ports/121126: New port: science/caret Computerized Anatomical Reconstruction and Editing Toolkit
Jason Bacon
bacon at smithers.neuro.mcw.edu
Tue Feb 26 17:50:01 UTC 2008
>Number: 121126
>Category: ports
>Synopsis: New port: science/caret Computerized Anatomical Reconstruction and Editing Toolkit
>Confidential: no
>Severity: non-critical
>Priority: medium
>Responsible: freebsd-ports-bugs
>State: open
>Quarter:
>Keywords:
>Date-Required:
>Class: change-request
>Submitter-Id: current-users
>Arrival-Date: Tue Feb 26 17:50:00 UTC 2008
>Closed-Date:
>Last-Modified:
>Originator: Jason Bacon
>Release: FreeBSD 6.1-RELEASE-p17 i386
>Organization:
MCW
>Environment:
System: FreeBSD smithers.neuro.mcw.edu 6.1-RELEASE-p17 FreeBSD 6.1-RELEASE-p17 #0: Mon Jul 2 15:25:34 CDT 2007 bacon at pcbsd:/usr/obj/usr/src/sys/MCWPCBSD i386
>Description:
Caret is a 3D tool for fMRI brain research.
Note: This port depends PR:
ports/119904: rearrange x11-toolkits/qwt* ports
>How-To-Repeat:
>Fix:
# This is a shell archive. Save it in a file, remove anything before
# this line, and then unpack it by entering "sh file". Note, it may
# create directories; files and directories will be owned by you and
# have default permissions.
#
# This archive contains:
#
# science/caret
# science/caret/files
# science/caret/files/pkg-message.in
# science/caret/files/patch-caret_command-main.cxx
# science/caret/files/patch-Makefile
# science/caret/files/patch-caret-main.cxx
# science/caret/files/patch-caret_qmake_include.pro
# science/caret/files/caret.cshrc.in
# science/caret/files/caret.profile.in
# science/caret/files/caret.1.in
# science/caret/Makefile
# science/caret/distinfo
# science/caret/pkg-descr
# science/caret/pkg-plist
#
echo c - science/caret
mkdir -p science/caret > /dev/null 2>&1
echo c - science/caret/files
mkdir -p science/caret/files > /dev/null 2>&1
echo x - science/caret/files/pkg-message.in
sed 's/^X//' >science/caret/files/pkg-message.in << 'END-of-science/caret/files/pkg-message.in'
X=============================================================================
X
XCaret is an OpenGL application, and requires the nVIDIA driver
X(x11/nvidia-driver) or DRI (graphics/dri) for 3D graphics to function.
X
X=============================================================================
X
XAll caret users will need the environment variable CARET5_HOME set to
X%%DATADIR%%.
X
XC-shell family:
X setenv CARET5_HOME %%DATADIR%%
X
XBourne-shell family:
X CARET5_HOME=%%DATADIR%%
X export CARET5_HOME
X
XAs an alternative to manual setup shown above, this port (and many other MRI
Xports) include configuration scripts to automaticaly perform this setup.
XUsing these scripts, a single addition to your shell's startup script will
Xautomatically configure the environment for all MRI ports that include
Xa configuration script.
X
XTo utilize these scripts in C-shell compatible shells, add the following
Xto your .cshrc:
X
Xforeach script (%%PREFIX%%/etc/mri/*.cshrc)
X source ${script}
Xend
X
XFor Bourne-shell compatibles, add the following to your .profile:
X
Xfor script in %%PREFIX%%/etc/mri/*.profile; do
X . ${script}
Xdone
X
X=============================================================================
X
XYou must add /usr/local/lib/qt4/plugins/imageformats/ to your library path
Xso that caret5 will find libqgif.so. For this session, run the following
Xas root:
X
X ldconfig -m /usr/local/lib/qt4/plugins/imageformats
X
XTo make ldconfig scan this directory at boot time, add
X
X /usr/local/lib/qt4/plugins/imageformats
X
Xto
X
X /etc/ld-elf.so.conf
X
X=============================================================================
END-of-science/caret/files/pkg-message.in
echo x - science/caret/files/patch-caret_command-main.cxx
sed 's/^X//' >science/caret/files/patch-caret_command-main.cxx << 'END-of-science/caret/files/patch-caret_command-main.cxx'
X--- caret_command/main.cxx.orig Sun Dec 23 10:45:19 2007
X+++ caret_command/main.cxx Sun Dec 23 10:45:32 2007
X@@ -14304,8 +14304,8 @@
X //
X // Get image plugins so JPEGs can be loaded
X //
X- Q_IMPORT_PLUGIN(QJpegPlugin)
X- Q_IMPORT_PLUGIN(QGifPlugin)
X+ //Q_IMPORT_PLUGIN(QJpegPlugin)
X+ //Q_IMPORT_PLUGIN(QGifPlugin)
X
X //
X // Command line QT application
END-of-science/caret/files/patch-caret_command-main.cxx
echo x - science/caret/files/patch-Makefile
sed 's/^X//' >science/caret/files/patch-Makefile << 'END-of-science/caret/files/patch-Makefile'
X--- Makefile.orig Tue Apr 10 12:38:47 2007
X+++ Makefile Sat Dec 22 21:21:44 2007
X@@ -68,29 +68,29 @@
X
X qmake-static:
X @for i in ${LIBS} ; do \
X- echo "creating makefile for static libs with qmake for " $$i ; \
X+ echo "creating makefile for static libs with qmake-qt4 for " $$i ; \
X cd $$i ; \
X- qmake ; \
X+ qmake-qt4 ; \
X cd .. ; \
X done
X @for i in ${PROGS} ; do \
X- echo "creating makefile with qmake for " $$i ; \
X+ echo "creating makefile with qmake-qt4 for " $$i ; \
X cd $$i ; \
X- qmake ; \
X+ qmake-qt4 ; \
X cd .. ; \
X done
X
X qmake-dynamic:
X @for i in ${LIBS} ; do \
X- echo "creating makefile for dynamic libs with qmake for " $$i ; \
X+ echo "creating makefile for dynamic libs with qmake-qt4 for " $$i ; \
X cd $$i ; \
X- qmake "CONFIG+=dll"; \
X+ qmake-qt4 "CONFIG+=dll"; \
X cd .. ; \
X done
X @for i in ${PROGS} ; do \
X- echo "creating makefile with qmake for " $$i ; \
X+ echo "creating makefile with qmake-qt4 for " $$i ; \
X cd $$i ; \
X- qmake ; \
X+ qmake-qt4 ; \
X cd .. ; \
X done
X
END-of-science/caret/files/patch-Makefile
echo x - science/caret/files/patch-caret-main.cxx
sed 's/^X//' >science/caret/files/patch-caret-main.cxx << 'END-of-science/caret/files/patch-caret-main.cxx'
X--- caret/main.cxx.orig Fri Dec 1 14:50:59 2006
X+++ caret/main.cxx Sun Dec 23 10:35:04 2007
X@@ -408,8 +408,8 @@
X //
X // needed for static linking to have JPEG support
X //
X- Q_IMPORT_PLUGIN(QJpegPlugin)
X- Q_IMPORT_PLUGIN(QGifPlugin)
X+ //Q_IMPORT_PLUGIN(QJpegPlugin)
X+ //Q_IMPORT_PLUGIN(QGifPlugin)
X
X #ifdef Q_OS_MACX
X GuiMacOSXApplication app(argc, argv);
END-of-science/caret/files/patch-caret-main.cxx
echo x - science/caret/files/patch-caret_qmake_include.pro
sed 's/^X//' >science/caret/files/patch-caret_qmake_include.pro << 'END-of-science/caret/files/patch-caret_qmake_include.pro'
X--- caret_qmake_include.pro.orig Thu Jun 7 13:38:00 2007
X+++ caret_qmake_include.pro Fri Jan 18 10:20:57 2008
X@@ -137,20 +137,15 @@
X VTK_LIBS = ../caret_vtk4_classes/libCaretVtk4Classes.a
X }
X VTK_LIBS += \
X- -L$(VTK_LIB_DIR) \
X- -lvtkRendering \
X- -lvtkFiltering \
X- -lvtkGenericFiltering \
X- -lvtkImaging \
X- -lvtkGraphics \
X- -lvtkIO \
X- -lvtkMPEG2Encode \
X- -lvtkFiltering \
X- -lvtkCommon \
X- -lvtkjpeg \
X- -lvtkpng \
X- -lvtkexpat \
X- -lvtkzlib
X+ -L$(VTK_LIB_DIR) \
X+ -lvtkFiltering \
X+ -lvtkGenericFiltering \
X+ -lvtkImaging \
X+ -lvtkGraphics \
X+ -lvtkMPEG2Encode \
X+ -lvtkIO \
X+ -lvtkFiltering \
X+ -lvtkCommon
X }
X
X #
X@@ -324,15 +319,21 @@
X # Unix (but not Mac) unique stuff
X #
X unix:!macx {
X+ LIBS += -rpath $(LOCALBASE)/lib/plugins/imageformats
X #
X # QWT libraries
X #
X QWT_LIBS = -L$(QWT_LIB_DIR) \
X- -lqwt
X+ -lqwt
X
X QMAKE_CXXFLAGS_RELEASE += -Wno-deprecated
X QMAKE_CXXFLAGS_DEBUG += -Wno-deprecated
X-}
X-
X-
X
X+ #
X+ # for FreeBSD systems
X+ #
X+ exists( /etc/rc.conf ) {
X+ QMAKE_CXXFLAGS_RELEASE += -Wno-deprecated
X+ QMAKE_CXXFLAGS_DEBUG += -Wno-deprecated
X+ }
X+}
END-of-science/caret/files/patch-caret_qmake_include.pro
echo x - science/caret/files/caret.cshrc.in
sed 's/^X//' >science/caret/files/caret.cshrc.in << 'END-of-science/caret/files/caret.cshrc.in'
Xsetenv CARET5_HOME %%DATADIR%%
END-of-science/caret/files/caret.cshrc.in
echo x - science/caret/files/caret.profile.in
sed 's/^X//' >science/caret/files/caret.profile.in << 'END-of-science/caret/files/caret.profile.in'
XCARET5_HOME=%%DATADIR%%
Xexport CARET5_HOME
END-of-science/caret/files/caret.profile.in
echo x - science/caret/files/caret.1.in
sed 's/^X//' >science/caret/files/caret.1.in << 'END-of-science/caret/files/caret.1.in'
X.TH CARET 1
X.SH NAME \" Section header
X.PP
X
XCaret \- Computerized Anatomical Reconstruction and Editing Toolkit
X.SH SYNOPSIS
X.PP
X.nf
X.na
Xcaret5
X.ad
X.fi
X
X\" Optional sections
X.SH "DESCRIPTION"
X
X.B Caret
X(Computerized Anatomical Reconstruction and Editing Toolkit)
Xis designed for interactively viewing, manipulating, and analyzing surface
Xreconstructions of the cerebral and cerebellar cortex.
X
XFor full documentation, please consult the Help menu within caret5.
X
X.SH ENVIRONMENT
X
XAll caret users will need the environment variable CARET5_HOME set to
X%%DATADIR%%.
X
X.nf
X.na
XC-shell family:
X setenv CARET5_HOME %%DATADIR%%
X
XBourne-shell family:
X CARET5_HOME=%%DATADIR%%
X export CARET5_HOME
X.ad
X.fi
X
XAs an alternative to manual setup shown above, this port (and many other MRI
Xports) include configuration scripts to automaticaly perform this setup.
XUsing these scripts, a single addition to your shell's startup script will
Xautomatically configure the environment for all MRI ports that include
Xa configuration script.
X
XTo utilize these scripts in C-shell compatible shells, add the following
Xto your .cshrc:
X
X.nf
X.na
Xforeach script (%%PREFIX%%/etc/mri/*.cshrc)
X source ${script}
Xend
X
XFor Bourne-shell compatibles, add the following to your .profile:
X
Xfor script in %%PREFIX%%/etc/mri/*.profile; do
X . ${script}
Xdone
X.ad
X.fi
X
X
X.SH INSTALLATION
X
XCaret is an OpenGL application, and requires the nVIDIA driver
X(x11/nvidia-driver) or DRI (graphics/dri) for 3D graphics to function.
