ports/111890: [maintainer update] science/afni: Advanced Functional Neuro Imaging
Jason Bacon
bacon at smithers.neuro.mcw.edu
Thu Apr 19 16:40:15 UTC 2007
>Number: 111890
>Category: ports
>Synopsis: [maintainer update] science/afni: Advanced Functional Neuro Imaging
>Confidential: no
>Severity: non-critical
>Priority: low
>Responsible: freebsd-ports-bugs
>State: open
>Quarter:
>Keywords:
>Date-Required:
>Class: maintainer-update
>Submitter-Id: current-users
>Arrival-Date: Thu Apr 19 16:40:12 GMT 2007
>Closed-Date:
>Last-Modified:
>Originator: Jason Bacon
>Release: FreeBSD 5.4-RELEASE i386
>Organization:
>Environment:
System: FreeBSD smithers.neuro.mcw.edu 5.4-RELEASE FreeBSD 5.4-RELEASE #2: Wed Aug 24 14:54:53 CDT 2005
>Description:
This is a port of AFNI, Analysis of Functional Neuro Imaging. AFNI is
a tool for analyzing 3 dimensional images, especially functional MRI
images used in brain mapping research.
WWW: http://afni.nimh.nih.gov/
-- Jason W. Bacon <bacon at smithers.neuro.mcw.edu>
Generated with FreeBSD Port Tools 0.77
Note: Removed distfile afni_doc.tgz, which is no longer updated with the
rest of the afni distribution.
>How-To-Repeat:
>Fix:
diff -ruN /usr/ports/science/afni/Makefile science/afni/Makefile
--- /usr/ports/science/afni/Makefile Fri Dec 1 08:07:50 2006
+++ science/afni/Makefile Wed Apr 18 18:53:33 2007
@@ -3,7 +3,7 @@
# Date created: 11 Jan 2005
# Whom: bacon at smithers.neuro.mcw.edu
#
-# $FreeBSD: ports/science/afni/Makefile,v 1.9 2006/12/01 14:07:50 laszlof Exp $
+# $FreeBSD$
#
############################################################################
@@ -16,14 +16,14 @@
# Makefile.BSD, which is included in the source distribution.
PORTNAME= afni
-PORTVERSION= 2006.06.30.1332
+PORTVERSION= 2007.04.18.1830
CATEGORIES= science biology graphics
MASTER_SITES= http://www.neuro.mcw.edu/~bacon/Ports/distfiles/AFNI/${PORTVERSION}/ \
http://afni.nimh.nih.gov/pub/dist/tgz/
-DISTFILES= afni_src.tgz afni_doc.tgz afni.1 \
+DISTFILES= afni_src.tgz afni.1 \
TTatlas+tlrc.BRIK.gz TTatlas+tlrc.HEAD CA_EZ_v1.3c-May0806.tgz
DIST_SUBDIR= AFNI-${PORTVERSION}
-EXTRACT_ONLY= afni_src.tgz afni_doc.tgz CA_EZ_v1.3c-May0806.tgz
+EXTRACT_ONLY= afni_src.tgz CA_EZ_v1.3c-May0806.tgz
MAINTAINER= bacon at smithers.neuro.mcw.edu
COMMENT= Advanced Functional Neuro Imaging
@@ -31,12 +31,13 @@
RUN_DEPENDS= cjpeg:${PORTSDIR}/graphics/jpeg \
mpeg_encode:${PORTSDIR}/multimedia/mpeg_encode \
whirlgif:${PORTSDIR}/graphics/whirlgif \
- ppmtogif:${PORTSDIR}/graphics/netpbm
+ ppmtogif:${PORTSDIR}/graphics/netpbm \
+ endian:${PORTSDIR}/sysutils/endian
.include <bsd.port.pre.mk>
.if ${ARCH} == "sparc64"
-BROKEN= Does not compile on sparc64: "undefined reference to `_mcount'"
+BROKEN= Does not compile on sparc64: "undefined reference to '_mcount'"
.endif
USE_GETTEXT= yes
@@ -54,89 +55,58 @@
MAN1= afni.1
-# these need not to be stripped
-SCRIPTS=\
- @2dwarper \
- @4Daverage \
- @AfniOrient2RAImap \
- @AfniOrientSign \
- @Align_Centers \
- @Center_Distance \
- @CheckForAfniDset \
- @CommandGlobb \
- @DoPerRoi.py \
- @DTI_studio_reposition \
- @FromRAI \
- @GetAfniOrient \
- @GetAfniPrefix \
- @GetAfniView \
- @IsoMasks \
- @NoExt \
- @Purify_1D \
- @RenamePanga \
- @SUMA_AlignToExperiment \
- @SUMA_Make_Spec_Caret \
- @SUMA_Make_Spec_FS \
- @SUMA_Make_Spec_SF \
- @ToRAI \
- @UpdateAfni \
- @VolCenter \
- @align_partial_oblique \
- @auto_align \
- @auto_tlrc \
- @clip_volume \
- @fix_FSsphere \
- @make_stim_file \
- @np \
- @parse_afni_name \
- @parse_name \
- afni_base.py \
- 3dMax \
- suma_change_spec
-
-PLIST_FILES+= ${SCRIPTS:S|^|bin/|}
-
INSTALL_WRKSRC= ${WRKSRC}/BSD
-INSTALL_TEMP= ${WRKSRC}/Backup.BSD
+STAGE= ${WRKSRC}/stage
post-extract:
${CP} -f ${FILESDIR}/Makefile.FreeBSD_PORT ${WRKSRC}
${CP} ${DISTDIR}/${DIST_SUBDIR}/afni.1 ${WRKDIR}
${REINPLACE_CMD} -e 's|%%PREFIX%%|${PREFIX}|g' ${WRKDIR}/afni.1
- @${REINPLACE_CMD} -e 's|/usr/X11R6|${X11BASE}|g' ${WRKSRC}/Makefile.FreeBSD_PORT
-do-install:
- ${MKDIR} ${DATADIR} ${INSTALL_TEMP} \
- ${PREFIX}/lib/afni ${PREFIX}/include/afni
- @${MV} ${INSTALL_WRKSRC}/libf2c.a ${INSTALL_TEMP}
- ${INSTALL_DATA} ${INSTALL_WRKSRC}/*.so ${INSTALL_WRKSRC}/*.a \
- ${PREFIX}/lib/afni
- ${INSTALL_DATA} ${INSTALL_WRKSRC}/*.h \
- ${PREFIX}/include/afni
- ${INSTALL_DATA} ${INSTALL_WRKSRC}/*.jpg ${INSTALL_WRKSRC}/*.txt \
- ${DATADIR}
- @${MV} ${INSTALL_WRKSRC}/*.so \
- ${INSTALL_WRKSRC}/*.a \
- ${INSTALL_WRKSRC}/*.h \
- ${INSTALL_WRKSRC}/*.jpg \
- ${INSTALL_WRKSRC}/*.txt \
- ${INSTALL_WRKSRC}/cjpeg \
+post-build:
+ ${MKDIR} ${STAGE}/bin \
+ ${STAGE}/scripts \
+ ${STAGE}/lib \
+ ${STAGE}/include \
+ ${STAGE}/trash \
+ ${STAGE}/doc \
+ ${STAGE}/share
+ ${MV} ${INSTALL_WRKSRC}/libf2c.a \
+ ${INSTALL_WRKSRC}/cjpeg \
${INSTALL_WRKSRC}/djpeg \
${INSTALL_WRKSRC}/mpeg_encode \
${INSTALL_WRKSRC}/whirlgif \
- ${INSTALL_TEMP}
-.for f in ${SCRIPTS}
- ${INSTALL_SCRIPT} ${INSTALL_WRKSRC}/${f} ${PREFIX}/bin
- @${MV} ${INSTALL_WRKSRC}/${f} ${INSTALL_TEMP}
-.endfor
- ${INSTALL_PROGRAM} ${INSTALL_WRKSRC}/* ${PREFIX}/bin
+ ${STAGE}/trash
+ ${MV} ${INSTALL_WRKSRC}/*.a \
+ ${INSTALL_WRKSRC}/*.so \
+ ${STAGE}/lib
+ ${MV} ${INSTALL_WRKSRC}/*.jpg \
+ ${INSTALL_WRKSRC}/*.txt \
+ ${INSTALL_WRKSRC}/AFNI.*rc \
+ ${STAGE}/share
+ ${MV} ${INSTALL_WRKSRC}/*.h \
+ ${STAGE}/include
+ ${MV} ${INSTALL_WRKSRC}/README* \
+ ${STAGE}/doc
+ for binary in `${FILE} ${INSTALL_WRKSRC}/* | fgrep 'ELF' | ${AWK} -F ':' ' { print $$1 }'` ; do \
+ ${MV} $${binary} ${STAGE}/bin ; \
+ done
+ ${MV} ${INSTALL_WRKSRC}/* \
+ ${STAGE}/scripts
+
+do-install:
+ ${MKDIR} ${DATADIR} ${PREFIX}/lib/afni ${PREFIX}/include/afni
+ ${INSTALL_DATA} ${STAGE}/lib/* ${PREFIX}/lib/afni
+ ${INSTALL_DATA} ${STAGE}/include/* ${PREFIX}/include/afni
+ ${INSTALL_DATA} ${STAGE}/share/* ${DATADIR}
+ ${INSTALL_PROGRAM} ${STAGE}/bin/* ${PREFIX}/bin
+ ${INSTALL_SCRIPT} ${STAGE}/scripts/* ${PREFIX}/bin
${INSTALL_DATA} ${DISTDIR}/${DIST_SUBDIR}/TTatlas* ${DATADIR}
${INSTALL_DATA} ${WRKDIR}/CA_EZ_v1.3c-May0806/* ${DATADIR}
${INSTALL_MAN} ${WRKDIR}/afni.1 ${PREFIX}/man/man1
- @${MV} ${INSTALL_TEMP}/* ${INSTALL_WRKSRC}
.if !defined(NOPORTDOCS)
${MKDIR} ${DOCSDIR}
- ${INSTALL_DATA} ${WRKDIR}/afni_doc/* ${DOCSDIR}
+ ${INSTALL_DATA} ${STAGE}/doc/* ${DOCSDIR}
.endif
post-install:
diff -ruN /usr/ports/science/afni/distinfo science/afni/distinfo
--- /usr/ports/science/afni/distinfo Sun Sep 24 13:24:08 2006
+++ science/afni/distinfo Wed Apr 18 18:33:41 2007
@@ -1,18 +1,15 @@
-MD5 (AFNI-2006.06.30.1332/afni_src.tgz) = 3b496d379b62c57e2d27a1554da5cf29
-SHA256 (AFNI-2006.06.30.1332/afni_src.tgz) = f249e0b8f89a9bae4751d10785acc9e9b71ae179b42853a6c2b1977a9c363c98
-SIZE (AFNI-2006.06.30.1332/afni_src.tgz) = 11178437
-MD5 (AFNI-2006.06.30.1332/afni_doc.tgz) = 3b085de85fc46908652ae287d1cceb38
-SHA256 (AFNI-2006.06.30.1332/afni_doc.tgz) = 28bfcb085d97f63a7e6b753d784908d7f90d9d3ba735d96b18c1e893af4d6cd1
-SIZE (AFNI-2006.06.30.1332/afni_doc.tgz) = 3267095
-MD5 (AFNI-2006.06.30.1332/afni.1) = 7678276880116dcab3324dbf43d0ebf6
-SHA256 (AFNI-2006.06.30.1332/afni.1) = 5598ef2f409797c463bc90d0db44c283357dde9fdaebb943ded70ac8c0aa11c3
-SIZE (AFNI-2006.06.30.1332/afni.1) = 1702
-MD5 (AFNI-2006.06.30.1332/TTatlas+tlrc.BRIK.gz) = f5a107b049bc426af5342565f4e5beee
-SHA256 (AFNI-2006.06.30.1332/TTatlas+tlrc.BRIK.gz) = 0b5b087006e07e05c5f0c8306acaade955924f744457cec0c00844cc2e9e67cd
-SIZE (AFNI-2006.06.30.1332/TTatlas+tlrc.BRIK.gz) = 159912
-MD5 (AFNI-2006.06.30.1332/TTatlas+tlrc.HEAD) = a0ca787a2996d7e66548176808503ac5
-SHA256 (AFNI-2006.06.30.1332/TTatlas+tlrc.HEAD) = 51c3fb158990616f355fea56886fc7c85d80ac96779f5a65a8f69207c2a85919
-SIZE (AFNI-2006.06.30.1332/TTatlas+tlrc.HEAD) = 1750
-MD5 (AFNI-2006.06.30.1332/CA_EZ_v1.3c-May0806.tgz) = dbb2caab5c030c505b306e1526d19150
-SHA256 (AFNI-2006.06.30.1332/CA_EZ_v1.3c-May0806.tgz) = b4e9a6bbb2324c01f70d50e911793e637373040c8cca8e5f17882a146396bc31
-SIZE (AFNI-2006.06.30.1332/CA_EZ_v1.3c-May0806.tgz) = 2652278
+MD5 (AFNI-2007.04.18.1830/afni_src.tgz) = 90ecae8727cadc6172517bc7149be67e
+SHA256 (AFNI-2007.04.18.1830/afni_src.tgz) = 53796de972179f122ab7c557bf29d3511ed113119d04707e16b0766763f49c21
+SIZE (AFNI-2007.04.18.1830/afni_src.tgz) = 11283995
+MD5 (AFNI-2007.04.18.1830/afni.1) = 80cc1f1c6ca0ef59a3032ad63abfbdd5
+SHA256 (AFNI-2007.04.18.1830/afni.1) = 647815326aa676d005fa15de116a6f046b486530aa50a3100d8b29c11da8aaf7
+SIZE (AFNI-2007.04.18.1830/afni.1) = 1702
+MD5 (AFNI-2007.04.18.1830/TTatlas+tlrc.BRIK.gz) = f5a107b049bc426af5342565f4e5beee
+SHA256 (AFNI-2007.04.18.1830/TTatlas+tlrc.BRIK.gz) = 0b5b087006e07e05c5f0c8306acaade955924f744457cec0c00844cc2e9e67cd
+SIZE (AFNI-2007.04.18.1830/TTatlas+tlrc.BRIK.gz) = 159912
+MD5 (AFNI-2007.04.18.1830/TTatlas+tlrc.HEAD) = a0ca787a2996d7e66548176808503ac5
+SHA256 (AFNI-2007.04.18.1830/TTatlas+tlrc.HEAD) = 51c3fb158990616f355fea56886fc7c85d80ac96779f5a65a8f69207c2a85919
+SIZE (AFNI-2007.04.18.1830/TTatlas+tlrc.HEAD) = 1750
+MD5 (AFNI-2007.04.18.1830/CA_EZ_v1.3c-May0806.tgz) = dbb2caab5c030c505b306e1526d19150
+SHA256 (AFNI-2007.04.18.1830/CA_EZ_v1.3c-May0806.tgz) = b4e9a6bbb2324c01f70d50e911793e637373040c8cca8e5f17882a146396bc31
+SIZE (AFNI-2007.04.18.1830/CA_EZ_v1.3c-May0806.tgz) = 2652278
diff -ruN /usr/ports/science/afni/pkg-message science/afni/pkg-message
--- /usr/ports/science/afni/pkg-message Sun Sep 24 13:24:08 2006
+++ science/afni/pkg-message Wed Apr 18 13:57:30 2007
@@ -9,4 +9,9 @@
For AFNI configuration and usage, please visit the AFNI WEB site at
http://afni.nimh.nih.gov.
+
+For large 3dDeconvolve analyses, you may need to increase the shared
+memory limit on your system. For instructions, visit
+
+http://www.neuro.mcw.edu/~bacon/FreeBSD_MRI/
=============================================================================
diff -ruN /usr/ports/science/afni/pkg-plist science/afni/pkg-plist
--- /usr/ports/science/afni/pkg-plist Sun Sep 24 13:24:08 2006
+++ science/afni/pkg-plist Wed Apr 18 19:04:22 2007
@@ -1,3 +1,5 @@
+bin/1dMarry
+bin/1dSEM
bin/1dcat
bin/1ddot
bin/1deval
@@ -22,6 +24,8 @@
bin/3dANOVA
bin/3dANOVA2
bin/3dANOVA3
+bin/3dAcost
+bin/3dAllineate
bin/3dAnatNudge
bin/3dAnhist
bin/3dAttribute
@@ -29,21 +33,25 @@
bin/3dAutobox
bin/3dAutomask
bin/3dBRAIN_VOYAGERtoAFNI
+bin/3dBlurToFWHM
bin/3dBrickStat
bin/3dCM
bin/3dCRUISEtoAFNI
bin/3dClipLevel
bin/3dConvolve
+bin/3dDFT
bin/3dDTeig
bin/3dDWItoDT
bin/3dDeconvolve
bin/3dDeconvolve_f
bin/3dDespike
bin/3dDetrend
+bin/3dEmpty
bin/3dEntropy
bin/3dExtrema
bin/3dFDR
bin/3dFWHM
+bin/3dFWHMx
bin/3dFourier
bin/3dFriedman
bin/3dGetrow
@@ -51,9 +59,11 @@
bin/3dInvFMRI
bin/3dKruskalWallis
bin/3dLRflip
+bin/3dLocalBistat
bin/3dLocalstat
bin/3dMINCtoAFNI
bin/3dMannWhitney
+bin/3dMax
bin/3dMean
bin/3dMedianFilter
bin/3dNLfim
@@ -67,6 +77,7 @@
bin/3dStatClust
bin/3dSurf2Vol
bin/3dSurfMask
+bin/3dSynthesize
bin/3dTSgen
bin/3dTagalign
bin/3dTcat
@@ -124,6 +135,44 @@
bin/3dttest
bin/3dvolreg
bin/4swap
+bin/@2dwarper
+bin/@4Daverage
+bin/@AfniOrient2RAImap
+bin/@AfniOrientSign
+bin/@Align_Centers
+bin/@Center_Distance
+bin/@CheckForAfniDset
+bin/@CommandGlobb
+bin/@DTI_studio_reposition
+bin/@DoPerRoi.py
+bin/@FindAfniDsetPath
+bin/@FromRAI
+bin/@GetAfniID
+bin/@GetAfniOrient
+bin/@GetAfniPrefix
+bin/@GetAfniView
+bin/@IsoMasks
+bin/@NoExt
+bin/@Purify_1D
+bin/@RenamePanga
+bin/@SUMA_AlignToExperiment
+bin/@SUMA_Make_Spec_Caret
+bin/@SUMA_Make_Spec_FS
+bin/@SUMA_Make_Spec_SF
+bin/@ToRAI
+bin/@UpdateAfni
+bin/@VolCenter
+bin/@align_partial_oblique
+bin/@auto_align
+bin/@auto_tlrc
+bin/@clip_volume
+bin/@escape-
+bin/@fix_FSsphere
+bin/@float_fix
+bin/@make_stim_file
+bin/@np
+bin/@parse_afni_name
+bin/@parse_name
bin/AlphaSim
bin/AnalyzeTrace
bin/CompareSurfaces
@@ -133,6 +182,7 @@
bin/CreateIcosahedron
bin/DTIStudioFibertoSegments
bin/Dimon
+bin/DriveSuma
bin/FD2
bin/FSread_annot
bin/Ifile
@@ -150,6 +200,7 @@
bin/ScaleToMap
bin/SurfClust
bin/SurfDsetInfo
+bin/SurfInfo
bin/SurfMeasures
bin/SurfPatch
bin/SurfQual
@@ -161,13 +212,18 @@
bin/abut
bin/adwarp
bin/afni
+bin/afni_base.py
+bin/afni_proc.py
+bin/afni_util.py
bin/afni_vcheck
bin/aiv
+bin/ask_me.py
bin/byteorder
bin/cat_matvec
bin/ccalc
bin/cdf
bin/count
+bin/db_mod.py
bin/dicom_hdr
bin/dicom_to_raw
bin/ent16
@@ -182,6 +238,7 @@
bin/imand
bin/imaver
bin/imcalc
+bin/imcat
bin/imcutup
bin/imdump
bin/immask
@@ -191,14 +248,15 @@
bin/imstat
bin/imupsam
bin/inspec
+bin/make_stim_times.py
bin/mayo_analyze
-bin/mpegtoppm
bin/mritopgm
bin/myget
bin/nicat
bin/nifti1_test
bin/nifti_tool
bin/nsize
+bin/option_list.py
bin/p2t
bin/plugout_drive
bin/plugout_ijk
@@ -215,6 +273,7 @@
bin/sqwave
bin/strblast
bin/suma
+bin/suma_change_spec
bin/tfim
bin/to3d
bin/waver
@@ -252,6 +311,7 @@
lib/afni/model_constant.so
lib/afni/model_convgamma.so
lib/afni/model_convgamma2a.so
+lib/afni/model_demri_3.so
lib/afni/model_diffexp.so
lib/afni/model_diffusion.so
lib/afni/model_gammavar.so
@@ -266,6 +326,7 @@
lib/afni/model_squarewave_apf.so
lib/afni/model_trnglwave_ap.so
lib/afni/model_trnglwave_apf.so
+lib/afni/model_zero.so
lib/afni/plug_3Ddump_V2.so
lib/afni/plug_3ddot.so
lib/afni/plug_3ddup.so
@@ -314,6 +375,8 @@
lib/afni/plug_volreg.so
lib/afni/plug_wavelets.so
lib/afni/plug_zeropad.so
+%%DATADIR%%/AFNI.afnirc
+%%DATADIR%%/AFNI.sumarc
%%DATADIR%%/Dist_Stamp
%%DATADIR%%/Readme_dist
%%DATADIR%%/TT_N27+tlrc.BRIK.gz
@@ -328,11 +391,6 @@
%%DATADIR%%/TT_N27_EZ_ML+tlrc.HEAD
%%DATADIR%%/TTatlas+tlrc.BRIK.gz
%%DATADIR%%/TTatlas+tlrc.HEAD
-%%DATADIR%%/face_erinskinner.jpg
-%%DATADIR%%/face_hang_joon_jo.jpg
-%%DATADIR%%/face_melissah.jpg
-%%DATADIR%%/face_sumabucks.jpg
-%%DATADIR%%/splash_sscc2006.jpg
%%DATADIR%%/face_JimEliassen.jpg
%%DATADIR%%/face_JohannaBaas.jpg
%%DATADIR%%/face_SalloumJB.jpg
@@ -342,6 +400,7 @@
%%DATADIR%%/face_afniman.jpg
%%DATADIR%%/face_agoldman.jpg
%%DATADIR%%/face_ahammett.jpg
+%%DATADIR%%/face_alexandrakofinis.jpg
%%DATADIR%%/face_anewmanetal.jpg
%%DATADIR%%/face_anugent.jpg
%%DATADIR%%/face_asanders.jpg
@@ -366,9 +425,11 @@
%%DATADIR%%/face_cscholl.jpg
%%DATADIR%%/face_csenior.jpg
%%DATADIR%%/face_cwettig.jpg
+%%DATADIR%%/face_daveperlman.jpg
%%DATADIR%%/face_dglen.jpg
%%DATADIR%%/face_einstein.jpg
%%DATADIR%%/face_eli.jpg
+%%DATADIR%%/face_erinskinner.jpg
%%DATADIR%%/face_ernv.jpg
%%DATADIR%%/face_eteoh.jpg
%%DATADIR%%/face_faustalui.jpg
@@ -379,6 +440,9 @@
%%DATADIR%%/face_ggiulietti.jpg
%%DATADIR%%/face_glarkin.jpg
%%DATADIR%%/face_grant.jpg
+%%DATADIR%%/face_guidon.jpg
+%%DATADIR%%/face_hamepark.jpg
+%%DATADIR%%/face_hang_joon_jo.jpg
%%DATADIR%%/face_hanlon.jpg
%%DATADIR%%/face_heekeren.jpg
%%DATADIR%%/face_hoffmangobbini.jpg
@@ -417,6 +481,7 @@
%%DATADIR%%/face_mbeauchamp.jpg
%%DATADIR%%/face_mbelmonte.jpg
%%DATADIR%%/face_megcrew.jpg
+%%DATADIR%%/face_melissah.jpg
%%DATADIR%%/face_mgarolera.jpg
%%DATADIR%%/face_mkenney.jpg
%%DATADIR%%/face_mmaieron.jpg
@@ -450,12 +515,15 @@
%%DATADIR%%/face_sjapee.jpg
%%DATADIR%%/face_skammy.jpg
%%DATADIR%%/face_skapdoskar.jpg
+%%DATADIR%%/face_sknoonan.jpg
%%DATADIR%%/face_smarrett.jpg
%%DATADIR%%/face_ssaad.jpg
%%DATADIR%%/face_ssmall.jpg
%%DATADIR%%/face_steverao.jpg
+%%DATADIR%%/face_sumabucks.jpg
%%DATADIR%%/face_tieshan.jpg
%%DATADIR%%/face_tolkien.jpg
+%%DATADIR%%/face_vdcosta.jpg
%%DATADIR%%/face_vhradil.jpg
%%DATADIR%%/face_vincent1.jpg
%%DATADIR%%/face_vincent2.jpg
@@ -491,63 +559,8 @@
%%DATADIR%%/splash_marsalbor.jpg
%%DATADIR%%/splash_mcw03.jpg
%%DATADIR%%/splash_sscc03.jpg
+%%DATADIR%%/splash_sscc2006.jpg
%%DATADIR%%/splash_vincent.jpg
-%%PORTDOCS%%%%DOCSDIR%%/1dplot.ps
-%%PORTDOCS%%%%DOCSDIR%%/24swap.ps
-%%PORTDOCS%%%%DOCSDIR%%/2dImReg.ps
-%%PORTDOCS%%%%DOCSDIR%%/2swap.ps
-%%PORTDOCS%%%%DOCSDIR%%/3T_toafni.ps
-%%PORTDOCS%%%%DOCSDIR%%/3dANOVA.ps
-%%PORTDOCS%%%%DOCSDIR%%/3dANOVA2.ps
-%%PORTDOCS%%%%DOCSDIR%%/3dANOVA3.ps
-%%PORTDOCS%%%%DOCSDIR%%/3dDeconvolve.ps
-%%PORTDOCS%%%%DOCSDIR%%/3dExtrema.ps
-%%PORTDOCS%%%%DOCSDIR%%/3dFDR.ps
-%%PORTDOCS%%%%DOCSDIR%%/3dFWHM.ps
-%%PORTDOCS%%%%DOCSDIR%%/3dFriedman.ps
-%%PORTDOCS%%%%DOCSDIR%%/3dIntracranial.ps
-%%PORTDOCS%%%%DOCSDIR%%/3dKruskalWallis.ps
-%%PORTDOCS%%%%DOCSDIR%%/3dMannWhitney.ps
-%%PORTDOCS%%%%DOCSDIR%%/3dNLfim.ps
-%%PORTDOCS%%%%DOCSDIR%%/3dRegAna.ps
-%%PORTDOCS%%%%DOCSDIR%%/3dStatClust.ps
-%%PORTDOCS%%%%DOCSDIR%%/3dTSgen.ps
-%%PORTDOCS%%%%DOCSDIR%%/3dTcat.ps
-%%PORTDOCS%%%%DOCSDIR%%/3dTsmooth.ps
-%%PORTDOCS%%%%DOCSDIR%%/3dWavelets.ps
-%%PORTDOCS%%%%DOCSDIR%%/3dWilcoxon.ps
-%%PORTDOCS%%%%DOCSDIR%%/3daxialize.ps
-%%PORTDOCS%%%%DOCSDIR%%/3dbuc2fim.ps
-%%PORTDOCS%%%%DOCSDIR%%/3dbucket.ps
-%%PORTDOCS%%%%DOCSDIR%%/3dcalc.ps
-%%PORTDOCS%%%%DOCSDIR%%/3dclust.ps
-%%PORTDOCS%%%%DOCSDIR%%/3dcolon.ps
-%%PORTDOCS%%%%DOCSDIR%%/3ddup.ps
-%%PORTDOCS%%%%DOCSDIR%%/3dfim+.ps
-%%PORTDOCS%%%%DOCSDIR%%/3dfim.ps
-%%PORTDOCS%%%%DOCSDIR%%/3dfractionize.ps
-%%PORTDOCS%%%%DOCSDIR%%/3dhistog.ps
