ports/118548: commit references a PR

dfilter service dfilter at FreeBSD.ORG
Sat May 24 07:10:07 UTC 2008

The following reply was made to PR ports/118548; it has been noted by GNATS.

From: dfilter at FreeBSD.ORG (dfilter service)
To: bug-followup at FreeBSD.org
Subject: Re: ports/118548: commit references a PR
Date: Sat, 24 May 2008 07:03:28 +0000 (UTC)

 edwin       2008-05-24 07:03:23 UTC
   FreeBSD ports repository
   Modified files:
     biology              Makefile 
   Added files:
     biology/phrap        Makefile distinfo pkg-descr 
     biology/phrap/files  patch-makefile 
   New port: biology/consed viewing and editing workbench for sequence
           Consed is a tool for viewing, editing, and finishing sequence
           The port is constituted of 4 parts:
           biology/phred: base caller with quality evaluation
           biology/phrap: sequence assembler for shotgun sequencing
           biology/consed: workbench
           biology/phd2fasta: small utility
           All these can be used separately; however, most function
           of consed depends on the others.
           Although these programs are licensed freely for academic
           and nonprofit purposes, users have to contact the authors
           to get the softwares.
           Phred (including phd2fasta) and phrap are emailed,
           and consed can be downloaded to a restricted IP address.
           For commercial users, the licensing fee is ca. $10,000 at
           the time of writing.
   PR:             ports/118548
   Submitted by:   Motomichi Matsuzaki <mzaki at biol.s.u-tokyo.ac.jp>
   Revision  Changes    Path
   1.100     +1 -0      ports/biology/Makefile
   1.1       +62 -0     ports/biology/phrap/Makefile (new)
   1.1       +3 -0      ports/biology/phrap/distinfo (new)
   1.1       +27 -0     ports/biology/phrap/files/patch-makefile (new)
   1.1       +21 -0     ports/biology/phrap/pkg-descr (new)
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