ports/163595: [patch] science/hdf5-18 Update to 1.8.8

[Rob Farmer]

>Number:         163595
>Category:       ports
>Synopsis:       [patch] science/hdf5-18 Update to 1.8.8
>Confidential:   no
>Severity:       non-critical
>Priority:       low
>Responsible:    freebsd-ports-bugs
>State:          open
>Quarter:        
>Keywords:       
>Date-Required:
>Class:          update
>Submitter-Id:   current-users
>Arrival-Date:   Sat Dec 24 23:00:32 UTC 2011
>Closed-Date:
>Last-Modified:
>Originator:     Rob Farmer
>Release:        10-CURRENT
>Organization:
>Environment:
FreeBSD turquoise.predatorlabs.net 10.0-CURRENT FreeBSD 10.0-CURRENT #0: Sat Dec 24 01:03:56 PST 2011     rfarmer at turquoise.predatorlabs.net:/usr/obj/usr/src/sys/TURQUOISE  amd64
>Description:
-Update to 1.8.8
-Fix bad shell scripts; all regression tests pass now
>How-To-Repeat:

>Fix:


Patch attached with submission follows:

Index: Makefile
===================================================================
RCS file: /home/ncvs/ports/science/hdf5-18/Makefile,v
retrieving revision 1.63
diff -u -r1.63 Makefile
--- Makefile	9 Nov 2011 15:25:42 -0000	1.63
+++ Makefile	22 Dec 2011 02:37:21 -0000
@@ -6,7 +6,7 @@
 #
 
 PORTNAME=	hdf5
-PORTVERSION=	1.8.7
+PORTVERSION=	1.8.8
 CATEGORIES=	science archivers graphics
 MASTER_SITES=	ftp://ftp.hdfgroup.org/HDF5/prev-releases/hdf5-${PORTVERSION}/src/
 #DISTNAME=	${PORTNAME}-${PORTVERSION}-patch1
@@ -62,6 +62,7 @@
 		-e 's|/share/hdf5_examples|/${EXAMPLESDIR_REL}|' \
 		-e 's|(INSTALL)|(INSTALL_DATA)|' \
 			`${FIND} ${WRKSRC} -regex '.*/examples/Makefile.in'`
+	@${REINPLACE_CMD} -e 's|\[ -a|\[ -f|g' `${FIND} ${WRKSRC} -name \*.sh\*`
 .if defined(NOPORTEXAMPLES)
 	@${REINPLACE_CMD} -e '/^install:/ s|install-examples||' ${WRKSRC}/Makefile.in
 .endif
Index: distinfo
===================================================================
RCS file: /home/ncvs/ports/science/hdf5-18/distinfo,v
retrieving revision 1.25
diff -u -r1.25 distinfo
--- distinfo	15 Jul 2011 06:58:28 -0000	1.25
+++ distinfo	21 Dec 2011 05:18:39 -0000
@@ -1,2 +1,2 @@
-SHA256 (hdf5-1.8.7.tar.bz2) = 771761c9bec30b9a4137fa59ef88fdafdb0f4f35d1db0fd655f2591d19570fec
-SIZE (hdf5-1.8.7.tar.bz2) = 5710170
+SHA256 (hdf5-1.8.8.tar.bz2) = b0ebb0b5478c6c0427631d4ad08f96e39f1b09fde615aa98d2a1b8fb7f6dced3
+SIZE (hdf5-1.8.8.tar.bz2) = 5827394
Index: pkg-plist
===================================================================
RCS file: /home/ncvs/ports/science/hdf5-18/pkg-plist,v
retrieving revision 1.29
diff -u -r1.29 pkg-plist
--- pkg-plist	15 Jul 2011 06:58:28 -0000	1.29
+++ pkg-plist	21 Dec 2011 07:20:57 -0000
@@ -90,8 +90,12 @@
 include/H5version.h
 %%FORTRAN%%include/h5_dble_interface.mod
 %%FORTRAN%%include/h5a.mod
+%%FORTRAN%%include/h5a_provisional.mod
 %%FORTRAN%%include/h5d.mod
+%%FORTRAN%%include/h5d_provisional.mod
+%%FORTRAN%%include/h5ds.mod
 %%FORTRAN%%include/h5e.mod
+%%FORTRAN%%include/h5e_provisional.mod
 %%FORTRAN%%include/h5f.mod
 %%FORTRAN%%include/h5fortran_types.mod
 %%FORTRAN%%include/h5g.mod
@@ -99,13 +103,19 @@
 %%FORTRAN%%include/h5i.mod
 %%FORTRAN%%include/h5im.mod
 %%FORTRAN%%include/h5l.mod
+%%FORTRAN%%include/h5l_provisional.mod
 %%FORTRAN%%include/h5lib.mod
+%%FORTRAN%%include/h5lib_provisional.mod
 %%FORTRAN%%include/h5lt.mod
 %%FORTRAN%%include/h5o.mod
+%%FORTRAN%%include/h5o_provisional.mod
 %%FORTRAN%%include/h5p.mod
+%%FORTRAN%%include/h5p_provisional.mod
 %%FORTRAN%%include/h5r.mod
+%%FORTRAN%%include/h5r_provisional.mod
 %%FORTRAN%%include/h5s.mod
 %%FORTRAN%%include/h5t.mod
+%%FORTRAN%%include/h5t_provisional.mod
 %%FORTRAN%%include/h5tb.mod
 %%FORTRAN%%include/h5z.mod
 include/hdf5.h
@@ -188,6 +198,7 @@
 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/hl/c/ptExampleFL.c
 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/hl/c/ptExampleVL.c
 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/hl/c/run-hlc-ex.sh
+%%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hl/fortran/ex_ds1.f90
 %%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hl/fortran/exlite.f90
 %%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hl/fortran/run-hlfortran-ex.sh
 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/hl/run-hl-ex.sh
Index: files/patch-src-H5FDdirect.c
===================================================================
RCS file: /home/ncvs/ports/science/hdf5-18/files/patch-src-H5FDdirect.c,v
retrieving revision 1.1
diff -u -r1.1 patch-src-H5FDdirect.c
--- files/patch-src-H5FDdirect.c	24 Nov 2008 05:29:55 -0000	1.1
+++ files/patch-src-H5FDdirect.c	22 Dec 2011 00:51:02 -0000
@@ -1,11 +1,11 @@
---- src/H5FDdirect.c.orig	2008-09-24 22:02:07.000000000 +0800
-+++ src/H5FDdirect.c	2008-09-24 22:02:38.000000000 +0800
+--- ./src/H5FDdirect.c.orig	2011-11-07 14:11:30.000000000 -0800
++++ ./src/H5FDdirect.c	2011-12-21 16:50:03.000000000 -0800
 @@ -29,6 +29,8 @@
   * this file. */
  /* #define _XOPEN_SOURCE 600 */
  
-+#define O_DIRECT        0x00010000
++#define O_DIRECT	0x00010000
 +
- #include "H5private.h"		/* Generic Functions			*/
- #include "H5Eprivate.h"		/* Error handling		  	*/
- #include "H5Fprivate.h"		/* File access				*/
+ #include "H5private.h"    /* Generic Functions      */
+ #include "H5Eprivate.h"    /* Error handling        */
+ #include "H5Fprivate.h"    /* File access        */


>Release-Note:
>Audit-Trail:
>Unformatted: