$HDFJAVA"/lib|${JAVAJARDIR}"|g' \
+		${WRKSRC}/bin/hdfview.sh.in
 
 post-install:
 .if !defined(NOPORTDOCS)
 	${MKDIR} ${DOCSDIR}/UsersGuide
 	(cd ${WRKSRC}/docs/hdfview/ && ${COPYTREE_SHARE} "UsersGuide" ${DOCSDIR}/)
+	(cd ${WRKSRC}/docs/ && ${COPYTREE_SHARE} "javadocs" ${DOCSDIR}/)
 .endif
 
+regression-test: build
+	@cd ${WRKSRC} && ${SETENV} ${MAKE_ENV} ${GMAKE} check
+
 .include <bsd.port.mk>
Index: distinfo
===================================================================
RCS file: /home/ncvs/ports/science/hdf-java/distinfo,v
retrieving revision 1.4
diff -u -r1.4 distinfo
--- distinfo	17 Mar 2011 17:24:59 -0000	1.4
+++ distinfo	21 Dec 2011 06:49:47 -0000
@@ -1,2 +1,2 @@
-SHA256 (hdf-java-2.7-src.tar) = 091c999cf53266ba113bef45a83912b12444624cfe0253d5eb565b95e0832706
-SIZE (hdf-java-2.7-src.tar) = 13209600
+SHA256 (hdf-java-2.8-src.tar) = bc1b1eb2b9e40c2a23aff295818526ba007cdf8d43bb9a3d1cb117304b56fbb5
+SIZE (hdf-java-2.8-src.tar) = 13670400
Index: pkg-plist
===================================================================
RCS file: /home/ncvs/ports/science/hdf-java/pkg-plist,v
retrieving revision 1.2
diff -u -r1.2 pkg-plist
--- pkg-plist	17 Mar 2011 17:24:59 -0000	1.2
+++ pkg-plist	21 Dec 2011 23:14:28 -0000
@@ -63,6 +63,132 @@
 %%PORTDOCS%%%%DOCSDIR%%/UsersGuide/ug05spreadsheet.html
 %%PORTDOCS%%%%DOCSDIR%%/UsersGuide/ug06imageview.html
 %%PORTDOCS%%%%DOCSDIR%%/UsersGuide/ug07textview.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdflib/HDFArray.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdflib/HDFChunkInfo.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdflib/HDFCompInfo.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdflib/HDFConstants.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdflib/HDFDeflateCompInfo.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdflib/HDFDeprecated.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdflib/HDFException.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdflib/HDFIMCOMPCompInfo.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdflib/HDFJavaException.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdflib/HDFJPEGCompInfo.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdflib/HDFLibrary.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdflib/HDFLibraryException.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdflib/HDFNativeData.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdflib/HDFNBITChunkInfo.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdflib/HDFNBITCompInfo.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdflib/HDFNewCompInfo.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdflib/HDFNotImplementedException.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdflib/HDFOldCompInfo.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdflib/HDFOldRLECompInfo.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdflib/HDFRLECompInfo.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdflib/HDFSKPHUFFCompInfo.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdflib/HDFSZIPCompInfo.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdflib/HDFTable.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdflib/package-frame.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdflib/package-summary.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdflib/package-tree.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/callbacks/Callbacks.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/callbacks/H5D_iterate_cb.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/callbacks/H5D_iterate_t.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/callbacks/H5L_iterate_cb.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/callbacks/H5L_iterate_t.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/callbacks/H5O_iterate_cb.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/callbacks/H5O_iterate_t.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/callbacks/package-frame.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/callbacks/package-summary.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/callbacks/package-tree.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/exceptions/HDF5AtomException.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/exceptions/HDF5AttributeException.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/exceptions/HDF5BtreeException.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/exceptions/HDF5DataFiltersException.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/exceptions/HDF5DatasetInterfaceException.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/exceptions/HDF5DataspaceInterfaceException.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/exceptions/HDF5DataStorageException.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/exceptions/HDF5DatatypeInterfaceException.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/exceptions/HDF5Exception.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/exceptions/HDF5ExternalFileListException.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/exceptions/HDF5FileInterfaceException.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/exceptions/HDF5FunctionArgumentException.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/exceptions/HDF5FunctionEntryExitException.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/exceptions/HDF5HeapException.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/exceptions/HDF5InternalErrorException.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/exceptions/HDF5JavaException.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/exceptions/HDF5LibraryException.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/exceptions/HDF5LowLevelIOException.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/exceptions/HDF5MetaDataCacheException.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/exceptions/HDF5ObjectHeaderException.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/exceptions/HDF5PropertyListInterfaceException.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/exceptions/HDF5ReferenceException.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/exceptions/HDF5ResourceUnavailableException.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/exceptions/HDF5SymbolTableException.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/exceptions/package-frame.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/exceptions/package-summary.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/exceptions/package-tree.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/structs/H5_ih_info_t.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/structs/H5A_info_t.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/structs/H5AC_cache_config_t.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/structs/H5G_info_t.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/structs/H5L_info_t.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/structs/H5O_hdr_info_t.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/structs/H5O_info_t.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/structs/package-frame.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/structs/package-summary.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/structs/package-tree.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/H5.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/HDF5Constants.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/HDF5GroupInfo.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/HDFArray.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/HDFNativeData.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/package-frame.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/package-summary.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/package-tree.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/object/Attribute.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/object/CompoundDS.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/object/DataFormat.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/object/Dataset.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/object/Datatype.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/object/FileFormat.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/object/Group.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/object/HObject.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/object/Metadata.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/object/ScalarDS.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/object/h4/H4Datatype.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/object/h4/H4File.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/object/h4/H4GRImage.