ports/151519: New port: math/libtsnnls Fast Sparse Nonnegative Least Squares Solver

[Tz-Huan Huang]

>Number:         151519
>Category:       ports
>Synopsis:       New port: math/libtsnnls Fast Sparse Nonnegative Least Squares Solver
>Confidential:   no
>Severity:       non-critical
>Priority:       low
>Responsible:    freebsd-ports-bugs
>State:          open
>Quarter:        
>Keywords:       
>Date-Required:
>Class:          change-request
>Submitter-Id:   current-users
>Arrival-Date:   Sun Oct 17 19:00:16 UTC 2010
>Closed-Date:
>Last-Modified:
>Originator:     Tz-Huan Huang
>Release:        9.0-CURRENT
>Organization:
NTU CSIE
>Environment:
FreeBSD tzhuan.csie.org 9.0-CURRENT FreeBSD 9.0-CURRENT #5 r213506M: Thu Oct  7 14:25:54 CST 2010     root at tzhuan.csie.org:/usr/obj/usr/src/sys/TZHUAN  amd64
>Description:
libtsnnls is a fast solver for least-squares problems in the
form Ax = b under the constraint that all entries in the
solution vector x are non-negative.

>How-To-Repeat:

>Fix:


Patch attached with submission follows:

# This is a shell archive.  Save it in a file, remove anything before
# this line, and then unpack it by entering "sh file".  Note, it may
# create directories; files and directories will be owned by you and
# have default permissions.
#
# This archive contains:
#
#	libtsnnls
#	libtsnnls/distinfo
#	libtsnnls/Makefile
#	libtsnnls/pkg-descr
#
echo c - libtsnnls
mkdir -p libtsnnls > /dev/null 2>&1
echo x - libtsnnls/distinfo
sed 's/^X//' >libtsnnls/distinfo << '9875a3552aa5569bb40a9b5f9bdfdcb4'
XMD5 (libtsnnls-2.3.3.tar.gz) = 5edf293fdf084818482847f2a52c6338
XSHA256 (libtsnnls-2.3.3.tar.gz) = edaa1f9356c5f95df2800cdcfd08dc713a63ef1f8d56681baf482160f38e5b9a
XSIZE (libtsnnls-2.3.3.tar.gz) = 1750216
9875a3552aa5569bb40a9b5f9bdfdcb4
echo x - libtsnnls/Makefile
sed 's/^X//' >libtsnnls/Makefile << '1f92c71dfa1a455a7ed02a5e0277477d'
X# New ports collection makefile for:   libtsnnls
X# Date created:        18 October 2010
X# Whom:                Tz-Huan Huang <tzhuan at gmail.com>
X#
X# $FreeBSD$
X#
X
XPORTNAME=libtsnnls
XPORTVERSION=2.3.3
XCATEGORIES=math
XMASTER_SITES=http://www.jasoncantarella.com/downloads/
X
XMAINTAINER=tzhuan at gmail.com
XCOMMENT=Fast Sparse Nonnegative Least Squares Solver
X
XGNU_CONFIGURE=yes
XUSE_FORTRAN=yes
XUSE_LDCONFIG=yes
X
XOPTIONS=USE_GOTOBLAS "Use gotoblas (conflict with USE_ATLAS)" off \
X	USE_ATLAS "Use atlas (conflict with USE_GOTOBLAS)" off
X# DMALLOC "Use dmalloc" off
X
X.include <bsd.port.options.mk>
X
XUSE_BLAS?=reference
X.ifdef(WITH_USE_GOTOBLAS)
XUSE_BLAS=gotoblas
X.endif
X.ifdef(WITH_USE_ATLAS)
XUSE_BLAS=atlas
X.endif
X
X# FIXME compiling error when using dmalloc
X#.ifdef(WITH_DMALLOC)
X#CONFIGURE_ARGS+=--with-dmalloc
X#LIB_DEPENDS+=dmalloc.1:${PORTSDIR}/devel/dmalloc
X#.endif
X
X.if ${USE_BLAS} == reference
XLIB_DEPENDS+=blas.2:${PORTSDIR}/math/blas
XLIB_DEPENDS+=lapack.4:${PORTSDIR}/math/lapack
XBLAS=-lblas
XLAPACK=-llapack
X.elif ${USE_BLAS} == gotoblas
XLIB_DEPENDS+=goto2:${PORTSDIR}/math/gotoblas
XBLAS=-lgoto2p
XLAPACK=-lgoto2p
X.elif ${USE_BLAS} == atlas
XLIB_DEPENDS+=atlas:${PORTSDIR}/math/atlas
XBLAS=-lptf77blas -lptcblas -latlas_r
XLAPACK=-lalapack_r
X.endif
X
XCONFIGURE_ENV+=CFLAGS="${CFLAGS} -I${LOCALBASE}/include" \
X	LDFLAGS="${LDFLAGS} -L${LOCALBASE}/lib" \
X	CC="${CC}" CXX="${CXX}"
X
XCONFIGURE_ARGS=--with-blas="${BLAS}" --with-lapack="${LAPACK}"
X
XPLIST_FILES=include/libtsnnls/tsnnls.h include/libtsnnls/lsqr.h \
X	include/libtsnnls/taucs_basic/colamd.h \
X	include/libtsnnls/taucs_basic/f2c.h \
X	include/libtsnnls/taucs_basic/taucs.h \
X	include/libtsnnls/taucs_basic/taucs_config_build.h \
X	include/libtsnnls/taucs_basic/taucs_config_tests.h \
X	include/libtsnnls/taucs_basic/taucs_private.h \
X	lib/libtsnnls.a lib/libtsnnls.la \
X	lib/libtsnnls.so lib/libtsnnls.so.0
XPLIST_DIRS=include/libtsnnls/taucs_basic include/libtsnnls
X
X.include <bsd.port.mk>
1f92c71dfa1a455a7ed02a5e0277477d
echo x - libtsnnls/pkg-descr
sed 's/^X//' >libtsnnls/pkg-descr << '49e633909db2718a6459be257e1a81a6'
Xlibtsnnls is a fast solver for least-squares problems in the
Xform Ax = b under the constraint that all entries in the
Xsolution vector x are non-negative.
X
XWWW: http://www.jasoncantarella.com/webpage/index.php?title=Tsnnls
49e633909db2718a6459be257e1a81a6
exit



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