ports/128271: blastall segfaults when output is set to XML (-m 7)

[Julien Cigar]

>Number:         128271
>Category:       ports
>Synopsis:       blastall segfaults when output is set to XML (-m 7)
>Confidential:   no
>Severity:       serious
>Priority:       high
>Responsible:    freebsd-ports-bugs
>State:          open
>Quarter:        
>Keywords:       
>Date-Required:
>Class:          sw-bug
>Submitter-Id:   current-users
>Arrival-Date:   Tue Oct 21 15:30:04 UTC 2008
>Closed-Date:
>Last-Modified:
>Originator:     Julien Cigar
>Release:        7.0-RELEASE
>Organization:
ULB
>Environment:
FreeBSD bccm-it.vub.ac.be 7.0-RELEASE-p4 FreeBSD 7.0-RELEASE-p4 #2: Wed Sep 10 09:56:56 CEST 2008     root at bccm-it.vub.ac.be:/usr/obj/usr/src/sys/CUSTOM  i386

>Description:
Hello,

All is in the title, blastall segfaults on my machine when output is set to XML, default (text) output however works.
>How-To-Repeat:
jcigar at bccm-it rodentia % cat /tmp/98b284018c5e0f5dabd8eee9fc07def7.txt
ATGACAAATTTTCGAAAAACACACCCACTACTCAAAATTATTAATAACACATTTATTGACCTCCCAACCCCCTCAAAT

jcigar at bccm-it rodentia % blastall -p blastn -i /tmp/98b284018c5e0f5dabd8eee9fc07def7.txt -d rodentia.fasta -m 7
zsh: segmentation fault (core dumped)  blastall -p blastn -i /tmp/98b284018c5e0f5dabd8eee9fc07def7.txt -d  -m 7
>Fix:
upgrade to ncbi-toolkit 2.2.18 (current version is very outdated) ?

>Release-Note:
>Audit-Trail:
>Unformatted: