ports/108105: building biology/platon fails.
Tsurutani Naoki
turutani at scphys.kyoto-u.ac.jp
Mon Apr 9 08:20:14 UTC 2007
The following reply was made to PR ports/108105; it has been noted by GNATS.
From: Tsurutani Naoki <turutani at scphys.kyoto-u.ac.jp>
To: Stefan Walter <stefan at freebsd.org>
Cc: GNATS <FreeBSD-gnats-submit at freebsd.org>
Subject: Re: ports/108105: building biology/platon fails.
Date: Mon, 09 Apr 2007 17:11:57 +0900
% egrep -v -e '^#' -e '^\ *$' /etc/make.conf
CPUTYPE?=athlon64
NO_CPU_CFLAGS= true # Don't add -march=<cpu> to CFLAGS automatically
CFLAGS= -O2 -fno-strict-aliasing -pipe
NO_BLUETOOTH= # do not build Bluetooth related stuff
NO_I4B= # do not build isdn4bsd package
NO_OPENSSH= true # do not build OpenSSH
SUP_UPDATE= yes
SUP= /usr/bin/csup
SUPFLAGS= -g -L 2
SUPHOST= cvsup3.jp.FreeBSD.org
SUPFILE= /usr/local/etc/stable-supfile
PORTSSUPFILE= /usr/local/etc/ports-supfile
DOCSUPFILE= /usr/local/etc/doc-supfile
DOC_LANG= en_US.ISO8859-1 ja_JP.eucJP
SENDMAIL_MC=/etc/mail/polymer3.mc
SENDMAIL_SUBMIT_MC=/etc/mail/polymer3.submit.mc
SENDMAIL_CFLAGS= -I/usr/local/include/sasl1 -DSASL -D_FFR_UNSAFE_SASL
SENDMAIL_LDFLAGS= -L/usr/local/lib
SENDMAIL_LDADD= -lsasl
NO_WPA_SUPPLICANT_EAPOL=true
X_WINDOW_SYSTEM= xorg
HAVE_MOTIF= yes
MASTER_SITE_OVERRIDE?= \
ftp://ftp4.jp.freebsd.org/pub/FreeBSD/ports/distfiles/${DIST_SUBDIR}/
MASTER_SITE_RINGSERVER= ftp://ring.ip-kyoto.ad.jp/pub/%SUBDIR%/
MASTER_SITE_TEX_CTAN= ftp://ftp.osaka-u.ac.jp/CTAN/%SUBDIR%/
GNOME_DESKTOP_VERSION= 2
RUBY_DEFAULT_VER=1.8
WITH_APACHE2=1
APACHE_PORT=www/apache22
WITH_MOZILLA=firefox
KERNCONF=POLYMER
WITH_JPMAN=1
WITH_GECKO=firefox thunderbird
PERL_ARCH=mach
NOPERL=yes
NO_PERL=yes
NO_PERL_WRAPPER=yes
PERL_VER=5.8.8
PERL_VERSION=5.8.8
And here are all the logs after *removing* /etc/make.conf:
% cd /usr/ports/biology/platon/
% make
===> Vulnerability check disabled, database not found
===> Extracting for platon-2007.01.09
===> Patching for platon-2007.01.09
(cd /usr/ports/biology/platon/work/platon ; /usr/bin/gunzip -f platon.f.Z xdrvr.c.gz)
/bin/cp /usr/ports/biology/platon/files/Makefile
/usr/ports/biology/platon/work/platon/Makefile
/usr/bin/sed -i.bak -e "s+%%X11BASE%%+/usr/X11R6+"
/usr/ports/biology/platon/work/platon/Makefile
===> platon-2007.01.09 depends on executable in : gfortran42 - found
===> platon-2007.01.09 depends on shared library: X11.6 - found
===> Configuring for platon-2007.01.09
===> Building for platon-2007.01.09
gfortran42 -O -c platon.f
platon.f:4562.72:
ASSIGN 50 TO LRET
1
Warning: Obsolete: ASSIGN statement at (1)
platon.f:4594.72:
ASSIGN 220 TO LRET
1
Warning: Obsolete: ASSIGN statement at (1)
platon.f:4630.15:
GOTO LRET, (50, 220)
1
Warning: Obsolete: Assigned GOTO statement at (1)
platon.f:9050.72:
ASSIGN 140 TO LRET
1
Warning: Obsolete: ASSIGN statement at (1)