X
XYou must add /usr/local/lib/qt4/plugins/imageformats/ to your library path
Xso that caret5 will find libqgif.so. For this session, run the following
Xas root:
X
X.nf
X.na
X ldconfig -m /usr/local/lib/qt4/plugins/imageformats
X
XTo make ldconfig scan this directory at boot time, add
X
X /usr/local/lib/qt4/plugins/imageformats
X
Xto
X
X /etc/ld-elf.so.conf
X.ad
X.fi
X
X.SH FILES
X.nf
X.na
XEnvironment initialization scripts:
X
X%%PREFIX%%/etc/mri/caret.cshrc
X%%PREFIX%%/etc/mri/caret.profile
X.ad
X.fi
X
X.SH "SEE ALSO"
Xafni(1), dtiquery(1), freesurfer(1), fsl(1)
X
END-of-science/caret/files/caret.1.in
echo x - science/caret/Makefile
sed 's/^X//' >science/caret/Makefile << 'END-of-science/caret/Makefile'
X############################################################################
X# New ports collection Makefile for: caret
X# Date created: 8 Mar 2005
X# Whom: Jason W. Bacon <jwbacon at tds.net>
X#
X# $FreeBSD$
X#
X############################################################################
X
XPORTNAME= caret
XPORTVERSION= 5.51
XCATEGORIES= science biology
XMASTER_SITES= http://www.neuro.mcw.edu/Ports/distfiles/Caret/
XDISTFILES= caret_source.v${PORTVERSION}.zip \
X caret_distfiles.v${PORTVERSION}.zip
X
XMAINTAINER= jwbacon at tds.net
XCOMMENT= Computerized Anatomical Reconstruction and Editing Toolkit
X
XLIB_DEPENDS= minc.1:${PORTSDIR}/science/minc \
X netcdf.[1-4]:${PORTSDIR}/science/netcdf \
X vtkCommon.5:${PORTSDIR}/math/vtk5 \
X lapack.[3-4]:${PORTSDIR}/math/lapack \
X qwt.5:${PORTSDIR}/x11-toolkits/qwt5-devel
XBUILD_DEPENDS= cmake:${PORTSDIR}/devel/cmake \
X ${LOCALBASE}/bin/qmake-qt4:${PORTSDIR}/devel/qmake4
XRUN_DEPENDS= mpeg_encode:${PORTSDIR}/multimedia/mpeg_encode \
X mpeg_play:${PORTSDIR}/multimedia/mpeg_play
X
XCONFLICTS= caret-5.[34]*
X
XUSE_QT_VER= 4
X
XRESTRICTED= Must register to download at http://brainmap.wustl.edu/resources/caretnew.html
X
XUSE_ZIP= yes
X
XWRKSRC= ${WRKDIR}/caret_source
XALL_TARGET= rebuild
XMAKE_ENV= QTDIR="${LOCALBASE}" \
X QMAKESPEC="${LOCALBASE}/share/qt4/mkspecs/freebsd-g++" \
X QWT_INC_DIR="${LOCALBASE}/include/qwt" \
X QWT_LIB_DIR="${LOCALBASE}/lib" \
X NETCDF_INC_DIR="${LOCALBASE}/include" \
X NETCDF_LIB_DIR="${LOCALBASE}/lib" \
X VTK_INC_DIR="${LOCALBASE}/include/vtk-5.0" \
X VTK_LIB_DIR="${LOCALBASE}/lib/vtk-5.0" \
X LOCALBASE="${LOCALBASE}"
X
XOPTIONS= FLAT_FLUID "Build flat_fluid (needs math/atlas, long build)" off
X
XSUB_FILES= pkg-message caret.cshrc caret.profile caret.1
X
XPKGMESSAGE= ${WRKDIR}/pkg-message
X
XMAN1= caret.1
X
X.include <bsd.port.pre.mk>
X
X.if !defined(PACKAGE_BUILDING) && \
X !exists(${DISTDIR}/${PORTNAME}_source.v${PORTVERSION}${EXTRACT_SUFX})
