ports/103318: maintainer update

Jason Bacon bacon at smithers.neuro.mcw.edu
Sun Sep 17 03:20:11 UTC 2006


>Number:         103318
>Category:       ports
>Synopsis:       maintainer update
>Confidential:   no
>Severity:       serious
>Priority:       high
>Responsible:    freebsd-ports-bugs
>State:          open
>Quarter:        
>Keywords:       
>Date-Required:
>Class:          maintainer-update
>Submitter-Id:   current-users
>Arrival-Date:   Sun Sep 17 03:20:10 GMT 2006
>Closed-Date:
>Last-Modified:
>Originator:     Jason Bacon
>Release:        FreeBSD 5.4-RELEASE i386
>Organization:
Medical College of Wisconsin
>Environment:
System: FreeBSD smithers.neuro.mcw.edu 5.4-RELEASE FreeBSD 5.4-RELEASE #2: Wed Aug 24 14:54:53 CDT 2005 bacon at clone.neuro.mcw.edu:/usr/obj/usr/src/sys/clone i386

>Description:
	The current afni port has a serious flaw that will cause plugins
	to be unusable unless PREFIX is altered, so that the plugins
	are installed in their own directory.  AFNI assumes that all .so
	files in the directory pointed to by AFNI_PLUGINPATH are plugins.
	Hence, most users, who simply run "make install", will find
	AFNI unusable when installed from the port.
	This update corrects the problem by installing plugins into
	${PREFIX}/lib/afni instead of ${PREFIX}/lib.  It also updates the
	AFNI version, and contains a number of other enhancements.


diff -ruN afni.old/Makefile Ports/science/afni/Makefile
--- afni.old/Makefile	Thu Jul  6 16:57:06 2006
+++ Ports/science/afni/Makefile	Sat Sep 16 21:57:16 2006
@@ -3,7 +3,7 @@
 # Date created:        11 Jan 2005
 # Whom:                bacon at smithers.neuro.mcw.edu
 #
-# $FreeBSD: ports/science/afni/Makefile,v 1.7 2006/07/06 21:57:06 linimon Exp $
+# $FreeBSD: ports/science/afni/Makefile,v 1.4 2006/02/13 10:24:18 vd Exp $
 #
 
 ############################################################################
@@ -16,14 +16,14 @@
 # Makefile.BSD, which is included in the source distribution.
 
 PORTNAME=	afni
-PORTVERSION=	2006.03.21.1314
+PORTVERSION=	2006.06.30.1332
 CATEGORIES=	science biology graphics
-MASTER_SITES=	http://afni.nimh.nih.gov/pub/dist/tgz/ \
-		http://www.neuro.mcw.edu/~bacon/Ports/distfiles/AFNI/${PORTVERSION}/
-DISTFILES=	afni_src.tgz afni_doc.tgz afni.1 Makefile.FreeBSD_PORT \
-		TTatlas+tlrc.BRIK.gz TTatlas+tlrc.HEAD CA_EZ_v1.3b-Mar1506.tgz
+MASTER_SITES=	http://www.neuro.mcw.edu/~bacon/Ports/distfiles/AFNI/${PORTVERSION}/ \
+		http://afni.nimh.nih.gov/pub/dist/tgz/
+DISTFILES=	afni_src.tgz afni_doc.tgz afni.1 \
+		TTatlas+tlrc.BRIK.gz TTatlas+tlrc.HEAD CA_EZ_v1.3c-May0806.tgz
 DIST_SUBDIR=	AFNI-${PORTVERSION}
-EXTRACT_ONLY=	afni_src.tgz afni_doc.tgz CA_EZ_v1.3b-Mar1506.tgz
+EXTRACT_ONLY=	afni_src.tgz afni_doc.tgz CA_EZ_v1.3c-May0806.tgz
 
 MAINTAINER=	bacon at smithers.neuro.mcw.edu
 COMMENT=	Advanced Functional Neuro Imaging
@@ -36,7 +36,7 @@
 .include <bsd.port.pre.mk>
 
 .if ${ARCH} == "sparc64"
-BROKEN=	Does not compile on sparc64: "undefined reference to '_mcount'"
+BROKEN=	Does not compile on sparc64: "undefined reference to `_mcount'"
 .endif
 
 USE_GETTEXT=	yes
@@ -49,8 +49,6 @@
 MAKEFILE=	Makefile.FreeBSD_PORT
 ALL_TARGET=	vastness suma
 
-SUB_FILES=	pkg-message
-
 ###########################################################################
 # Install parameters
 
@@ -66,6 +64,7 @@
 	@Center_Distance \
 	@CheckForAfniDset \
 	@CommandGlobb \
+	@DoPerRoi.py \
 	@DTI_studio_reposition \
 	@FromRAI \
 	@GetAfniOrient \
@@ -76,6 +75,7 @@
 	@Purify_1D \
 	@RenamePanga \
 	@SUMA_AlignToExperiment \
+	@SUMA_Make_Spec_Caret \
 	@SUMA_Make_Spec_FS \
 	@SUMA_Make_Spec_SF \
 	@ToRAI \
@@ -90,6 +90,7 @@
 	@np \
 	@parse_afni_name \
 	@parse_name \
+	afni_base.py \
 	3dMax \
 	suma_change_spec
 
@@ -99,15 +100,18 @@
 INSTALL_TEMP=	${WRKSRC}/Backup.BSD
 
 post-extract:
-	${CP} -f ${DISTDIR}/${DIST_SUBDIR}/Makefile.FreeBSD_PORT ${WRKSRC}
+	${CP} -f ${FILESDIR}/Makefile.FreeBSD_PORT ${WRKSRC}
+	${CP} ${DISTDIR}/${DIST_SUBDIR}/afni.1 ${WRKDIR}
+	${REINPLACE_CMD} -e 's|%%PREFIX%%|${PREFIX}|g' ${WRKDIR}/afni.1
 
 do-install:
-	${MKDIR} ${DATADIR} ${INSTALL_TEMP}
+	${MKDIR} ${DATADIR} ${INSTALL_TEMP} \
+		${PREFIX}/lib/afni ${PREFIX}/include/afni
 	@${MV} ${INSTALL_WRKSRC}/libf2c.a ${INSTALL_TEMP}
 	${INSTALL_DATA} ${INSTALL_WRKSRC}/*.so ${INSTALL_WRKSRC}/*.a \
-		${PREFIX}/lib
+		${PREFIX}/lib/afni
 	${INSTALL_DATA} ${INSTALL_WRKSRC}/*.h \
-		${PREFIX}/include
+		${PREFIX}/include/afni
 	${INSTALL_DATA} ${INSTALL_WRKSRC}/*.jpg ${INSTALL_WRKSRC}/*.txt \
 		${DATADIR}
 	@${MV}	${INSTALL_WRKSRC}/*.so \
@@ -126,8 +130,8 @@
 .endfor
 	${INSTALL_PROGRAM} ${INSTALL_WRKSRC}/* ${PREFIX}/bin
 	${INSTALL_DATA} ${DISTDIR}/${DIST_SUBDIR}/TTatlas* ${DATADIR}
-	${INSTALL_DATA} ${WRKDIR}/CA_EZ_v1.3b-Mar1506/* ${DATADIR}
-	${INSTALL_MAN} ${DISTDIR}/${DIST_SUBDIR}/afni.1 ${PREFIX}/man/man1
+	${INSTALL_DATA} ${WRKDIR}/CA_EZ_v1.3c-May0806/* ${DATADIR}
+	${INSTALL_MAN} ${WRKDIR}/afni.1 ${PREFIX}/man/man1
 	@${MV} ${INSTALL_TEMP}/* ${INSTALL_WRKSRC}
 .if !defined(NOPORTDOCS)
 	${MKDIR} ${DOCSDIR}
@@ -135,6 +139,6 @@
 .endif
 
 post-install:
-	@${CAT} ${WRKDIR}/pkg-message
+	@${CAT} pkg-message
 
 .include <bsd.port.post.mk>
diff -ruN afni.old/distinfo Ports/science/afni/distinfo
--- afni.old/distinfo	Thu May 25 09:23:50 2006
+++ Ports/science/afni/distinfo	Sat Sep 16 08:21:24 2006
@@ -1,21 +1,18 @@
-MD5 (AFNI-2006.03.21.1314/afni_src.tgz) = 4b66b4951788c36b137d46dc3dcac4bb
-SHA256 (AFNI-2006.03.21.1314/afni_src.tgz) = 688140a767196086a6db522f1b88f2b8d19cf72648ef689a5f74dc4c3975b610
-SIZE (AFNI-2006.03.21.1314/afni_src.tgz) = 10856284
-MD5 (AFNI-2006.03.21.1314/afni_doc.tgz) = 3b085de85fc46908652ae287d1cceb38
-SHA256 (AFNI-2006.03.21.1314/afni_doc.tgz) = 28bfcb085d97f63a7e6b753d784908d7f90d9d3ba735d96b18c1e893af4d6cd1
-SIZE (AFNI-2006.03.21.1314/afni_doc.tgz) = 3267095
-MD5 (AFNI-2006.03.21.1314/afni.1) = 39c9a1a39b207cd957f0f0d5ec220e4e
-SHA256 (AFNI-2006.03.21.1314/afni.1) = f14991934a8b78f2497cd1d0f48b849c1a6debef01c666eafd70993ba63c99da
-SIZE (AFNI-2006.03.21.1314/afni.1) = 1103
-MD5 (AFNI-2006.03.21.1314/Makefile.FreeBSD_PORT) = 77fd9306b8e5c73c555edcf04aeaf562
-SHA256 (AFNI-2006.03.21.1314/Makefile.FreeBSD_PORT) = f29118dbe49cc95de62a6b3ca2b31cfae0017247854d764dc5e0069ed58f589b
-SIZE (AFNI-2006.03.21.1314/Makefile.FreeBSD_PORT) = 3101
-MD5 (AFNI-2006.03.21.1314/TTatlas+tlrc.BRIK.gz) = f5a107b049bc426af5342565f4e5beee
-SHA256 (AFNI-2006.03.21.1314/TTatlas+tlrc.BRIK.gz) = 0b5b087006e07e05c5f0c8306acaade955924f744457cec0c00844cc2e9e67cd
-SIZE (AFNI-2006.03.21.1314/TTatlas+tlrc.BRIK.gz) = 159912
-MD5 (AFNI-2006.03.21.1314/TTatlas+tlrc.HEAD) = a0ca787a2996d7e66548176808503ac5
-SHA256 (AFNI-2006.03.21.1314/TTatlas+tlrc.HEAD) = 51c3fb158990616f355fea56886fc7c85d80ac96779f5a65a8f69207c2a85919
-SIZE (AFNI-2006.03.21.1314/TTatlas+tlrc.HEAD) = 1750
-MD5 (AFNI-2006.03.21.1314/CA_EZ_v1.3b-Mar1506.tgz) = a66e4abb3385878a945351e761d12723
-SHA256 (AFNI-2006.03.21.1314/CA_EZ_v1.3b-Mar1506.tgz) = c9e884370a1580b1101c01f44cc76f81fc0fd64af7796b76762091ee9de4feed
-SIZE (AFNI-2006.03.21.1314/CA_EZ_v1.3b-Mar1506.tgz) = 2645818
+MD5 (AFNI-2006.06.30.1332/afni_src.tgz) = 3b496d379b62c57e2d27a1554da5cf29
+SHA256 (AFNI-2006.06.30.1332/afni_src.tgz) = f249e0b8f89a9bae4751d10785acc9e9b71ae179b42853a6c2b1977a9c363c98
+SIZE (AFNI-2006.06.30.1332/afni_src.tgz) = 11178437
+MD5 (AFNI-2006.06.30.1332/afni_doc.tgz) = 3b085de85fc46908652ae287d1cceb38
+SHA256 (AFNI-2006.06.30.1332/afni_doc.tgz) = 28bfcb085d97f63a7e6b753d784908d7f90d9d3ba735d96b18c1e893af4d6cd1
+SIZE (AFNI-2006.06.30.1332/afni_doc.tgz) = 3267095
+MD5 (AFNI-2006.06.30.1332/afni.1) = 7678276880116dcab3324dbf43d0ebf6
+SHA256 (AFNI-2006.06.30.1332/afni.1) = 5598ef2f409797c463bc90d0db44c283357dde9fdaebb943ded70ac8c0aa11c3