platon.f:9054.38:
IF (IVAL .EQ. 1) GOTO LRET, (100, 140)
1
Warning: Obsolete: Assigned GOTO statement at (1)
platon.f:9056.38:
IF (IVAL .EQ. 1) GOTO LRET, (100, 140)
1
Warning: Obsolete: Assigned GOTO statement at (1)
platon.f:9059.42:
IF (NCN(NRT) .LT. 2) GOTO LRET, (100, 140)
1
Warning: Obsolete: Assigned GOTO statement at (1)
platon.f:9062.51:
IF (NCN(NRT) .GT. IPR(159)) GOTO LRET, (100, 140)
1
Warning: Obsolete: Assigned GOTO statement at (1)
platon.f:9064.55:
IF (IATPR(IEN(NO1 + 1)) .GT. 4) GOTO LRET, (100, 140)
1
Warning: Obsolete: Assigned GOTO statement at (1)
platon.f:9066.72:
ASSIGN 100 TO LRET
1
Warning: Obsolete: ASSIGN statement at (1)
platon.f:47284.72:
ASSIGN 250 TO IERR
1
Warning: Obsolete: ASSIGN statement at (1)
platon.f:47296.72:
ASSIGN 250 TO IERR
1
Warning: Obsolete: ASSIGN statement at (1)
platon.f:47298.72:
ASSIGN 240 TO IERR
1
Warning: Obsolete: ASSIGN statement at (1)
platon.f:47306.72:
ASSIGN 250 TO IERR
1
Warning: Obsolete: ASSIGN statement at (1)
platon.f:47311.72:
ASSIGN 240 TO IERR
1
Warning: Obsolete: ASSIGN statement at (1)
platon.f:47314.17:
230 GOTO IERR, (250, 240)
1
Warning: Obsolete: Assigned GOTO statement at (1)
platon.f:61881.72:
ASSIGN 30 TO LRET
1
Warning: Obsolete: ASSIGN statement at (1)
platon.f:62134.33:
IF (IT .EQ. 0) GOTO LRET, (30, 120)
1
Warning: Obsolete: Assigned GOTO statement at (1)
platon.f:62219.15:
GOTO LRET, (30, 120)
1
Warning: Obsolete: Assigned GOTO statement at (1)
platon.f:62230.72:
ASSIGN 120 TO LRET
1
Warning: Obsolete: ASSIGN statement at (1)
platon.f:80250.72:
ASSIGN 1110 TO LRET9
1
Warning: Obsolete: ASSIGN statement at (1)
platon.f:80395.72:
ASSIGN 2675 TO LRET9
1
Warning: Obsolete: ASSIGN statement at (1)
platon.f:80441.72:
ASSIGN 2675 TO LRET9
1
Warning: Obsolete: ASSIGN statement at (1)
platon.f:80446.58:
IF (JB .GT. 60 .OR. LINE(JB:JB) .EQ. ' ') GOTO LRET9, (2675, 1110)
1
Warning: Obsolete: Assigned GOTO statement at (1)
cc -O2 -fno-strict-aliasing -pipe -I/usr/X11R6/include -c xdrvr.c
gfortran42 -o platon platon.o xdrvr.o -L/usr/X11R6/lib -lX11
platon.o(.text+0x6c24): In function `setupcc_':
: undefined reference to `signal_'
platon.o(.text+0x1967f): In function `s937_':
: undefined reference to `system_'
platon.o(.text+0x196a6): In function `s937_':
: undefined reference to `system_'
platon.o(.text+0x196b5): In function `s937_':
: undefined reference to `system_'
platon.o(.text+0x196d9): In function `s937_':
: undefined reference to `system_'
platon.o(.text+0x196f4): In function `s937_':
: undefined reference to `system_'
platon.o(.text+0x19b9c): more undefined references to `system_' follow
collect2: ld returned 1 exit status
*** Error code 1
Stop in /usr/ports/biology/platon/work/platon.
*** Error code 1
Stop in /usr/ports/biology/platon.
More information about the freebsd-ports-bugs
mailing list