ports/128057: Update biology/avida to 2.8.1

[Christian Sturm]

>Number:         128057
>Category:       ports
>Synopsis:       Update biology/avida to 2.8.1
>Confidential:   no
>Severity:       non-critical
>Priority:       low
>Responsible:    freebsd-ports-bugs
>State:          open
>Quarter:        
>Keywords:       
>Date-Required:
>Class:          update
>Submitter-Id:   current-users
>Arrival-Date:   Mon Oct 13 12:40:05 UTC 2008
>Closed-Date:
>Last-Modified:
>Originator:     Christian Sturm
>Release:        7-stable
>Organization:
>Environment:
>Description:
I updated the unmaintained port biology/avida to recent stable version 2.8.1.
While building I get:

[ 57%] Building CXX object CMakeFiles/avidacore.dir/source/main/cTaskLib.o
/usr/ports/biology/avida/work/avida-src-2.8.1/source/main/cTaskLib.cc: In member function 'double cTaskLib::Task_Log2(cTaskContext&) const':
/usr/ports/biology/avida/work/avida-src-2.8.1/source/main/cTaskLib.cc:2507: error: 'log2' was not declared in this scope
*** Error code 1

A partial patch/diff is attached.
>How-To-Repeat:

>Fix:


Patch attached with submission follows:

? avida-cvs-diff
Index: Makefile
===================================================================
RCS file: /home/ncvs/ports/biology/avida/Makefile,v
retrieving revision 1.23
diff -u -p -r1.23 Makefile
--- Makefile	3 Sep 2008 02:57:44 -0000	1.23
+++ Makefile	13 Oct 2008 12:34:36 -0000
@@ -6,11 +6,11 @@
 #
 
 PORTNAME=	avida
-PORTVERSION=	2.4.3
+PORTVERSION=	2.8.1
 CATEGORIES=	biology
 MASTER_SITES=	${MASTER_SITE_SOURCEFORGE}
 MASTER_SITE_SUBDIR=	${PORTNAME}
-DISTNAME=	${PORTNAME}-src-${PORTVERSION}
+DISTNAME=	${PORTNAME}-${PORTVERSION}-src
 
 MAINTAINER=	ports at FreeBSD.org
 COMMENT=	Avida is an auto-adaptive genetic system designed for ALife research
@@ -24,7 +24,7 @@ CMAKE_ARGS=	-DPROJECT_BINARY_DIR=${WRKSR
 		-DAVD_UNIT_TESTS:BOOL=OFF\
 		-DCMAKE_BUILD_TYPE:STRING=Release
 
-WRKSRC=		${WRKDIR}/${PORTNAME}
+WRKSRC=		${WRKDIR}/${PORTNAME}-src-${PORTVERSION}
 
 do-build:
 	@(cd ${BUILD_WRKSRC}; \
Index: distinfo
===================================================================
RCS file: /home/ncvs/ports/biology/avida/distinfo,v
retrieving revision 1.5
diff -u -p -r1.5 distinfo
--- distinfo	8 Jul 2006 03:36:36 -0000	1.5
+++ distinfo	13 Oct 2008 12:34:36 -0000
@@ -1,3 +1,3 @@
-MD5 (avida-src-2.4.3.tar.gz) = 44c3f1df0fe5d62a08cb0a64dc9c5ac2
-SHA256 (avida-src-2.4.3.tar.gz) = 4a883138d9da57c99defe521de96e7851f453e1a003c978a6dbb178c8a51ba11
-SIZE (avida-src-2.4.3.tar.gz) = 1725948
+MD5 (avida-2.8.1-src.tar.gz) = 99d9405921a23df1813e34c96106cd47
+SHA256 (avida-2.8.1-src.tar.gz) = 554a82081f550e49f795ecda34d6e19a91239e8dc500b6590f46d08839179ef7
+SIZE (avida-2.8.1-src.tar.gz) = 1609168


>Release-Note:
>Audit-Trail:
>Unformatted: