ports/128520: Update math/R to version 2.7.2

Sat Nov 1 15:40:02 UTC 2008

>Number:         128520
>Category:       ports
>Synopsis:       Update math/R to version 2.7.2
>Confidential:   no
>Severity:       non-critical
>Priority:       low
>Responsible:    freebsd-ports-bugs
>State:          open
>Quarter:        
>Keywords:       
>Date-Required:
>Class:          change-request
>Submitter-Id:   current-users
>Arrival-Date:   Sat Nov 01 15:40:01 UTC 2008
>Closed-Date:
>Last-Modified:
>Originator:     Pedro F. Giffuni
>Release:        FreeBSD-7.0-RELEASE (amd64)
>Organization:
>Environment:
%uname -a
FreeBSD kakumen.cable.net.co 7.0-RELEASE-p3 FreeBSD 7.0-RELEASE-p3 #0: Fri Aug  8 16:42:27 COT 2008     root at kakumen.cable.net.co:/usr/src/sys/amd64/compile/GENERIC  amd64

>Description:
- Update to version 2.7.2
- Add back the PDF_MANUAL option but leave it off by default.

I know R-2.8.0 is available but this was easier for the time being.
>How-To-Repeat:

>Fix:
diff -ruN R.orig/Makefile R/Makefile

--- R.orig/Makefile	2008-11-01 09:55:47.000000000 -0500
+++ R/Makefile	2008-11-01 10:16:21.000000000 -0500
@@ -7,7 +7,7 @@
 #
 
 PORTNAME=	R
-PORTVERSION=	2.7.1
+PORTVERSION=	2.7.2
 CATEGORIES=	math lang
 MASTER_SITES=	http://cran.r-project.org/src/base/R-2/ \
 		ftp://cran.r-project.org/pub/R/src/base/R-2/ \
@@ -39,6 +39,7 @@
 		GHOSTSCRIPT  "Enable the [dev2]bitmap() graphics devices" on  \
 		PCRE_PORT    "Use PCRE port instead of bundled source"    on  \
 		DVI_MANUALS  "Install DVI manuals (requires TeX)"         off \
+		PDF_MANUALS  "Install PDF manuals (requires TeX)"         off \
 		INFO_MANUALS "Install GNU info manuals"                   on  \
 		LETTER_PAPER "Use US Letter paper"                        off
 
@@ -134,6 +135,15 @@
 PLIST_SUB+=	DVI_MANUAL="@comment "
 .endif
 
+.if defined(WITHOUT_PDF_MANUALS) && !defined(NOPORTDOCS)
+PLIST_SUB+=     PDF_MANUAL="@comment "
+.else
+PLIST_SUB+=     PDF_MANUAL=""
+BUILD_DEPENDS+= pdflatex:${PORTSDIR}/print/teTeX-base
+ALL_TARGET+=    pdf
+INSTALL_TARGET+=install-pdf
+.endif
+
 .if defined(WITH_INFO_MANUALS) && !defined(NOPORTDOCS)
 ALL_TARGET+=	info
 INFO=		R-FAQ R-admin R-data R-exts R-intro R-lang
diff -ruN R.orig/distinfo R/distinfo
--- R.orig/distinfo	2008-11-01 09:55:47.000000000 -0500
+++ R/distinfo	2008-11-01 09:58:26.000000000 -0500
@@ -1,3 +1,3 @@
-MD5 (R-2.7.1.tar.gz) = 565b06a1f3f11020399934cc7b47a59d
-SHA256 (R-2.7.1.tar.gz) = f0449d23257f98d71ed7749a2ed30f69023a05259f392e4c5fd8fac9db485de7
-SIZE (R-2.7.1.tar.gz) = 16413667
+MD5 (R-2.7.2.tar.gz) = 6122945e9301825b97a506151b3cefde
+SHA256 (R-2.7.2.tar.gz) = 7184c1f85fafce518e6dbccb5a64ba47a62d8694c7019da0e1c1e83ff98c3ff4
+SIZE (R-2.7.2.tar.gz) = 16466658
diff -ruN R.orig/pkg-plist R/pkg-plist
--- R.orig/pkg-plist	2008-11-01 09:55:47.000000000 -0500
+++ R/pkg-plist	2008-11-01 10:23:16.000000000 -0500
@@ -193,11 +193,13 @@
 lib/R/library/MASS/R-ex/parcoord.R
 lib/R/library/MASS/R-ex/petrol.R
 lib/R/library/MASS/R-ex/plot.mca.R
+lib/R/library/MASS/R-ex/plot.profile.R
 lib/R/library/MASS/R-ex/polr.R
 lib/R/library/MASS/R-ex/predict.glmmPQL.R
 lib/R/library/MASS/R-ex/predict.lda.R
 lib/R/library/MASS/R-ex/predict.lqs.R
 lib/R/library/MASS/R-ex/predict.qda.R
+lib/R/library/MASS/R-ex/profile.glm.R
 lib/R/library/MASS/R-ex/qda.R
 lib/R/library/MASS/R-ex/rational.R
 lib/R/library/MASS/R-ex/renumerate.R
@@ -335,12 +337,14 @@
 lib/R/library/MASS/help/phones
 lib/R/library/MASS/help/plot.lda
 lib/R/library/MASS/help/plot.mca
+lib/R/library/MASS/help/plot.profile
 lib/R/library/MASS/help/polr
 lib/R/library/MASS/help/predict.glmmPQL
 lib/R/library/MASS/help/predict.lda
 lib/R/library/MASS/help/predict.lqs
 lib/R/library/MASS/help/predict.mca
 lib/R/library/MASS/help/predict.qda
+lib/R/library/MASS/help/profile.glm
 lib/R/library/MASS/help/qda
 lib/R/library/MASS/help/quine
 lib/R/library/MASS/help/rational
@@ -490,12 +494,14 @@
 lib/R/library/MASS/html/phones.html
 lib/R/library/MASS/html/plot.lda.html
 lib/R/library/MASS/html/plot.mca.html
+lib/R/library/MASS/html/plot.profile.html
 lib/R/library/MASS/html/polr.html
 lib/R/library/MASS/html/predict.glmmPQL.html
 lib/R/library/MASS/html/predict.lda.html
 lib/R/library/MASS/html/predict.lqs.html
 lib/R/library/MASS/html/predict.mca.html
 lib/R/library/MASS/html/predict.qda.html
+lib/R/library/MASS/html/profile.glm.html
 lib/R/library/MASS/html/qda.html
 lib/R/library/MASS/html/quine.html
 lib/R/library/MASS/html/rational.html
@@ -644,12 +650,14 @@
 lib/R/library/MASS/latex/phones.tex
 lib/R/library/MASS/latex/plot.lda.tex
 lib/R/library/MASS/latex/plot.mca.tex
+lib/R/library/MASS/latex/plot.profile.tex
 lib/R/library/MASS/latex/polr.tex
 lib/R/library/MASS/latex/predict.glmmPQL.tex
 lib/R/library/MASS/latex/predict.lda.tex
 lib/R/library/MASS/latex/predict.lqs.tex
 lib/R/library/MASS/latex/predict.mca.tex
 lib/R/library/MASS/latex/predict.qda.tex
+lib/R/library/MASS/latex/profile.glm.tex
 lib/R/library/MASS/latex/qda.tex
 lib/R/library/MASS/latex/quine.tex
 lib/R/library/MASS/latex/rational.tex
@@ -8823,6 +8831,14 @@
 %%DVI_MANUAL%%%%DOCSDIR%%/manual/images/ice.eps
 %%DVI_MANUAL%%%%DOCSDIR%%/manual/refman.dvi
 %%DVI_MANUAL%%@dirrm %%DOCSDIR%%/manual/images
+%%PDF_MANUAL%%%%DOCSDIR%%/manual/R-FAQ.pdf
+%%PDF_MANUAL%%%%DOCSDIR%%/manual/R-admin.pdf
+%%PDF_MANUAL%%%%DOCSDIR%%/manual/R-data.pdf
+%%PDF_MANUAL%%%%DOCSDIR%%/manual/R-exts.pdf
+%%PDF_MANUAL%%%%DOCSDIR%%/manual/R-intro.pdf
+%%PDF_MANUAL%%%%DOCSDIR%%/manual/R-ints.pdf
+%%PDF_MANUAL%%%%DOCSDIR%%/manual/R-lang.pdf
+%%PDF_MANUAL%%%%DOCSDIR%%/manual/refman.pdf
 @dirrm %%DOCSDIR%%/manual
 @dirrm %%DOCSDIR%%/html/search
 @dirrm %%DOCSDIR%%/html


>Release-Note:
>Audit-Trail:
>Unformatted:

