ports/118548: commit references a PR

[dfilter service]

The following reply was made to PR ports/118548; it has been noted by GNATS.

From: dfilter at FreeBSD.ORG (dfilter service)
To: bug-followup at FreeBSD.org
Cc:  
Subject: Re: ports/118548: commit references a PR
Date: Sat, 24 May 2008 07:00:41 +0000 (UTC)

 edwin       2008-05-24 07:00:37 UTC
 
   FreeBSD ports repository
 
   Modified files:
     biology              Makefile 
   Added files:
     biology/consed       Makefile distinfo pkg-descr 
                          pkg-plist.examples 
     biology/consed/files patch-misc_mktrace.c 
                          patch-scripts_addReads2Consed.perl 
                          patch-scripts_determineReadTypes.perl 
                          patch-scripts_phredPhrap 
   Log:
   New port: biology/consed viewing and editing workbench for sequence
   assembly
   
           Consed is a tool for viewing, editing, and finishing sequence assemblies.
   
           The port is constituted of 4 parts:
           biology/phred: base caller with quality evaluation
           biology/phrap: sequence assembler for shotgun sequencing
           biology/consed: workbench
           biology/phd2fasta: small utility
   
           All these can be used separately; however, most function
           of consed depends on the others.
   
           Although these programs are licensed freely for academic
           and nonprofit purposes, users have to contact the authors
           to get the softwares.
           Phred (including phd2fasta) and phrap are emailed,
           and consed can be downloaded to a restricted IP address.
           For commercial users, the licensing fee is ca. $10,000 at
           the time of writing.
   
   PR:             ports/118548
   Submitted by:   Motomichi Matsuzaki <mzaki at biol.s.u-tokyo.ac.jp>
   
   Revision  Changes    Path
   1.98      +1 -0      ports/biology/Makefile
   1.1       +104 -0    ports/biology/consed/Makefile (new)
   1.1       +3 -0      ports/biology/consed/distinfo (new)
   1.1       +14 -0     ports/biology/consed/files/patch-misc_mktrace.c (new)
   1.1       +11 -0     ports/biology/consed/files/patch-scripts_addReads2Consed.perl (new)
   1.1       +11 -0     ports/biology/consed/files/patch-scripts_determineReadTypes.perl (new)
   1.1       +36 -0     ports/biology/consed/files/patch-scripts_phredPhrap (new)
   1.1       +4 -0      ports/biology/consed/pkg-descr (new)
   1.1       +990 -0    ports/biology/consed/pkg-plist.examples (new)
 _______________________________________________
 cvs-all at freebsd.org mailing list
 http://lists.freebsd.org/mailman/listinfo/cvs-all
 To unsubscribe, send any mail to "cvs-all-unsubscribe at freebsd.org"