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/object/h4/H4Group.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/object/h4/H4SDS.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/object/h4/H4Vdata.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/object/h4/package-frame.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/object/h4/package-summary.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/object/h4/package-tree.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/object/h5/H5CompoundDS.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/object/h5/H5Datatype.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/object/h5/H5File.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/object/h5/H5Group.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/object/h5/H5Link.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/object/h5/H5ScalarDS.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/object/h5/package-frame.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/object/h5/package-summary.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/object/h5/package-tree.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/object/package-frame.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/object/package-summary.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/ncsa/hdf/object/package-tree.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/package-list
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/overview-frame.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/constant-values.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/serialized-form.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/resources/inherit.gif
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/overview-tree.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/index-all.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/deprecated-list.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/allclasses-frame.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/allclasses-noframe.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/index.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/overview-summary.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/help-doc.html
+%%PORTDOCS%%%%DOCSDIR%%/javadocs/stylesheet.css
 share/java/classes/ext/fitsobj.jar
 share/java/classes/ext/nc2obj.jar
 share/java/classes/fits.jar
@@ -70,11 +196,20 @@
 share/java/classes/jhdf5obj.jar
 share/java/classes/jhdfobj.jar
 share/java/classes/jhdfview.jar
-share/java/classes/junit.jar
 share/java/classes/netcdf.jar
- at dirrm share/java/classes/ext
+ at dirrmtry share/java/classes/ext
 %%PORTDOCS%%@dirrm %%DOCSDIR%%/UsersGuide/images
 %%PORTDOCS%%@dirrm %%DOCSDIR%%/UsersGuide
+%%PORTDOCS%%@dirrm %%DOCSDIR%%/javadocs/resources
+%%PORTDOCS%%@dirrm %%DOCSDIR%%/javadocs/ncsa/hdf/object/h5
+%%PORTDOCS%%@dirrm %%DOCSDIR%%/javadocs/ncsa/hdf/object/h4
+%%PORTDOCS%%@dirrm %%DOCSDIR%%/javadocs/ncsa/hdf/object
+%%PORTDOCS%%@dirrm %%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/structs
+%%PORTDOCS%%@dirrm %%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/exceptions
+%%PORTDOCS%%@dirrm %%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib/callbacks
+%%PORTDOCS%%@dirrm %%DOCSDIR%%/javadocs/ncsa/hdf/hdf5lib
+%%PORTDOCS%%@dirrm %%DOCSDIR%%/javadocs/ncsa/hdf/hdflib
+%%PORTDOCS%%@dirrm %%DOCSDIR%%/javadocs/ncsa/hdf
+%%PORTDOCS%%@dirrm %%DOCSDIR%%/javadocs/ncsa
+%%PORTDOCS%%@dirrm %%DOCSDIR%%/javadocs
 %%PORTDOCS%%@dirrm %%DOCSDIR%%
- at dirrm UsersGuide
- at exec mkdir -p %D/UsersGuide
Index: files/patch-Makefile.in
===================================================================
RCS file: files/patch-Makefile.in
diff -N files/patch-Makefile.in
--- /dev/null	1 Jan 1970 00:00:00 -0000
+++ files/patch-Makefile.in	21 Dec 2011 23:03:11 -0000
@@ -0,0 +1,76 @@
+--- ./Makefile.in.orig	2011-11-29 12:19:58.000000000 -0800
++++ ./Makefile.in	2011-12-21 15:03:05.000000000 -0800
+@@ -283,18 +283,8 @@
+ uninstall: uninstall-jhdfview uninstall-jhdfobj uninstall-lib uninstall-jhi uninstall-jhi5 
+ 
+ install-lib: natives
+-	-mkdir -p $(LIBDIR);
+-	-mkdir -p $(LIBDIR)/@JAVATARG@
+ 	@if test -n "$(H5INC)" ; then \
+-	cp $(CLASS_DIR)/@JAVATARG@/libjhdf5.$(JSLEXT) $(LIBDIR)/@JAVATARG@ ; fi
+-	@if test -n "$(H5INC)/../lib" ; then \
+-	cp $(H5INC)/../lib/*.settings $(LIBDIR)/@JAVATARG@ ; fi