+SIZE (AFNI-2006.06.30.1332/afni.1) = 1702
+MD5 (AFNI-2006.06.30.1332/TTatlas+tlrc.BRIK.gz) = f5a107b049bc426af5342565f4e5beee
+SHA256 (AFNI-2006.06.30.1332/TTatlas+tlrc.BRIK.gz) = 0b5b087006e07e05c5f0c8306acaade955924f744457cec0c00844cc2e9e67cd
+SIZE (AFNI-2006.06.30.1332/TTatlas+tlrc.BRIK.gz) = 159912
+MD5 (AFNI-2006.06.30.1332/TTatlas+tlrc.HEAD) = a0ca787a2996d7e66548176808503ac5
+SHA256 (AFNI-2006.06.30.1332/TTatlas+tlrc.HEAD) = 51c3fb158990616f355fea56886fc7c85d80ac96779f5a65a8f69207c2a85919
+SIZE (AFNI-2006.06.30.1332/TTatlas+tlrc.HEAD) = 1750
+MD5 (AFNI-2006.06.30.1332/CA_EZ_v1.3c-May0806.tgz) = dbb2caab5c030c505b306e1526d19150
+SHA256 (AFNI-2006.06.30.1332/CA_EZ_v1.3c-May0806.tgz) = b4e9a6bbb2324c01f70d50e911793e637373040c8cca8e5f17882a146396bc31
+SIZE (AFNI-2006.06.30.1332/CA_EZ_v1.3c-May0806.tgz) = 2652278
diff -ruN afni.old/files/Makefile.FreeBSD_PORT Ports/science/afni/files/Makefile.FreeBSD_PORT
--- afni.old/files/Makefile.FreeBSD_PORT	Wed Dec 31 18:00:00 1969
+++ Ports/science/afni/files/Makefile.FreeBSD_PORT	Thu May  4 10:40:22 2006
@@ -0,0 +1,108 @@
+##################################################################
+#
+# This Makefile is tested with FreeBSD 5.x
+#
+# Contributed by: 
+#   Jason W. Bacon
+#   Medical College of Wisconsin
+#   bacon at smithers.neuro.mcw.edu
+#
+# Before compiling afni, install the following packages:
+#
+#   open-motif
+# 
+# To compile SUMA you will also need the following packages:
+#
+#   libiconv
+#   gettext
+#   gmake
+#
+#   Note:   SUMA has display problems on FreeBSD 4.8 and below that I 
+#           have not found time to resolve.  I believe they are related
+#           to the version of the GL libraries that ship with 4.x.
+#
+#           SUMA works fine under FreeBSD 4.9 with GeForce drivers installed
+#           and under FreeBSD 5.1.
+#
+#   Note:   The SUMA build process (as of Aug, 2003) requires GNU make,
+#           which is /usr/local/bin/gmake on BSD systems.  
+#           Be sure the MAKE macro below is set to gmake.
+#
+#   Note:   Compilation of netcdf-3.5.0 may fail due to m4's lack of
+#           support for the -B option.  Remove the -B10000 flag from
+#           netcdf-3.5.0/src/configure BEFORE running make to avoid
+#           this error.  ( Or force configure to use gm4 by reversing
+#           the order of "m4 gm4" to "gm4 m4" everywhere in the script }
+#           This problem has been reported to the netcdf development team.
+#           It seems to have been resolved as of the June, 2003 afni
+#           source distribution.
+#
+
+USE_ZLIB = -DHAVE_ZLIB
+LZLIB    = -lz
+
+CC?     = cc
