ports/100886: [NEW PORT] science/ghmm: General Hidden Markov Model Library in C
Cheng-Lung Sung
clsung at FreeBSD.org
Wed Jul 26 15:50:17 UTC 2006
>Number: 100886
>Category: ports
>Synopsis: [NEW PORT] science/ghmm: General Hidden Markov Model Library in C
>Confidential: no
>Severity: non-critical
>Priority: low
>Responsible: freebsd-ports-bugs
>State: open
>Quarter:
>Keywords:
>Date-Required:
>Class: change-request
>Submitter-Id: current-users
>Arrival-Date: Wed Jul 26 15:50:15 GMT 2006
>Closed-Date:
>Last-Modified:
>Originator: Cheng-Lung Sung
>Release: FreeBSD 6.1-STABLE i386
>Organization:
FreeBSD @ Taiwan
>Environment:
System: FreeBSD FreeBSD.csie.nctu.edu.tw 6.1-STABLE FreeBSD 6.1-STABLE #9: Thu May 11 14:31:45 CST 2006
>Description:
The General Hidden Markov Model Library (GHMM) is a C library
with additional Python bindings implementing a wide range of
types of Hidden Markov Models and algorithms:
discrete, continous emissions, basic training,
HMM clustering, HMM mixtures.
WWW: http://ghmm.sourceforge.net/
Generated with FreeBSD Port Tools 0.77
>How-To-Repeat:
>Fix:
--- ghmm-0.7.0a.shar begins here ---
# This is a shell archive. Save it in a file, remove anything before
# this line, and then unpack it by entering "sh file". Note, it may
# create directories; files and directories will be owned by you and
# have default permissions.
#
# This archive contains:
#
# ghmm
# ghmm/pkg-descr
# ghmm/Makefile
# ghmm/pkg-plist
# ghmm/distinfo
# ghmm/files
# ghmm/files/patch-ltmain.sh
#
echo c - ghmm
mkdir -p ghmm > /dev/null 2>&1
echo x - ghmm/pkg-descr
sed 's/^X//' >ghmm/pkg-descr << 'END-of-ghmm/pkg-descr'
XThe General Hidden Markov Model Library (GHMM) is a C library
Xwith additional Python bindings implementing a wide range of
Xtypes of Hidden Markov Models and algorithms:
Xdiscrete, continous emissions, basic training,
XHMM clustering, HMM mixtures.
X
XWWW: http://ghmm.sourceforge.net/
END-of-ghmm/pkg-descr
echo x - ghmm/Makefile
sed 's/^X//' >ghmm/Makefile << 'END-of-ghmm/Makefile'
X# New ports collection makefile for: ghmm
X# Date created: 2006-07-26
X# Whom: Cheng-Lung Sung <clsung at FreeBSD.org>
X#
X# $FreeBSD$
X#
X
XPORTNAME= ghmm
XPORTVERSION= 0.7.0a
XCATEGORIES= science math
XMASTER_SITES= ${MASTER_SITE_SOURCEFORGE}
XMASTER_SITE_SUBDIR= ${PORTNAME}
X
XMAINTAINER= clsung at FreeBSD.org
XCOMMENT= General Hidden Markov Model Library in C
X
XGNU_CONFIGURE= yes
XINSTALLS_SHLIB= yes
XWRKSRC= ${WRKDIR}/${PORTNAME}-0.7.0
X
Xpost-patch:
X @${REINPLACE_CMD} 's|tests doc VisualC|tests VisualC|' ${WRKSRC}/configure
X
X.include <bsd.port.mk>
END-of-ghmm/Makefile
echo x - ghmm/pkg-plist
sed 's/^X//' >ghmm/pkg-plist << 'END-of-ghmm/pkg-plist'
X at comment $FreeBSD$
Xbin/probdist
Xbin/cluster
Xbin/scluster
Xbin/smix_hmm
Xbin/ghmm-config
Xinclude/ghmm/ghmm.h
Xinclude/ghmm/foba.h
Xinclude/ghmm/model.h
Xinclude/ghmm/cluster.h
Xinclude/ghmm/scluster.h
Xinclude/ghmm/root_finder.h
Xinclude/ghmm/reestimate.h
Xinclude/ghmm/sequence.h
Xinclude/ghmm/viterbi.h
Xinclude/ghmm/sfoba.h
Xinclude/ghmm/sviterbi.h
Xinclude/ghmm/smodel.h
Xinclude/ghmm/sdmodel.h
Xinclude/ghmm/sdfoba.h
Xinclude/ghmm/sreestimate.h
Xinclude/ghmm/sgenerate.h
Xinclude/ghmm/smixturehmm.h
Xinclude/ghmm/scanner.h
Xinclude/ghmm/gauss_tail.h
Xinclude/ghmm/smap_classify.h
Xinclude/ghmm/kbest.h
Xinclude/ghmm/gradescent.h
Xinclude/ghmm/discrime.h
Xinclude/ghmm/psequence.h
Xinclude/ghmm/pmodel.h
Xinclude/ghmm/linkedlist.h
Xinclude/ghmm/pviterbi.h
Xinclude/ghmm/pviterbi_propagate.h
Xinclude/ghmm/vector.h
Xinclude/ghmm/matrix.h
Xinclude/ghmm/const.h
Xinclude/ghmm/rng.h
Xinclude/ghmm/mes.h
Xinclude/ghmm/randvar.h
Xinclude/ghmm/internal.h
Xlib/libghmm.so.0
Xlib/libghmm.so
Xlib/libghmm.a
X%%DATADIR%%/PHI_001_20.dat
X at dirrmtry %%DATADIR%%
X at dirrmtry include/ghmm
END-of-ghmm/pkg-plist
echo x - ghmm/distinfo
sed 's/^X//' >ghmm/distinfo << 'END-of-ghmm/distinfo'
XMD5 (ghmm-0.7.0a.tar.gz) = 7bbaf9bf6d7e0f7658e0809c2eddb674
XSHA256 (ghmm-0.7.0a.tar.gz) = 93bce7423a1f81da83f457fef7aa3f4190669700eb635f641960f9480797195e
XSIZE (ghmm-0.7.0a.tar.gz) = 756779
END-of-ghmm/distinfo
echo c - ghmm/files
mkdir -p ghmm/files > /dev/null 2>&1
echo x - ghmm/files/patch-ltmain.sh
sed 's/^X//' >ghmm/files/patch-ltmain.sh << 'END-of-ghmm/files/patch-ltmain.sh'
X--- ltmain.sh.orig Thu Oct 13 16:30:04 2005
X+++ ltmain.sh Wed Jul 26 11:29:48 2006
X@@ -5772,10 +5772,12 @@
X fi
X
X # Install the pseudo-library for information purposes.
X+ if /usr/bin/false ; then
X name=`$echo "X$file" | $Xsed -e 's%^.*/%%'`
X instname="$dir/$name"i
X $show "$install_prog $instname $destdir/$name"
X $run eval "$install_prog $instname $destdir/$name" || exit $?
X+ fi
X
X # Maybe install the static library, too.
X test -n "$old_library" && staticlibs="$staticlibs $dir/$old_library"
END-of-ghmm/files/patch-ltmain.sh
exit
--- ghmm-0.7.0a.shar ends here ---
>Release-Note:
>Audit-Trail:
>Unformatted:
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