+-	@if test -n "$(H4INC)" ; then \
+-	cp $(CLASS_DIR)/@JAVATARG@/libjhdf.$(JSLEXT) $(LIBDIR)/@JAVATARG@ ; fi
+-	@if test -n "$(H4INC)/../lib" ; then \
+-	cp $(H4INC)/../lib/*.settings $(LIBDIR)/@JAVATARG@ ; fi
+-	@if test -n "$(H45INC)" ; then \
+-	cp $(CLASS_DIR)/@JAVATARG@/libjh4toh5.$(JSLEXT) $(LIBDIR)/@JAVATARG@ ; fi
++	INSTALL_LIB $(CLASS_DIR)/@JAVATARG@/libjhdf5.$(JSLEXT) $(LIBDIR)/ ; fi
+ 	@echo "Install Natives complete"
+ 
+ install-hdflib: 
+@@ -325,7 +315,6 @@
+ 	@if test -n "$(H4INC)" ; then $(MAKE) do-install-jhdf ; fi
+ 
+ do-install-jhdf: jhdf-packages
+-	-mkdir -p $(LIBDIR);
+ 	$(JAR) cf $(JH45INSTALLDIR)/lib/jhdf.jar -C $(CLASS_DIR) $(JHICLASSES)
+ 	@echo "Install JHI complete"
+ 
+@@ -333,42 +322,30 @@
+ 	@if test -n "$(H5INC)" ; then $(MAKE) do-install-jhdf5 ; fi
+ 
+ do-install-jhdf5: jhdf5-packages
+-	-mkdir -p $(LIBDIR);
+ 	$(JAR) cf $(JH45INSTALLDIR)/lib/jhdf5.jar -C $(CLASS_DIR) $(JHI5CLASSES)
+ 	@echo "Install JHI5 complete"
+ 
+ install-jhdfobj: ncsa.hdf.object
+-	-mkdir -p $(LIBDIR);
+ 	$(JAR) cf $(JH45INSTALLDIR)/lib/jhdfobj.jar -C $(CLASS_DIR) $(HDFOBJCLASSES)
+ 	@if test -n "$(H4INC)" ; then $(MAKE) do-install-jhdf4obj ; fi
+ 	@if test -n "$(H5INC)" ; then $(MAKE) do-install-jhdf5obj ; fi
+ 	@echo "Install HDFOBJ complete"
+ 
+ do-install-jhdf4obj: ncsa.hdf.object.h4
+-	-mkdir -p $(LIBDIR);
+ 	$(JAR) cf $(JH45INSTALLDIR)/lib/jhdf4obj.jar -C $(CLASS_DIR) $(H4OBJCLASSES)
+ 	@echo "Install JHDF4 complete"
+ 
+ do-install-jhdf5obj: ncsa.hdf.object.h5
+-	-mkdir -p $(LIBDIR);
+ 	$(JAR) cf $(JH45INSTALLDIR)/lib/jhdf5obj.jar -C $(CLASS_DIR) $(H5OBJCLASSES)
+ 	@echo "Install JHDF4 complete"
+ 
+ install-jhdfview: ncsa.hdf.view
+-	-mkdir -p $(LIBDIR);
+ 	$(JAR) cf $(JH45INSTALLDIR)/lib/jhdfview.jar -C $(CLASS_DIR) $(HDFVIEWCLASSES) $(HDFVIEWICONS)
+-	-mkdir -p $(LIBDIR)/ext
++	-mkdir -p $(JH45INSTALLDIR)/lib/ext
+ 	$(JAR) cf $(JH45INSTALLDIR)/lib/ext/nc2obj.jar -C $(CLASS_DIR) $(NC2OBJCLASSES)
+ 	$(JAR) cf $(JH45INSTALLDIR)/lib/ext/fitsobj.jar -C $(CLASS_DIR) $(FITSOBJCLASSES)
+-	$(RM) -rf $(UGDIR);
+-	-mkdir -p $(UGDIR);
+-	cp -R docs/hdfview/UsersGuide/* $(UGDIR);	
+-	$(RM) -rf $(UGDIR)/.svn
+-	$(RM) -rf $(UGDIR)/images/.svn
+-	-mkdir -p $(BINDIR);
+-	cp lib/netcdf.jar $(LIBDIR)
+-	cp lib/fits.jar $(LIBDIR)
+-	cp lib/junit.jar $(LIBDIR)
++	cp lib/netcdf.jar $(JH45INSTALLDIR)/lib
++	cp lib/fits.jar $(JH45INSTALLDIR)/lib
+ 	cp bin/hdfview.sh $(BINDIR)
+ 	chmod a+x $(BINDIR)/hdfview.sh
+ 	@echo "Install HDFVIEW complete"
Index: files/patch-configure
===================================================================
RCS file: /home/ncvs/ports/science/hdf-java/files/patch-configure,v
retrieving revision 1.1
diff -u -r1.1 patch-configure
--- files/patch-configure	4 Nov 2010 13:05:36 -0000	1.1
+++ files/patch-configure	21 Dec 2011 23:18:33 -0000
@@ -1,28 +1,28 @@
---- configure.orig	2010-11-01 02:54:27.000000000 -0700
-+++ configure	2010-11-01 02:56:20.000000000 -0700
+--- ./configure.orig	2011-12-21 15:16:44.000000000 -0800
++++ ./configure	2011-12-21 15:18:28.000000000 -0800
 @@ -4424,12 +4424,6 @@
- 	if test \( ! -d "$JH45INST" \); then
- 		JH45INST_FOUND=0
- 	fi
--	if test \( ! -w "$JH45INST" \); then
--		{ { echo "$as_me:$LINENO: error:  $JAVINST : not writable " >&5
+   if test \( ! -d "$JH45INST" \); then
+     JH45INST_FOUND=0
+   fi
+-  if test \( ! -w "$JH45INST" \); then
+-    { { echo "$as_me:$LINENO: error:  $JAVINST : not writable " >&5
 -echo "$as_me: error:  $JAVINST : not writable " >&2;}
 -   { (exit 1); exit 1; }; }
--		JH45INST_FOUND=0
--	fi
+-    JH45INST_FOUND=0
+-  fi
  fi
  until test $JH45INST_FOUND -eq 1; do
- 	echo "Please type the directory in which to install the JH45"
+   echo "Please type the directory in which to install the JH45"
 @@ -4438,12 +4432,6 @@
- 	if test \( ! -d "$JH45INST" \); then
- 		JH45INST_FOUND=0
- 	fi
--	if test \( ! -w "$JH45INST" \); then
--		{ { echo "$as_me:$LINENO: error:  $JAVINST : not writable " >&5
+   if test \( ! -d "$JH45INST" \); then
+     JH45INST_FOUND=0
+   fi
+-  if test \( ! -w "$JH45INST" \); then
+-    { { echo "$as_me:$LINENO: error:  $JAVINST : not writable " >&5
 -echo "$as_me: error:  $JAVINST : not writable " >&2;}
 -   { (exit 1); exit 1; }; }
--		JH45INST_FOUND=0
--	fi
+-    JH45INST_FOUND=0
+-  fi
  done
  
  ac_cv_lib_JH45INST=$JH45INST


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