ports/135941: [PATCH]math/libRmath: update to 2.9.0 and fix build with non-default PREFIX, LOCALBASE

[bf]

>Number:         135941
>Category:       ports
>Synopsis:       [PATCH]math/libRmath: update to 2.9.0 and fix build with non-default PREFIX,LOCALBASE
>Confidential:   no
>Severity:       non-critical
>Priority:       low
>Responsible:    freebsd-ports-bugs
>State:          open
>Quarter:        
>Keywords:       
>Date-Required:
>Class:          maintainer-update
>Submitter-Id:   current-users
>Arrival-Date:   Tue Jun 23 00:10:01 UTC 2009
>Closed-Date:
>Last-Modified:
>Originator:     bf
>Release:        8-CURRENT amd64
>Organization:
-
>Environment:
>Description:
Looked into removing USE_FORTRAN as well, but it seems to be too much trouble for too little gain.  The only port currently using this one requires Fortran to build, anyway.

b.
>How-To-Repeat:

>Fix:


Patch attached with submission follows:

diff -ruN libRmath.orig/Makefile libRmath/Makefile
--- libRmath.orig/Makefile	2009-06-22 19:55:29.000000000 -0400
+++ libRmath/Makefile	2009-06-22 19:54:31.000000000 -0400
@@ -7,7 +7,7 @@
 #
 
 PORTNAME=	libRmath
-PORTVERSION=	2.8.1
+PORTVERSION=	2.9.0
 CATEGORIES=	math
 MASTER_SITES=	http://cran.r-project.org/src/base/R-2/ \
 		ftp://cran.r-project.org/pub/R/src/base/R-2/ \
@@ -32,22 +32,34 @@
 MAINTAINER=	bf1783 at gmail.com
 COMMENT=	The standalone math library from R
 
-USE_PERL5=	yes
-USE_FORTRAN=	yes
-GNU_CONFIGURE=	yes
-USE_LDCONFIG=	yes
-CONFIGURE_ARGS+=--with-readline=no --with-x=no
+USE_PERL5_BUILD=	yes
+USE_FORTRAN=		yes
+GNU_CONFIGURE=		yes
+USE_LDCONFIG=		yes
+CONFIGURE_ARGS+=--with-readline=no --with-x=no --disable-mbcs --disable-nls --with-tcltk=no --with-cairo=no \
+		--with-libpng=no --with-jpeglib=no --with-iconv=no --with-ICU=no --without-libintl-prefix
+BUILD_WRKSRC=		${WRKSRC}/src/nmath/standalone
 
 PLIST_FILES=	include/Rmath.h lib/libRmath.a lib/libRmath.so lib/libRmath.so.0
 
-do-build:
-	(cd ${WRKSRC}/src/nmath/standalone; ${MAKE})
+post-patch:
+	@${REINPLACE_CMD} -e 's|(libdir)/pkgconfig|(prefix)/libdata/pkgconfig|g' \
+		${WRKSRC}/src/nmath/standalone/Makefile.in
+	@${REINPLACE_CMD} -e "s|-lpthread|${PTHREAD_LIBS}|g" \
+		${WRKSRC}/configure
+	@${REINPLACE_CMD} -e "s|/usr/local|${LOCALBASE}|g" \
+		${WRKSRC}/configure \
+		${WRKSRC}/config.site
 
 do-install:
 	${INSTALL_DATA} ${WRKSRC}/src/include/Rmath.h ${PREFIX}/include
-	${INSTALL_DATA} ${WRKSRC}/src/nmath/standalone/libRmath.a ${PREFIX}/lib
-	${INSTALL_DATA} ${WRKSRC}/src/nmath/standalone/libRmath.so \
+	${INSTALL_DATA} ${BUILD_WRKSRC}/libRmath.a ${PREFIX}/lib
+	${INSTALL_DATA} ${BUILD_WRKSRC}/libRmath.so \
 		${PREFIX}/lib/libRmath.so.0
 	(cd ${PREFIX}/lib; ${LN} -sf libRmath.so.0 libRmath.so)
 
+test: install
+	@(cd ${BUILD_WRKSRC}; ${SETENV} ${MAKE_ENV} ${MAKE} ${_MAKE_JOBS} \
+	${MAKE_ARGS} test && ${BUILD_WRKSRC}/test)
+
 .include <bsd.port.mk>
diff -ruN libRmath.orig/distinfo libRmath/distinfo
--- libRmath.orig/distinfo	2009-06-22 19:55:29.000000000 -0400
+++ libRmath/distinfo	2009-06-22 13:42:24.000000000 -0400
@@ -1,3 +1,3 @@
-MD5 (R-2.8.1.tar.gz) = acd40621b8942a2464daa2f9cef3273d
-SHA256 (R-2.8.1.tar.gz) = ab488af73ce7a4f2057afcf0e725be96c9ae37f8721143004397b91928ecfa60
-SIZE (R-2.8.1.tar.gz) = 16585380
+MD5 (R-2.9.0.tar.gz) = a5b79a2bc1372136cda4674b5f46d146
+SHA256 (R-2.9.0.tar.gz) = f2de4b710feabf0395ee3503befc69332b78ed6b159e959e93bc086a1a8ad818
+SIZE (R-2.9.0.tar.gz) = 18423754
diff -ruN libRmath.orig/files/patch-src__nmath__standalone__test.c libRmath/files/patch-src__nmath__standalone__test.c
--- libRmath.orig/files/patch-src__nmath__standalone__test.c	1969-12-31 19:00:00.000000000 -0500
+++ libRmath/files/patch-src__nmath__standalone__test.c	2009-06-22 18:13:49.000000000 -0400
@@ -0,0 +1,11 @@
+--- src/nmath/standalone/test.c.orig	2009-06-22 18:12:00.000000000 -0400
++++ src/nmath/standalone/test.c	2009-06-22 18:12:34.000000000 -0400
+@@ -38,7 +38,7 @@
+     qnorm(0.7, 0.0, 1.0, 0, 0);
+     printf("*** loaded '%s'\n", argv[0]);
+     set_seed(123, 456);
+-    N01_kind = AHRENS_DIETER;
++    N01type N01_kind = AHRENS_DIETER;
+     printf("one normal %f\n", norm_rand());
+     set_seed(123, 456);
+     N01_kind = BOX_MULLER;


>Release-Note:
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