Xpre-everything::
X @${PRINTF} "\nPlease register at http://brainmap.wustl.edu/resources/caretnew.html in order to download the source code ${PORTNAME}_source.v${PORTVERSION}${EXTRACT_SUFX} and place it in ${DISTDIR}.\n\n" | ${FMT}
X @${FALSE}
X.endif
X
Xpre-fetch:
X.if !exists(${LOCALBASE}/lib/libvtkMPEG2Encode.so.5)
X @${PRINTF} "\n${LOCALBASE}/lib/libvtkMPEG2Encode.so.5 not found.\nYou must build math/vtk5 with the VTKMPEG2 option enabled. Note that installing multimedia/vtkmpeg2encode *after* vtk5 is installed will not suffice. The math/vtk5 must be compiled with the VTKMPEG2 option on to enable the mpeg2 encoder functionality.\n\nThe VTKMPEG2 option is off by default due to patent restrictions on MPEG2 code. You are solely responsible for any royalties due resulting from your use of the patented MPEG2 code.\n\n" | ${FMT}
X @${FALSE}
X.endif
X
X.if defined(WITH_FLAT_FLUID)
Xpost-build:
X (cd ${WRKSRC}/flat_fluid; ${MAKE} -f Makefile.FreeBSD)
X.endif
X
Xdo-install:
X ${MKDIR} ${PREFIX}/bin ${DATADIR}
X ${INSTALL_PROGRAM} ${WRKSRC}/caret/caret5 ${PREFIX}/bin
X.for f in command copy_spec edit file_convert map_fmri metric zip_spec
X ${INSTALL_PROGRAM} ${WRKSRC}/caret_${f}/caret_${f} ${PREFIX}/bin
X.endfor
X.if defined(WITH_FLAT_FLUID)
X ${INSTALL_PROGRAM} ${WRKSRC}/flat_fluid/flat_fluid ${PREFIX}/bin
X.endif
X (cd ${WRKDIR}/caret_distfiles && ${COPYTREE_SHARE} \* ${DATADIR})
X ${LN} -s ${DATADIR}/caret_help ${DOCSDIR}
X ${MKDIR} ${PREFIX}/etc/mri
X ${INSTALL_SCRIPT} ${WRKDIR}/caret.cshrc ${PREFIX}/etc/mri
X ${INSTALL_SCRIPT} ${WRKDIR}/caret.profile ${PREFIX}/etc/mri
X ${INSTALL_MAN} ${WRKDIR}/caret.1 ${MAN1PREFIX}/man/man1
X
Xpost-install:
X @${ECHO_CMD}; ${CAT} ${PKGMESSAGE}; ${ECHO_CMD}
X
X.include <bsd.port.post.mk>
END-of-science/caret/Makefile
echo x - science/caret/distinfo
sed 's/^X//' >science/caret/distinfo << 'END-of-science/caret/distinfo'
XMD5 (caret_source.v5.51.zip) = 4bef8b9181d264364e1ba61480321d9b
XSHA256 (caret_source.v5.51.zip) = 0264c32e2d763af9034e5a79129f37dda6a820d2e82d93d6d6014a429a4f385a
XSIZE (caret_source.v5.51.zip) = 3376203
XMD5 (caret_distfiles.v5.51.zip) = 7b844696590a5717d83b53cacf292827
XSHA256 (caret_distfiles.v5.51.zip) = 8c67ec7974605dcae3fdd07270c0020d1241b9a1f6258c9be7ce96cff3fd1159
XSIZE (caret_distfiles.v5.51.zip) = 162307635
END-of-science/caret/distinfo
echo x - science/caret/pkg-descr
sed 's/^X//' >science/caret/pkg-descr << 'END-of-science/caret/pkg-descr'
XCaret (Computerized Anatomical Reconstruction and Editing Toolkit) is
Xdesigned for interactively viewing, manipulating, and analyzing surface
Xreconstructions of the cerebral and cerebellar cortex.