-%%PORTDOCS%%%%DOCSDIR%%/3dinfo.ps
-%%PORTDOCS%%%%DOCSDIR%%/3dmaskave.ps
-%%PORTDOCS%%%%DOCSDIR%%/3dmerge.ps
-%%PORTDOCS%%%%DOCSDIR%%/3dnewid.ps
-%%PORTDOCS%%%%DOCSDIR%%/3dnoise.ps
-%%PORTDOCS%%%%DOCSDIR%%/3dnvals.ps
-%%PORTDOCS%%%%DOCSDIR%%/3dpc.ps
-%%PORTDOCS%%%%DOCSDIR%%/3dproject.ps
-%%PORTDOCS%%%%DOCSDIR%%/3drefit.ps
-%%PORTDOCS%%%%DOCSDIR%%/3drotate.ps
-%%PORTDOCS%%%%DOCSDIR%%/3dttest.ps
-%%PORTDOCS%%%%DOCSDIR%%/3dvolreg.ps
-%%PORTDOCS%%%%DOCSDIR%%/4swap.ps
-%%PORTDOCS%%%%DOCSDIR%%/AFNI.changes.cox
-%%PORTDOCS%%%%DOCSDIR%%/AFNI.changes.rhammett
-%%PORTDOCS%%%%DOCSDIR%%/AFNI.changes.rickr
-%%PORTDOCS%%%%DOCSDIR%%/AlphaSim.ps
-%%PORTDOCS%%%%DOCSDIR%%/AlphaSim_fig.ps
-%%PORTDOCS%%%%DOCSDIR%%/FD2.ps
-%%PORTDOCS%%%%DOCSDIR%%/Nonparametric.ps
-%%PORTDOCS%%%%DOCSDIR%%/README
%%PORTDOCS%%%%DOCSDIR%%/README.Ifile
%%PORTDOCS%%%%DOCSDIR%%/README.attributes
%%PORTDOCS%%%%DOCSDIR%%/README.bzip2
@@ -568,41 +581,6 @@
%%PORTDOCS%%%%DOCSDIR%%/README.volreg
%%PORTDOCS%%%%DOCSDIR%%/README.web
%%PORTDOCS%%%%DOCSDIR%%/README.ziad
-%%PORTDOCS%%%%DOCSDIR%%/RSFgen.ps
-%%PORTDOCS%%%%DOCSDIR%%/Table.ps
-%%PORTDOCS%%%%DOCSDIR%%/abut.ps
-%%PORTDOCS%%%%DOCSDIR%%/adwarp.ps
-%%PORTDOCS%%%%DOCSDIR%%/afni200.ps
-%%PORTDOCS%%%%DOCSDIR%%/afni_aux.ps
-%%PORTDOCS%%%%DOCSDIR%%/afni_plugins.ps
-%%PORTDOCS%%%%DOCSDIR%%/afni_register.ps
-%%PORTDOCS%%%%DOCSDIR%%/buckets.ps
-%%PORTDOCS%%%%DOCSDIR%%/byteorder.ps
-%%PORTDOCS%%%%DOCSDIR%%/ccalc.ps
-%%PORTDOCS%%%%DOCSDIR%%/cdf.ps
-%%PORTDOCS%%%%DOCSDIR%%/count.ps
-%%PORTDOCS%%%%DOCSDIR%%/fim2.ps
-%%PORTDOCS%%%%DOCSDIR%%/float_scan.ps
-%%PORTDOCS%%%%DOCSDIR%%/from3d.ps
-%%PORTDOCS%%%%DOCSDIR%%/ftosh.ps
-%%PORTDOCS%%%%DOCSDIR%%/imand.ps
-%%PORTDOCS%%%%DOCSDIR%%/imaver.ps
-%%PORTDOCS%%%%DOCSDIR%%/imcalc.ps
-%%PORTDOCS%%%%DOCSDIR%%/imdump.ps
-%%PORTDOCS%%%%DOCSDIR%%/immask.ps
-%%PORTDOCS%%%%DOCSDIR%%/imreg.ps
-%%PORTDOCS%%%%DOCSDIR%%/imrotate.ps
-%%PORTDOCS%%%%DOCSDIR%%/imstack.ps
-%%PORTDOCS%%%%DOCSDIR%%/imstat.ps
-%%PORTDOCS%%%%DOCSDIR%%/imupsam.ps
-%%PORTDOCS%%%%DOCSDIR%%/mritopgm.ps
-%%PORTDOCS%%%%DOCSDIR%%/nsize.ps
-%%PORTDOCS%%%%DOCSDIR%%/p2t.ps
-%%PORTDOCS%%%%DOCSDIR%%/sfim.ps
-%%PORTDOCS%%%%DOCSDIR%%/sqwave.ps
-%%PORTDOCS%%%%DOCSDIR%%/tfim.ps
-%%PORTDOCS%%%%DOCSDIR%%/to3d.ps
-%%PORTDOCS%%%%DOCSDIR%%/waver.ps
%%PORTDOCS%%@dirrm %%DOCSDIR%%
@dirrm %%DATADIR%%
@dirrm lib/afni
>Release-Note:
>Audit-Trail:
>Unformatted:
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