ports/121126: New port: science/caret Computerized Anatomical Reconstruction and Editing Toolkit

[Jason Bacon]

The following reply was made to PR ports/121126; it has been noted by GNATS.

From: Jason Bacon <jwbacon at tds.net>
To: bug-followup at freebsd.org, bacon at smithers.neuro.mcw.edu
Cc:  
Subject: Re: ports/121126: New port: science/caret Computerized Anatomical Reconstruction and Editing Toolkit
Date: Mon, 24 Mar 2008 09:36:09 -0500

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 Patch for flat_fluid attached.  Should be ready to commit now.
 
 	Jason
 
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 diff -ruN caret.orig/Makefile caret/Makefile
 --- caret.orig/Makefile	2008-03-24 09:30:49.000000000 -0500
 +++ caret/Makefile	2008-03-21 10:59:40.000000000 -0500
 @@ -71,7 +71,16 @@
  .endif
  
  .if defined(WITH_FLAT_FLUID)
 +LIB_DEPENDS+=	atlas.2:${PORTSDIR}/math/atlas
 +
 +PLIST_FILES+=	bin/flat_fluid
 +
 +post-patch:
 +	${REINPLACE_CMD} "s|-latlas|-latlas -lgfortran|" ${WRKSRC}/flat_fluid/Makefile.FreeBSD
 +	${REINPLACE_CMD} "s|brainSet->getCaretHomeDirectory()|\"${PREFIX}\"|" ${WRKSRC}/caret_brain_set/BrainModelRunCaretUtilityProgram.cxx
 +
  post-build:
 +	(d=`ls -d /usr/local/lib/gcc*`; ${REINPLACE_CMD} "s|-L /usr/local/lib|-L${LOCALBASE}/lib -L$${d} -rpath $${d}|" ${WRKSRC}/flat_fluid/Makefile.FreeBSD)
  	(cd ${WRKSRC}/flat_fluid; ${MAKE} -f Makefile.FreeBSD)
  .endif
  
 diff -ruN caret.orig/files/patch-caret_brain_set-BrainModelRunCaretUtilityProgram.cxx caret/files/patch-caret_brain_set-BrainModelRunCaretUtilityProgram.cxx
 --- caret.orig/files/patch-caret_brain_set-BrainModelRunCaretUtilityProgram.cxx	1969-12-31 18:00:00.000000000 -0600
 +++ caret/files/patch-caret_brain_set-BrainModelRunCaretUtilityProgram.cxx	2008-03-21 10:58:01.000000000 -0500
 @@ -0,0 +1,11 @@
 +--- caret_brain_set/BrainModelRunCaretUtilityProgram.cxx.orig	2008-03-21 10:56:47.000000000 -0500
 ++++ caret_brain_set/BrainModelRunCaretUtilityProgram.cxx	2008-03-21 10:56:59.000000000 -0500
 +@@ -101,7 +101,7 @@
 +    // On a Macintosh, Qt's QProcess expects the program to be a Mac Application bundle so
 +    // simple command line programs have to be specially handled on the Mac.
 +    //
 +-   if (doingMacCommandLineProgram) {
 ++   if (1) {
 +       if (utilityProgramArguments.isEmpty() == false) {
 +          pgm.append(" ");
 +          pgm.append(utilityProgramArguments);
 
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