ports/117506: Update science/cdo to latest version

[Sunpoet Po-Chuan Hsieh]

>Number:         117506
>Category:       ports
>Synopsis:       Update science/cdo to latest version
>Confidential:   no
>Severity:       non-critical
>Priority:       low
>Responsible:    freebsd-ports-bugs
>State:          open
>Quarter:        
>Keywords:       
>Date-Required:
>Class:          maintainer-update
>Submitter-Id:   current-users
>Arrival-Date:   Thu Oct 25 18:00:03 UTC 2007
>Closed-Date:
>Last-Modified:
>Originator:     Sunpoet Po-Chuan Hsieh
>Release:        FreeBSD 6.2-STABLE i386
>Organization:
SUNPOET.net
>Environment:
System: FreeBSD IRIS.sunpoet.net 6.2-STABLE FreeBSD 6.2-STABLE #9: Tue Oct 2 02:44:06 CST 2007 sunpoet at IRIS.sunpoet.net:/usr/obj/usr/src/sys/sunpoet i386
	
>Description:
Update CDO to latest version (1.0.9).
	
>How-To-Repeat:
	
>Fix:
diff -ruN --exclude=CVS /usr/ports/science/cdo/Makefile /usr/ports/sunpoet/cdo/Makefile
--- /usr/ports/science/cdo/Makefile	2007-06-29 16:45:19.000000000 +0800
+++ /usr/ports/sunpoet/cdo/Makefile	2007-10-25 16:30:22.000000000 +0800
@@ -7,7 +7,7 @@
 #
 
 PORTNAME=	cdo
-PORTVERSION=	1.0.8
+PORTVERSION=	1.0.9
 CATEGORIES=	science
 MASTER_SITES=	http://www.mpimet.mpg.de/fileadmin/software/cdo/ \
 		http://sunpoet.net/distfiles/
diff -ruN --exclude=CVS /usr/ports/science/cdo/distinfo /usr/ports/sunpoet/cdo/distinfo
--- /usr/ports/science/cdo/distinfo	2007-06-29 16:45:19.000000000 +0800
+++ /usr/ports/sunpoet/cdo/distinfo	2007-10-25 16:30:30.000000000 +0800
@@ -1,3 +1,3 @@
-MD5 (cdo-1.0.8.tar.gz) = 7d6a10374ee844df5882a8c9b3c16feb
-SHA256 (cdo-1.0.8.tar.gz) = 5796a6639f128b3d255cdd65dbfeb91a66c5478a37b7e05bc2d8f9573480a6b4
-SIZE (cdo-1.0.8.tar.gz) = 2372654
+MD5 (cdo-1.0.9.tar.gz) = daec09bb72336a6838f624d56bc57beb
+SHA256 (cdo-1.0.9.tar.gz) = 2d9df55c50caa7e7a8d8245c772b2242b79c4e770c272f78dcf9ba95b380946f
+SIZE (cdo-1.0.9.tar.gz) = 2383922
diff -ruN --exclude=CVS /usr/ports/science/cdo/files/patch-src-cdo_pthread.c /usr/ports/sunpoet/cdo/files/patch-src-cdo_pthread.c
--- /usr/ports/science/cdo/files/patch-src-cdo_pthread.c	2007-06-29 16:45:19.000000000 +0800
+++ /usr/ports/sunpoet/cdo/files/patch-src-cdo_pthread.c	2007-10-26 00:32:12.000000000 +0800
@@ -1,5 +1,5 @@
---- src/cdo_pthread.c.orig	Wed Mar 22 22:04:18 2006
-+++ src/cdo_pthread.c	Fri Jun 29 00:18:34 2007
+--- src/cdo_pthread.c.orig	2007-08-29 17:15:32.000000000 +0800
++++ src/cdo_pthread.c	2007-10-25 16:30:35.000000000 +0800
 @@ -32,8 +32,10 @@
  {
  #if  defined  (HAVE_LIBPTHREAD)
diff -ruN --exclude=CVS /usr/ports/science/cdo/files/patch-src-config.h.in /usr/ports/sunpoet/cdo/files/patch-src-config.h.in
--- /usr/ports/science/cdo/files/patch-src-config.h.in	2007-06-29 16:45:19.000000000 +0800
+++ /usr/ports/sunpoet/cdo/files/patch-src-config.h.in	2007-10-26 00:35:59.000000000 +0800
@@ -1,10 +0,0 @@
---- src/config.h.in.orig	Wed Apr 18 16:24:45 2007
-+++ src/config.h.in	Fri Jun 29 00:18:34 2007
-@@ -107,3 +107,7 @@
- 
- /* Define for large files, on AIX-style hosts. */
- #undef _LARGE_FILES
-+
-+#if defined (HAVE_UNISTD_H)
-+#include <unistd.h>
-+#endif
diff -ruN --exclude=CVS /usr/ports/science/cdo/files/patch-src-pthread_debug.c /usr/ports/sunpoet/cdo/files/patch-src-pthread_debug.c
--- /usr/ports/science/cdo/files/patch-src-pthread_debug.c	2007-06-29 16:45:19.000000000 +0800
+++ /usr/ports/sunpoet/cdo/files/patch-src-pthread_debug.c	2007-10-26 00:36:28.000000000 +0800
@@ -1,5 +1,5 @@
---- src/pthread_debug.c.orig	Mon May 14 14:30:15 2007
-+++ src/pthread_debug.c	Fri Jun 29 00:24:12 2007
+--- src/pthread_debug.c.orig	2007-05-14 14:30:15.000000000 +0800
++++ src/pthread_debug.c	2007-10-25 16:30:35.000000000 +0800
 @@ -77,6 +77,7 @@
  }
  
diff -ruN --exclude=CVS /usr/ports/science/cdo/files/patch-src-pthread_debug.h /usr/ports/sunpoet/cdo/files/patch-src-pthread_debug.h
--- /usr/ports/science/cdo/files/patch-src-pthread_debug.h	2007-06-29 16:45:19.000000000 +0800
+++ /usr/ports/sunpoet/cdo/files/patch-src-pthread_debug.h	2007-10-26 00:36:48.000000000 +0800
@@ -1,5 +1,5 @@
---- src/pthread_debug.h.orig	Wed Feb 15 21:22:38 2006
-+++ src/pthread_debug.h	Fri Jun 29 00:18:34 2007
+--- src/pthread_debug.h.orig	2006-02-15 21:22:38.000000000 +0800
++++ src/pthread_debug.h	2007-10-25 16:30:35.000000000 +0800
 @@ -15,8 +15,10 @@
  void Pthread_cond_wait(const char *caller, pthread_cond_t *cond, pthread_mutex_t *mutex);
	


>Release-Note:
>Audit-Trail:
>Unformatted: