ports/141284: [MAINTAINER] science/gromacs: update to 4.0.7
Florian Smeets
flo at kasimir.com
Tue Dec 8 15:50:06 UTC 2009
>Number: 141284
>Category: ports
>Synopsis: [MAINTAINER] science/gromacs: update to 4.0.7
>Confidential: no
>Severity: non-critical
>Priority: low
>Responsible: freebsd-ports-bugs
>State: open
>Quarter:
>Keywords:
>Date-Required:
>Class: maintainer-update
>Submitter-Id: current-users
>Arrival-Date: Tue Dec 08 15:50:05 UTC 2009
>Closed-Date:
>Last-Modified:
>Originator: Florian Smeets
>Release: FreeBSD 7.2-STABLE amd64
>Organization:
>Environment:
System: FreeBSD mail.solomo.de 7.2-STABLE FreeBSD 7.2-STABLE #10: Fri Oct 16 15:21:55 CEST 2009
>Description:
- Update to 4.0.7
Removed file(s):
- files/patch-include__gmx_cyclecounter.h
Generated with FreeBSD Port Tools 0.99
>How-To-Repeat:
>Fix:
--- gromacs-4.0.7.patch begins here ---
diff -ruN --exclude=CVS /usr/ports/science/gromacs.orig/Makefile /usr/ports/science/gromacs/Makefile
--- /usr/ports/science/gromacs.orig/Makefile 2009-12-08 16:04:24.000000000 +0100
+++ /usr/ports/science/gromacs/Makefile 2009-12-08 16:20:57.000000000 +0100
@@ -6,8 +6,7 @@
#
PORTNAME= gromacs
-PORTVERSION= 4.0.5
-PORTREVISION= 1
+PORTVERSION= 4.0.7
CATEGORIES= science
MASTER_SITES= ftp://ftp.gromacs.org/pub/gromacs/
diff -ruN --exclude=CVS /usr/ports/science/gromacs.orig/distinfo /usr/ports/science/gromacs/distinfo
--- /usr/ports/science/gromacs.orig/distinfo 2009-12-08 16:04:24.000000000 +0100
+++ /usr/ports/science/gromacs/distinfo 2009-12-08 16:21:07.000000000 +0100
@@ -1,3 +1,3 @@
-MD5 (gromacs-4.0.5.tar.gz) = 2db2261852a4d3a97547979f379dee94
-SHA256 (gromacs-4.0.5.tar.gz) = 436b7a2a1ba3637eb07e30d676d78962008373a28fd17a3d889fa5816ca30339
-SIZE (gromacs-4.0.5.tar.gz) = 8465397
+MD5 (gromacs-4.0.7.tar.gz) = 51369bd553e6bba4085a58bcf23d337d
+SHA256 (gromacs-4.0.7.tar.gz) = 048f8ece2829f01d99f7e04e1d6e8f88d3a32273192274f2e9fcf71f41f212c1
+SIZE (gromacs-4.0.7.tar.gz) = 8404518
diff -ruN --exclude=CVS /usr/ports/science/gromacs.orig/files/patch-include__gmx_cyclecounter.h /usr/ports/science/gromacs/files/patch-include__gmx_cyclecounter.h
--- /usr/ports/science/gromacs.orig/files/patch-include__gmx_cyclecounter.h 2009-12-08 16:04:24.000000000 +0100
+++ /usr/ports/science/gromacs/files/patch-include__gmx_cyclecounter.h 1970-01-01 01:00:00.000000000 +0100
@@ -1,11 +0,0 @@
---- ./include/gmx_cyclecounter.h.orig 2009-03-31 13:25:55.036329291 +0200
-+++ ./include/gmx_cyclecounter.h 2009-03-31 13:26:11.504803886 +0200
-@@ -408,7 +408,7 @@
- static __inline__ gmx_cycles_t gmx_cycles_read(void)
- {
- /* gcc inline assembly on sparc v9 */
-- ticks ret;
-+ gmx_cycles_t ret;
- __asm__("rd %%tick, %0" : "=r" (ret));
- return ret;
- }
diff -ruN --exclude=CVS /usr/ports/science/gromacs.orig/pkg-plist /usr/ports/science/gromacs/pkg-plist
--- /usr/ports/science/gromacs.orig/pkg-plist 2009-12-08 16:04:24.000000000 +0100
+++ /usr/ports/science/gromacs/pkg-plist 2009-12-08 16:35:01.000000000 +0100
@@ -490,15 +490,6 @@
%%DATADIR%%/top/ffG53a6bon.itp
%%DATADIR%%/top/ffG53a6nb.itp
%%DATADIR%%/top/ff_dum.itp
-%%DATADIR%%/top/ffcharmm27.atp
-%%DATADIR%%/top/ffcharmm27bon.itp
-%%DATADIR%%/top/ffcharmm27-c.tdb
-%%DATADIR%%/top/ffcharmm27.ddb
-%%DATADIR%%/top/ffcharmm27.hdb
-%%DATADIR%%/top/ffcharmm27.itp
-%%DATADIR%%/top/ffcharmm27nb.itp
-%%DATADIR%%/top/ffcharmm27-n.tdb
-%%DATADIR%%/top/ffcharmm27.rtp
%%DATADIR%%/top/ffencads-c.tdb
%%DATADIR%%/top/ffencads-n.tdb
%%DATADIR%%/top/ffencads.atp
--- gromacs-4.0.7.patch ends here ---
>Release-Note:
>Audit-Trail:
>Unformatted:
More information about the freebsd-ports-bugs
mailing list