+LD?     = ${CC}
+
+CCDEBS = -DAFNI_DEBUG -DIMSEQ_DEBUG -DDISPLAY_DEBUG -DTHD_DEBUG
+CEXTRA = -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE
+ifeq (${ARCH}, amd64)
+CEXTRA += -DPIC -fPIC
+endif
+ifeq (${ARCH}, ia64)
+CEXTRA += -DPIC -fPIC
+endif
+
+CFLAGS += ${CEXTRA}
+CC     += ${CFLAGS}
+
+CCVOL  = ${CC}
+CCFAST = ${CC} -O3
+CCMIN  = ${CC}
+CCD    = ${CC} ${CCDEBS}
+CCSVD  = ${CC} -O0
+
+IFLAGS = -I. -I/usr/X11R6/include -I/usr/local/include
+LFLAGS = -s -L. -L/usr/X11R6/lib
+
+MAKE   = gmake
+
+PLUGIN_SUFFIX = so
+PLUGIN_LFLAGS = -shared
+PLUGIN_CC     = ${CC}
+PLFLAGS       = -s -rdynamic -L. -L/usr/X11R6/lib
+
+AR     = /usr/bin/ar
+RANLIB = /usr/bin/ranlib
+TAR    = /usr/bin/tar
+MKDIR  = /bin/mkdir
+TAPE   = /dev/sa0
+GZIP   = /bin/gzip
+
+RM = /bin/rm -f
+MV = /bin/mv -f
+CP = /bin/cp -f
+
+LINT = /usr/bin/lint -a -b -u -v -x ${IFLAGS} ${CCDEFS}
+
+INSTALLDIR = ./BSD
+LIBDIR = ${INSTALLDIR}
+
+# for dynamic linking
+
+LLIBS  = -lmri -lXm -lXp -lXpm -lXext -lXmu -lXt -lX11 -lm $(LZLIB)
+
+# vvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvv
+# For suma (NO STATIC LINKING OF GL libs)
+SUMA_INCLUDE_PATH = -I/usr/X11R6/include -I/usr/local/include -I./ -I../ -I../niml/ -Igts/src 
+SUMA_LINK_PATH = -L/usr/lib -L/usr/X11R6/lib -L../
+#use -lGLw if you have libGLw.a or libGLw.so* or 
+#  -lMesaGLw if you have Mesa's version (libMesaGLw*) of libGLw
+SUMA_LINK_LIB = -lXm -lGLw -lGLU -lGL -lXmu -lXp -lXt -lXext -lX11 -lm $(LZLIB)
+SUMA_MAKEFILE_NAME = SUMA_Makefile
+SUMA_BIN_ARCHIVE = SUMA_FreeBSD.tar
+# ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+
+###############################################################
+
+include Makefile.INCLUDE
diff -ruN afni.old/files/pkg-message.in Ports/science/afni/files/pkg-message.in
--- afni.old/files/pkg-message.in	Wed Jan 25 11:34:35 2006
+++ Ports/science/afni/files/pkg-message.in	Wed Dec 31 18:00:00 1969
@@ -1,7 +0,0 @@
-=============================================================================
-
-The environment variable AFNI_PLUGIN_PATH must contain
-%%PREFIX%%/lib:%%PREFIX%%/share/afni
-in order to run AFNI plugins and view splash images.
-
-=============================================================================
diff -ruN afni.old/pkg-descr Ports/science/afni/pkg-descr
--- afni.old/pkg-descr	Wed Jan 25 11:34:35 2006
+++ Ports/science/afni/pkg-descr	Fri Jun  9 14:29:43 2006
@@ -1,4 +1,4 @@
-This is a port of AFNI, Advanced Functional Neuro Imaging.  AFNI is
+This is a port of AFNI, Analysis of Functional Neuro Imaging.  AFNI is
 a tool for analyzing 3 dimensional images, especially functional MRI
 images used in brain mapping research.
 
diff -ruN afni.old/pkg-message Ports/science/afni/pkg-message
--- afni.old/pkg-message	Wed Dec 31 18:00:00 1969
+++ Ports/science/afni/pkg-message	Sat Sep 16 21:54:02 2006
@@ -0,0 +1,12 @@
+=============================================================================
+Run "man afni" for information on setting up your afni environment.
+
+For questions or comments regarding the FreeBSD port, please contact the
+port maintainer: 
+
+bacon at smithers.neuro.mcw.edu
+
+For AFNI configuration and usage, please visit the AFNI WEB site at 
+
+http://afni.nimh.nih.gov.
+=============================================================================
diff -ruN afni.old/pkg-plist Ports/science/afni/pkg-plist
--- afni.old/pkg-plist	Thu May 25 09:23:50 2006
+++ Ports/science/afni/pkg-plist	Sun Sep 10 12:07:24 2006
@@ -125,6 +125,7 @@
 bin/3dvolreg
 bin/4swap
 bin/AlphaSim
+bin/AnalyzeTrace
 bin/CompareSurfaces
 bin/ConvertDset
 bin/ConvertSurface
@@ -148,6 +149,7 @@
 bin/SampBias
 bin/ScaleToMap
 bin/SurfClust
+bin/SurfDsetInfo
 bin/SurfMeasures
 bin/SurfPatch
 bin/SurfQual
@@ -195,7 +197,6 @@
 bin/myget
 bin/nicat
 bin/nifti1_test
-bin/nifti_stats
 bin/nifti_tool
 bin/nsize
 bin/p2t
@@ -218,100 +219,101 @@
 bin/to3d
 bin/waver
 bin/whereami
-include/3ddata.h
-include/afni_environ.h
-include/afni_warp.h
-include/cdflib.h
-include/coxplot.h
-include/cs.h
-include/cs_sort_template.h
-include/editvol.h
-include/eispack.h
-include/f2c.h
-include/killer.h
-include/machdep.h
-include/mcw_glob.h
-include/mcw_malloc.h
-include/mrilib.h
-include/multivector.h
-include/niml.h
-include/tagset.h
-include/thd_compress.h
-include/thd_iochan.h
-include/thd_maker.h
-include/vecmat.h
-include/vol2surf.h
-include/volpack.h
-lib/libSUMA.a
-lib/libcoxplot.a
-lib/libmri.a
-lib/libmrix.a
-lib/libvolpack.a
-lib/model_beta.so
-lib/model_constant.so
-lib/model_convgamma.so
-lib/model_convgamma2a.so
-lib/model_diffexp.so
-lib/model_diffusion.so
-lib/model_gammavar.so
-lib/model_linear.so
-lib/model_michaelis_menton.so
-lib/model_null.so
-lib/model_quadratic.so
-lib/model_sinewave_ap.so
-lib/model_sinewave_apf.so
-lib/model_squarewave_ap.so
-lib/model_squarewave_apf.so
-lib/model_trnglwave_ap.so
-lib/model_trnglwave_apf.so
-lib/plug_3Ddump_V2.so
-lib/plug_3ddot.so
-lib/plug_3ddup.so
-lib/plug_4Ddump.so
-lib/plug_L1fit.so
-lib/plug_betafit.so
-lib/plug_clust.so
-lib/plug_compress.so
-lib/plug_coorder.so
-lib/plug_copy.so
-lib/plug_crender.so
-lib/plug_deconvolve.so
-lib/plug_delay_V2.so
-lib/plug_drawdset.so
-lib/plug_edit.so
-lib/plug_extract.so
-lib/plug_fourier.so
-lib/plug_hemisub.so
-lib/plug_histog.so
-lib/plug_imreg.so
-lib/plug_lsqfit.so
-lib/plug_maskave.so
-lib/plug_maskcalc.so
-lib/plug_maxima.so
-lib/plug_nlfit.so
-lib/plug_notes.so
-lib/plug_nth_dataset.so
-lib/plug_nudge.so
-lib/plug_permtest.so
-lib/plug_power.so
-lib/plug_realtime.so
-lib/plug_rename.so
-lib/plug_render.so
-lib/plug_reorder.so
-lib/plug_retroicor.so
-lib/plug_roiedit.so
-lib/plug_roiplot.so
-lib/plug_scatplot.so
-lib/plug_second_dataset.so
-lib/plug_stats.so
-lib/plug_stavg.so
-lib/plug_tag.so
-lib/plug_threshold.so
-lib/plug_ttget.so
-lib/plug_vol2surf.so
-lib/plug_volreg.so
-lib/plug_wavelets.so
-lib/plug_zeropad.so
+include/afni/3ddata.h
+include/afni/afni_environ.h
+include/afni/afni_warp.h
+include/afni/cdflib.h
+include/afni/coxplot.h
+include/afni/cs.h
+include/afni/cs_sort_template.h
+include/afni/editvol.h
+include/afni/eispack.h
+include/afni/f2c.h
+include/afni/killer.h
+include/afni/machdep.h
+include/afni/mcw_glob.h
+include/afni/mcw_malloc.h
+include/afni/mrilib.h
+include/afni/multivector.h
+include/afni/niml.h
+include/afni/tagset.h
+include/afni/thd_compress.h
+include/afni/thd_iochan.h
+include/afni/thd_maker.h
+include/afni/vecmat.h
+include/afni/vol2surf.h
+include/afni/volpack.h
+lib/afni/libSUMA.a
+lib/afni/libcoxplot.a
+lib/afni/libmri.a
+lib/afni/libmrix.a
+lib/afni/libvolpack.a
+lib/afni/model_beta.so
+lib/afni/model_constant.so
+lib/afni/model_convgamma.so
+lib/afni/model_convgamma2a.so
+lib/afni/model_diffexp.so
+lib/afni/model_diffusion.so
+lib/afni/model_gammavar.so
+lib/afni/model_linear.so
+lib/afni/model_linplusort.so
+lib/afni/model_michaelis_menton.so
+lib/afni/model_null.so
+lib/afni/model_quadratic.so
+lib/afni/model_sinewave_ap.so
+lib/afni/model_sinewave_apf.so
+lib/afni/model_squarewave_ap.so
+lib/afni/model_squarewave_apf.so
+lib/afni/model_trnglwave_ap.so
+lib/afni/model_trnglwave_apf.so
+lib/afni/plug_3Ddump_V2.so
+lib/afni/plug_3ddot.so
+lib/afni/plug_3ddup.so
+lib/afni/plug_4Ddump.so
+lib/afni/plug_L1fit.so
+lib/afni/plug_betafit.so
+lib/afni/plug_clust.so
+lib/afni/plug_compress.so
+lib/afni/plug_coorder.so
+lib/afni/plug_copy.so
+lib/afni/plug_crender.so
+lib/afni/plug_deconvolve.so
+lib/afni/plug_delay_V2.so
+lib/afni/plug_drawdset.so
+lib/afni/plug_edit.so
+lib/afni/plug_extract.so
+lib/afni/plug_fourier.so
+lib/afni/plug_hemisub.so
+lib/afni/plug_histog.so
+lib/afni/plug_imreg.so
+lib/afni/plug_lsqfit.so
+lib/afni/plug_maskave.so
+lib/afni/plug_maskcalc.so
+lib/afni/plug_maxima.so
+lib/afni/plug_nlfit.so
+lib/afni/plug_notes.so
+lib/afni/plug_nth_dataset.so
+lib/afni/plug_nudge.so
+lib/afni/plug_permtest.so
+lib/afni/plug_power.so
+lib/afni/plug_realtime.so
+lib/afni/plug_rename.so
+lib/afni/plug_render.so
+lib/afni/plug_reorder.so
+lib/afni/plug_retroicor.so
+lib/afni/plug_roiedit.so
+lib/afni/plug_roiplot.so
+lib/afni/plug_scatplot.so
+lib/afni/plug_second_dataset.so
+lib/afni/plug_stats.so
+lib/afni/plug_stavg.so
+lib/afni/plug_tag.so
+lib/afni/plug_threshold.so
+lib/afni/plug_ttget.so
+lib/afni/plug_vol2surf.so
+lib/afni/plug_volreg.so
+lib/afni/plug_wavelets.so
+lib/afni/plug_zeropad.so
 %%DATADIR%%/Dist_Stamp
 %%DATADIR%%/Readme_dist
 %%DATADIR%%/TT_N27+tlrc.BRIK.gz
@@ -326,6 +328,11 @@
 %%DATADIR%%/TT_N27_EZ_ML+tlrc.HEAD
 %%DATADIR%%/TTatlas+tlrc.BRIK.gz
 %%DATADIR%%/TTatlas+tlrc.HEAD
+%%DATADIR%%/face_erinskinner.jpg
+%%DATADIR%%/face_hang_joon_jo.jpg
+%%DATADIR%%/face_melissah.jpg
+%%DATADIR%%/face_sumabucks.jpg
+%%DATADIR%%/splash_sscc2006.jpg
 %%DATADIR%%/face_JimEliassen.jpg
 %%DATADIR%%/face_JohannaBaas.jpg
 %%DATADIR%%/face_SalloumJB.jpg
>How-To-Repeat:
>Fix:
>Release-Note:
>Audit-Trail:
>Unformatted:



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