X
XWWW: http://brainmap.wustl.edu/
END-of-science/caret/pkg-descr
echo x - science/caret/pkg-plist
sed 's/^X//' >science/caret/pkg-plist << 'END-of-science/caret/pkg-plist'
Xbin/caret5
Xbin/caret_command
Xbin/caret_copy_spec
Xbin/caret_edit
Xbin/caret_file_convert
Xbin/caret_map_fmri
Xbin/caret_metric
Xbin/caret_zip_spec
Xetc/mri/caret.cshrc
Xetc/mri/caret.profile
X%%DATADIR%%/CONSTRUCT.SPHERE/sphere.0.coord
X%%DATADIR%%/CONSTRUCT.SPHERE/sphere.0.sort
X%%DATADIR%%/CONSTRUCT.SPHERE/sphere.0.spec
X%%DATADIR%%/CONSTRUCT.SPHERE/sphere.1.coord
X%%DATADIR%%/CONSTRUCT.SPHERE/sphere.1.sort
X%%DATADIR%%/CONSTRUCT.SPHERE/sphere.1.spec
X%%DATADIR%%/CONSTRUCT.SPHERE/sphere.1.topo
X%%DATADIR%%/CONSTRUCT.SPHERE/sphere.2.coord
X%%DATADIR%%/CONSTRUCT.SPHERE/sphere.2.sort
X%%DATADIR%%/CONSTRUCT.SPHERE/sphere.2.spec
X%%DATADIR%%/CONSTRUCT.SPHERE/sphere.2.topo
X%%DATADIR%%/CONSTRUCT.SPHERE/sphere.3.coord
X%%DATADIR%%/CONSTRUCT.SPHERE/sphere.3.sort
X%%DATADIR%%/CONSTRUCT.SPHERE/sphere.3.spec
X%%DATADIR%%/CONSTRUCT.SPHERE/sphere.3.topo
X%%DATADIR%%/CONSTRUCT.SPHERE/sphere.4.coord
X%%DATADIR%%/CONSTRUCT.SPHERE/sphere.4.sort
X%%DATADIR%%/CONSTRUCT.SPHERE/sphere.4.spec
X%%DATADIR%%/CONSTRUCT.SPHERE/sphere.4.topo
X%%DATADIR%%/CONSTRUCT.SPHERE/sphere.5.coord
X%%DATADIR%%/CONSTRUCT.SPHERE/sphere.5.sort
X%%DATADIR%%/CONSTRUCT.SPHERE/sphere.5.spec
X%%DATADIR%%/CONSTRUCT.SPHERE/sphere.5.topo
X%%DATADIR%%/CONSTRUCT.SPHERE/sphere.6.coord
X%%DATADIR%%/CONSTRUCT.SPHERE/sphere.6.sort
X%%DATADIR%%/CONSTRUCT.SPHERE/sphere.6.spec
X%%DATADIR%%/CONSTRUCT.SPHERE/sphere.6.topo
X%%DATADIR%%/CONSTRUCT.SPHERE/sphere.v5.0.spec
X%%DATADIR%%/CONSTRUCT.SPHERE/sphere.v5.1.spec
X%%DATADIR%%/CONSTRUCT.SPHERE/sphere.v5.2.spec
X%%DATADIR%%/CONSTRUCT.SPHERE/sphere.v5.3.spec
X%%DATADIR%%/CONSTRUCT.SPHERE/sphere.v5.4.spec
X%%DATADIR%%/CONSTRUCT.SPHERE/sphere.v5.5.spec
X%%DATADIR%%/CONSTRUCT.SPHERE/sphere.v5.6.spec
X%%DATADIR%%/REGISTER.SPHERE/OLDsphere.5.topo
X%%DATADIR%%/REGISTER.SPHERE/crossovers.metric
X%%DATADIR%%/REGISTER.SPHERE/old.sphere.3.coord
X%%DATADIR%%/REGISTER.SPHERE/old.sphere.4.coord
X%%DATADIR%%/REGISTER.SPHERE/old.sphere.5.coord
X%%DATADIR%%/REGISTER.SPHERE/sphere.0.coord
X%%DATADIR%%/REGISTER.SPHERE/sphere.0.sort
X%%DATADIR%%/REGISTER.SPHERE/sphere.0.spec
X%%DATADIR%%/REGISTER.SPHERE/sphere.1.coord
X%%DATADIR%%/REGISTER.SPHERE/sphere.1.sort
X%%DATADIR%%/REGISTER.SPHERE/sphere.1.spec
X%%DATADIR%%/REGISTER.SPHERE/sphere.1.topo
X%%DATADIR%%/REGISTER.SPHERE/sphere.2.coord
X%%DATADIR%%/REGISTER.SPHERE/sphere.2.sort
X%%DATADIR%%/REGISTER.SPHERE/sphere.2.spec
X%%DATADIR%%/REGISTER.SPHERE/sphere.2.topo
X%%DATADIR%%/REGISTER.SPHERE/sphere.3.coord
X%%DATADIR%%/REGISTER.SPHERE/sphere.3.sort
X%%DATADIR%%/REGISTER.SPHERE/sphere.3.spec
X%%DATADIR%%/REGISTER.SPHERE/sphere.3.topo
X%%DATADIR%%/REGISTER.SPHERE/sphere.4.coord
X%%DATADIR%%/REGISTER.SPHERE/sphere.4.sort
X%%DATADIR%%/REGISTER.SPHERE/sphere.4.spec
X%%DATADIR%%/REGISTER.SPHERE/sphere.4.topo
X%%DATADIR%%/REGISTER.SPHERE/sphere.5.coord
X%%DATADIR%%/REGISTER.SPHERE/sphere.5.sort
X%%DATADIR%%/REGISTER.SPHERE/sphere.5.spec
X%%DATADIR%%/REGISTER.SPHERE/sphere.5.topo
X%%DATADIR%%/REGISTER.SPHERE/sphere.6.coord
X%%DATADIR%%/REGISTER.SPHERE/sphere.6.sort
X%%DATADIR%%/REGISTER.SPHERE/sphere.6.spec
X%%DATADIR%%/REGISTER.SPHERE/sphere.6.topo
X%%DATADIR%%/REGISTER.SPHERE/sphere.v5.0.spec
X%%DATADIR%%/REGISTER.SPHERE/sphere.v5.1.spec
X%%DATADIR%%/REGISTER.SPHERE/sphere.v5.2.spec
X%%DATADIR%%/REGISTER.SPHERE/sphere.v5.3.spec
X%%DATADIR%%/REGISTER.SPHERE/sphere.v5.4.spec
X%%DATADIR%%/REGISTER.SPHERE/sphere.v5.5.spec
X%%DATADIR%%/REGISTER.SPHERE/sphere.v5.6.spec
X%%DATADIR%%/caret5_help/dialogs/Surface_To_Volume_Dialog.html
X%%DATADIR%%/caret5_help/dialogs/display_control_dialog.html
X%%DATADIR%%/caret5_help/dialogs/draw_border_dialog.html
X%%DATADIR%%/caret5_help/dialogs/draw_border_dialog.jpg
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X at dirrm %%DATADIR%%/data_files/segmentation_masks/old
X at dirrm %%DATADIR%%/data_files/segmentation_masks
X at dirrm %%DATADIR%%/data_files/segmentation/images
X at dirrm %%DATADIR%%/data_files/segmentation
X at dirrm %%DATADIR%%/data_files/icons
X at dirrm %%DATADIR%%/data_files/fmri_mapping_files
X at dirrm %%DATADIR%%/data_files/flatten_borders/old
X at dirrm %%DATADIR%%/data_files/flatten_borders
X at dirrm %%DATADIR%%/data_files/flat_registration
X at dirrm %%DATADIR%%/data_files
X at dirrm %%DATADIR%%/caret5_help/tutorials/Caret_Tutorial_5.5_files
X at dirrm %%DATADIR%%/caret5_help/tutorials/Caret_Analysis_5.5_files
X at dirrm %%DATADIR%%/caret5_help/tutorials/Caret_5.5_Tutorial_Segment_files
X at dirrm %%DATADIR%%/caret5_help/tutorials
X at dirrm %%DATADIR%%/caret5_help/toolbars
X at dirrm %%DATADIR%%/caret5_help/statistics
X at dirrm %%DATADIR%%/caret5_help/source_code
X at dirrm %%DATADIR%%/caret5_help/misc
X at dirrm %%DATADIR%%/caret5_help/menus
X at dirrm %%DATADIR%%/caret5_help/installation
X at dirrm %%DATADIR%%/caret5_help/file_formats
X at dirrm %%DATADIR%%/caret5_help/faqs
X at dirrm %%DATADIR%%/caret5_help/dialogs
X at dirrm %%DATADIR%%/caret5_help
X at dirrm %%DATADIR%%/REGISTER.SPHERE
X at dirrm %%DATADIR%%/CONSTRUCT.SPHERE
X at dirrm %%DATADIR%%
X at dirrmtry etc/mri
END-of-science/caret/pkg-plist
exit
>Release-Note:
>Audit-Trail:
>Unformatted:
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