ports/138263: [NEW PORT]biology/p5-Bio-SCF:Read and Update SCF Chromatographic Sequence Files

[Wen Heping]

>Number:         138263
>Category:       ports
>Synopsis:       [NEW PORT]biology/p5-Bio-SCF:Read and Update SCF Chromatographic Sequence Files
>Confidential:   no
>Severity:       non-critical
>Priority:       low
>Responsible:    freebsd-ports-bugs
>State:          open
>Quarter:        
>Keywords:       
>Date-Required:
>Class:          change-request
>Submitter-Id:   current-users
>Arrival-Date:   Fri Aug 28 07:42:39 UTC 2009
>Closed-Date:
>Last-Modified:
>Originator:     Wen Heping
>Release:        FreeBSD 8.0-Current
>Organization:
ChangAn Middle School
>Environment:
FreeBSD fb8.wenjing.com 8.0-CURRENT FreeBSD 8.0-CURRENT #0: Sun Mar 22 22:12:06 CST 2009     root at fb8.wenjing.com:/usr/obj/usr/src/sys/GENERIC  i386
>Description:
Bio::SCF module allows you to read and update (in a restricted
way) SCF chromatographic sequence files. It is an interface to
Roger Staden's io-lib. See the installation directions for further
instructions.

WWW:    http://search.cpan.org/dist/Bio-SCF/

(It require biology/iolib)
>How-To-Repeat:

>Fix:


Patch attached with submission follows:

# This is a shell archive.  Save it in a file, remove anything before
# this line, and then unpack it by entering "sh file".  Note, it may
# create directories; files and directories will be owned by you and
# have default permissions.
#
# This archive contains:
#
#	p5-Bio-SCF
#	p5-Bio-SCF/distinfo
#	p5-Bio-SCF/pkg-plist
#	p5-Bio-SCF/pkg-descr
#	p5-Bio-SCF/Makefile
#
echo c - p5-Bio-SCF
mkdir -p p5-Bio-SCF > /dev/null 2>&1
echo x - p5-Bio-SCF/distinfo
sed 's/^X//' >p5-Bio-SCF/distinfo << 'dc922c414c384823a5380cedc2afa468'
XMD5 (Bio-SCF-1.01.tar.gz) = bafc849e820c1c7deb7f076f9a72d274
XSHA256 (Bio-SCF-1.01.tar.gz) = e4c5c85a329ab6beae4f1be706a8ff965dc7d31480a0734024ba69d8ef1018e0
XSIZE (Bio-SCF-1.01.tar.gz) = 96377
dc922c414c384823a5380cedc2afa468
echo x - p5-Bio-SCF/pkg-plist
sed 's/^X//' >p5-Bio-SCF/pkg-plist << '22222757cdd362426c6fe51e9ea722af'
X%%SITE_PERL%%/%%PERL_ARCH%%/Bio/SCF/Arrays.pm
X%%SITE_PERL%%/%%PERL_ARCH%%/Bio/SCF.pm
X%%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio/SCF/SCF.so
X%%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio/SCF/SCF.bs
X%%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio/SCF/.packlist
X at dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio/SCF
X at dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio
X at dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/Bio/SCF
X at dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/Bio
22222757cdd362426c6fe51e9ea722af
echo x - p5-Bio-SCF/pkg-descr
sed 's/^X//' >p5-Bio-SCF/pkg-descr << 'c4447f403b3616af206aa88393fc6e56'
XBio::SCF module allows you to read and update (in a restricted
Xway) SCF chromatographic sequence files. It is an interface to
XRoger Staden's io-lib. See the installation directions for further
Xinstructions.
X
XWWW:	http://search.cpan.org/dist/Bio-SCF/
c4447f403b3616af206aa88393fc6e56
echo x - p5-Bio-SCF/Makefile
sed 's/^X//' >p5-Bio-SCF/Makefile << '510061dd94dc8c4d7985ddef38832b37'
X# New ports collection makefile for:	p5-Bio-SCF
X# Date created:				28 Aug, 2009
X# Whom:					Wen Heping <wenheping at gmail.com>
X#
X# $FreeBSD$
X#
X
XPORTNAME=	Bio-SCF
XPORTVERSION=	1.01
XCATEGORIES=	biology perl5
XMASTER_SITES=	CPAN
XPKGNAMEPREFIX=	p5-
X
XMAINTAINER=	wenheping at gmail.com
XCOMMENT=	Read and Update SCF Chromatographic Sequence Files
X
XBUILD_DEPENDS=	${LOCALBASE}/include/io_lib/scf.h:${PORTSDIR}/biology/iolib
XRUN_DEPENDS=	${BUILD_DEPENDS}
X
XCFLAGS+=	-I${LOCALBASE}/include
XLDFLAGS+=	-L${LOCALBASE}/lib
X
XPERL_CONFIGURE=	YES
X
XMAN3=		Bio::SCF.3
X
X.include <bsd.port.mk>
510061dd94dc8c4d7985ddef38832b37
exit



>Release-Note:
>Audit-Trail:
>Unformatted: