ports/142051: [PATCH]math/jags: update to 1.0.4

[bf]

>Number:         142051
>Category:       ports
>Synopsis:       [PATCH]math/jags: update to 1.0.4
>Confidential:   no
>Severity:       non-critical
>Priority:       low
>Responsible:    freebsd-ports-bugs
>State:          open
>Quarter:        
>Keywords:       
>Date-Required:
>Class:          maintainer-update
>Submitter-Id:   current-users
>Arrival-Date:   Sat Dec 26 21:50:02 UTC 2009
>Closed-Date:
>Last-Modified:
>Originator:     bf
>Release:        9-CURRENT amd64
>Organization:
-
>Environment:
>Description:

>How-To-Repeat:

>Fix:


Patch attached with submission follows:

diff -ruN jags.orig/Makefile jags/Makefile
--- jags.orig/Makefile	2009-12-26 13:28:55.000000000 -0500
+++ jags/Makefile	2009-12-26 14:54:47.000000000 -0500
@@ -7,8 +7,7 @@
 #
 
 PORTNAME=	jags
-PORTVERSION=	1.0.3
-PORTREVISION=	4
+PORTVERSION=	1.0.4
 CATEGORIES=	math
 MASTER_SITES=	http://www-fis.iarc.fr/~martyn/software/jags/
 DISTNAME=	${PORTNAME:U}-${PORTVERSION}
diff -ruN jags.orig/distinfo jags/distinfo
--- jags.orig/distinfo	2009-12-26 13:28:55.000000000 -0500
+++ jags/distinfo	2009-12-26 14:57:14.000000000 -0500
@@ -1,6 +1,6 @@
-MD5 (jags/JAGS-1.0.3.tar.gz) = fa94031290e23d47e26affc571f76e38
-SHA256 (jags/JAGS-1.0.3.tar.gz) = 066e01617adb483d71d4bdefedba432babb7430379952910260f4f264fb0ef2e
-SIZE (jags/JAGS-1.0.3.tar.gz) = 1204624
+MD5 (jags/JAGS-1.0.4.tar.gz) = a44dc20d548c5fd1a80504eb29f5397d
+SHA256 (jags/JAGS-1.0.4.tar.gz) = 14665d034a36120ad373bc85702cca443da8e540533509486bdef432db0b5cca
+SIZE (jags/JAGS-1.0.4.tar.gz) = 1074964
 MD5 (jags/classic-bugs.tar.gz) = 34291e2f6d3921b1b1eb0ac1db3fbf90
 SHA256 (jags/classic-bugs.tar.gz) = e3766060e0fcda709bf9326db79b14a6312f569417b7d59015bd37f0ebc1fe2f
 SIZE (jags/classic-bugs.tar.gz) = 81668
diff -ruN jags.orig/files/patch-src__modules__bugs__matrix__matrix.cc jags/files/patch-src__modules__bugs__matrix__matrix.cc
--- jags.orig/files/patch-src__modules__bugs__matrix__matrix.cc	1969-12-31 19:00:00.000000000 -0500
+++ jags/files/patch-src__modules__bugs__matrix__matrix.cc	2009-12-26 15:49:47.000000000 -0500
@@ -0,0 +1,10 @@
+--- src/modules/bugs/matrix/matrix.cc.orig	2009-12-26 15:49:36.000000000 -0500
++++ src/modules/bugs/matrix/matrix.cc	2009-12-26 15:48:07.000000000 -0500
+@@ -41,6 +41,7 @@
+   }
+ 
+   if (w[0] <= 0) {
++    delete [] w;
+     throw runtime_error("Non positive definite matrix in call to logdet");
+   }
+ 
diff -ruN jags.orig/files/patch-src__modules__msm__matrix__matexp.cc jags/files/patch-src__modules__msm__matrix__matexp.cc
--- jags.orig/files/patch-src__modules__msm__matrix__matexp.cc	1969-12-31 19:00:00.000000000 -0500
+++ jags/files/patch-src__modules__msm__matrix__matexp.cc	2009-12-26 15:38:01.000000000 -0500
@@ -0,0 +1,11 @@
+--- src/modules/msm/matrix/matexp.cc.orig	2009-12-26 15:36:17.000000000 -0500
++++ src/modules/msm/matrix/matexp.cc	2009-12-26 15:36:54.000000000 -0500
+@@ -73,6 +73,8 @@
+     int info = 0;
+     F77_DGESV (&n, &n, Acopy, &n, ipiv, X, &n, &info);
+     if (info != 0) {
++	delete [] Acopy;
++	delete [] ipiv;
+ 	throw runtime_error("Unable to solve linear equations");
+     }
+   


>Release-Note:
>Audit-Trail:
>Unformatted: