ports/119845: math/atlas fails during build on i386

Mon Jan 21 00:40:02 UTC 2008

>Number:         119845
>Category:       ports
>Synopsis:       math/atlas fails during build on i386
>Confidential:   no
>Severity:       non-critical
>Priority:       low
>Responsible:    freebsd-ports-bugs
>State:          open
>Quarter:        
>Keywords:       
>Date-Required:
>Class:          sw-bug
>Submitter-Id:   current-users
>Arrival-Date:   Mon Jan 21 00:40:01 UTC 2008
>Closed-Date:
>Last-Modified:
>Originator:     Rick Voland
>Release:        FreeBSD 6.3-RELEASE
>Organization:
>Environment:
FreeBSD karl.local.bsd 6.3-RELEASE FreeBSD 6.3-RELEASE #0: Sat Jan 19 18:33:09 CST 2008     root at karl.local.bsd:/usr/obj/usr/src/sys/GENERIC  i386
>Description:
I am trying to update math/atlas from atlas-3.6.0_4,1 to 3.8.0.
Ports updated by CVS on January 19, 2008.

CPU: Intel(R) Pentium(R) M processor 1.70GHz (1696.27-MHz 686-class CPU)
  Origin = "GenuineIntel"  Id = 0x6d6  Stepping = 6
  Features=0xafe9fbbf<FPU,VME,DE,PSE,TSC,MSR,MCE,CX8,APIC,SEP,MTRR,PGE,MCA,CMOV,PAT,CLFLUSH,DTS,ACPI,MMX,FXSR,SSE,SSE2,SS,TM,PBE>
  Features2=0x180<EST,TM2>
real memory  = 1064173568 (1014 MB)
avail memory = 1028157440 (980 MB)

$ gcc42 -v
Using built-in specs.
Target: i386-portbld-freebsd6.3
Configured with: ./..//gcc-4.2-20080116/configure --disable-nls --with-system-zlib --with-libiconv-prefix=/usr/local --with-gmp=/usr/local --program-suffix=42 --libdir=/usr/local/lib/gcc-4.2.3 --with-gxx-include-dir=/usr/local/lib/gcc-4.2.3/include/c++/ --disable-rpath --prefix=/usr/local --mandir=/usr/local/man --infodir=/usr/local/info/gcc42 i386-portbld-freebsd6.3
Thread model: posix
gcc version 4.2.3 20080116 (prerelease)

(math/atlas also failed a few weeks ago on FreeBSD 6.2
also using atlas-3.8 from ports)

----------------------------last few lines of output

Stop in /usr/ports/math/atlas/work/ATLAS/NON_THREADED_PIC/tune/blas/ger.
Assertion failed: (imax), function RunCases, file /usr/ports/math/atlas/work/ATL
AS/NON_THREADED_PIC/..//tune/blas/ger/r1search.c, line 471.
ATL_ger1_axpy.c : 0.00
ATL_ger1_4x4_1.c : 0.00
ATL_ger1_1x4_0.c : 0.00
ATL_ger1_8x4_0.c : 0.00
ATL_ger1_SSE.c : 0.00
*** Signal 6

Stop in /usr/ports/math/atlas/work/ATLAS/NON_THREADED_PIC/tune/blas/ger.
*** Error code 1

Stop in /usr/ports/math/atlas/work/ATLAS/NON_THREADED_PIC/bin.
ERROR 776 DURING R1TUNE!!.  CHECK INSTALL_LOG/dR1TUNE.LOG FOR DETAILS.
cd /usr/ports/math/atlas/work/ATLAS/NON_THREADED_PIC ; make error_report
make -f Make.top error_report
uname -a 2>&1 >> bin/INSTALL_LOG/ERROR.LOG
cc -v 2>&1  >> bin/INSTALL_LOG/ERROR.LOG
Using built-in specs.
Configured with: FreeBSD/i386 system compiler
Thread model: posix
gcc version 3.4.6 [FreeBSD] 20060305
cc -V 2>&1  >> bin/INSTALL_LOG/ERROR.LOG
cc: `-V' option must have argument
*** Error code 1 (ignored)
cc --version 2>&1  >> bin/INSTALL_LOG/ERROR.LOG
tar cf error_i386.tar Make.inc bin/INSTALL_LOG/*
gzip --best error_i386.tar
mv error_i386.tar.gz error_i386.tgz
Error report error_<ARCH>.tgz has been created in your top-level ATLAS
directory.  Be sure to include this file in any help request.
cat: ../../CONFIG/error.txt: No such file or directory
cat: ../../CONFIG/error.txt: No such file or directory
*** Error code 255

Stop in /usr/ports/math/atlas/work/ATLAS/NON_THREADED_PIC.
*** Error code 1

Stop in /usr/ports/math/atlas.
** Command failed [exit code 1]: /usr/bin/script -qa /tmp/portupgrade.1124.0 env
 UPGRADE_TOOL=portupgrade UPGRADE_PORT=atlas-3.6.0_4,1 UPGRADE_PORT_VER=3.6.0_4,
1 make
** Fix the problem and try again.
** Listing the failed packages (*:skipped / !:failed)
        ! math/atlas (atlas-3.6.0_4,1)  (compiler error)
--->  Packages processed: 0 done, 0 ignored, 0 skipped and 1 failed

>How-To-Repeat:
portupgrade math/atlas 
using atlas-3.8 from ports

>Fix:

>Release-Note:
>Audit-Trail:
>Unformatted: