ports/87275: [maintainer-update] new version of math/jags
Eric van Gyzen
eric at vangyzen.net
Tue Oct 11 19:40:18 UTC 2005
>Number: 87275
>Category: ports
>Synopsis: [maintainer-update] new version of math/jags
>Confidential: no
>Severity: non-critical
>Priority: low
>Responsible: freebsd-ports-bugs
>State: open
>Quarter:
>Keywords:
>Date-Required:
>Class: maintainer-update
>Submitter-Id: current-users
>Arrival-Date: Tue Oct 11 19:40:15 GMT 2005
>Closed-Date:
>Last-Modified:
>Originator: Eric van Gyzen
>Release: FreeBSD 6.0-BETA4 i386
>Organization:
>Environment:
System: N/A
>Description:
new version of math/jags
Note that this depends on my previous PR for a new version of math/libRmath.
Also note that the patches in the files/ directory are no longer
necessary.
>How-To-Repeat:
N/A
>Fix:
Index: jags/Makefile
===================================================================
RCS file: /freebsd/cvsroot/ports/math/jags/Makefile,v
retrieving revision 1.1
diff -u -u -r1.1 Makefile
--- jags/Makefile 27 May 2004 15:18:45 -0000 1.1
+++ jags/Makefile 11 Oct 2005 01:55:50 -0000
@@ -1,12 +1,13 @@
-# Ports collection Makefile for: jags
-# Date created: 21 April 2004
-# Whom: Eric van Gyzen <vangyzen at stat.duke.edu>
+# vim: tabstop=8 softtabstop=0 noexpandtab
+# Ports Makefile for: jags
+# Date created: 21 April 2004
+# Whom: Eric van Gyzen <vangyzen at stat.duke.edu>
#
# $FreeBSD: ports/math/jags/Makefile,v 1.1 2004/05/27 15:18:45 pav Exp $
#
PORTNAME= jags
-PORTVERSION= 0.50
+PORTVERSION= 0.90
CATEGORIES= math
MASTER_SITES= http://www-fis.iarc.fr/~martyn/software/jags/
DISTNAME= ${PORTNAME:U}-${PORTVERSION}
@@ -15,7 +16,7 @@
EXTRACT_ONLY= ${DISTNAME}${EXTRACT_SUFX}
.endif
-MAINTAINER= vangyzen at stat.duke.edu
+MAINTAINER= eric+fbports at vangyzen.net
COMMENT= Just Another Gibbs Sampler
LIB_DEPENDS= Rmath.0:${PORTSDIR}/math/libRmath
@@ -28,8 +29,6 @@
CONFIGURE_ARGS= --with-lapack=-llapack --with-blas=-lblas
.endif
-USE_BISON= yes
-
DIST_SUBDIR= ${PORTNAME}
GNU_CONFIGURE= yes
@@ -37,9 +36,9 @@
post-install:
.if !defined(NOPORTDOCS)
- ${MKDIR} ${DOCSDIR}
+ ${MKDIR} -p ${DOCSDIR}
${INSTALL_DATA} ${DISTDIR}/${DIST_SUBDIR}/manual.pdf ${DOCSDIR}
- ${MKDIR} ${EXAMPLESDIR}
+ ${MKDIR} -p ${EXAMPLESDIR}
( cd ${EXAMPLESDIR}; \
${PAX} -rzf ${DISTDIR}/${DIST_SUBDIR}/bugs-examples.tar.gz \
-s ':^bugs-examples/*::' )
Index: jags/distinfo
===================================================================
RCS file: /freebsd/cvsroot/ports/math/jags/distinfo,v
retrieving revision 1.1
diff -u -u -r1.1 distinfo
--- jags/distinfo 27 May 2004 15:18:45 -0000 1.1
+++ jags/distinfo 8 Oct 2005 01:27:43 -0000
@@ -1,6 +1,6 @@
-MD5 (jags/JAGS-0.50.tar.gz) = 13a068aa43b84f812e476129fbdb03db
-MD5 (jags/bugs-examples.tar.gz) = c5baddf2f29bab79f8a6c7d0b3873727
-MD5 (jags/manual.pdf) = 8cc1b0371872472ea9bd496bfdbd49f4
-SIZE (jags/JAGS-0.50.tar.gz) = 481609
-SIZE (jags/bugs-examples.tar.gz) = 72373
-SIZE (jags/manual.pdf) = 130157
+MD5 (jags/JAGS-0.90.tar.gz) = 6e33e64de3073617867a2c27b7dbfb31
+MD5 (jags/bugs-examples.tar.gz) = e7abd4d3234b2aec868720f6040804f0
+MD5 (jags/manual.pdf) = cbd1068323afc07fd3d76529b4297bac
+SIZE (jags/JAGS-0.90.tar.gz) = 522489
+SIZE (jags/bugs-examples.tar.gz) = 277569
+SIZE (jags/manual.pdf) = 142220
Index: jags/pkg-descr
===================================================================
RCS file: /freebsd/cvsroot/ports/math/jags/pkg-descr,v
retrieving revision 1.1
diff -u -u -r1.1 pkg-descr
--- jags/pkg-descr 27 May 2004 15:18:45 -0000 1.1
+++ jags/pkg-descr 8 Oct 2005 01:30:05 -0000
@@ -1,5 +1,5 @@
-JAGS is Just Another Gibbs Sampler -- a program for Bayesian analysis of
-graphical models via Gibbs Sampling, not wholly unlike classic BUGS.
+JAGS is Just Another Gibbs Sampler -- a program for analysis of
+Bayesian hierarchical models using Gibbs sampling not wholly unlike BUGS.
The functionality of JAGS is based on the BUGS program created by the
MRC Biostatistics Unit (http://www.mrc-bsu.cam.ac.uk/). There is a short
Index: jags/pkg-plist
===================================================================
RCS file: /freebsd/cvsroot/ports/math/jags/pkg-plist,v
retrieving revision 1.1
diff -u -u -r1.1 pkg-plist
--- jags/pkg-plist 27 May 2004 15:18:45 -0000 1.1
+++ jags/pkg-plist 11 Oct 2005 01:57:19 -0000
@@ -1,63 +1,56 @@
bin/jags
include/JAGS/Console.h
include/JAGS/JAGSVersion.h
+include/JAGS/compiler/Compiler.h
+include/JAGS/compiler/ConstantFactory.h
+include/JAGS/compiler/Counter.h
+include/JAGS/compiler/CounterTab.h
+include/JAGS/compiler/LogicalFactory.h
+include/JAGS/compiler/MixtureFactory.h
+include/JAGS/compiler/NodeFactory.h
+include/JAGS/compiler/ParseTree.h
+include/JAGS/compiler/parser.h
+include/JAGS/compiler/parser_extra.h
include/JAGS/distributions/DistDiscrete.h
-include/JAGS/distributions/DistFinite.h
include/JAGS/distributions/DistReal.h
include/JAGS/distributions/DistTab.h
include/JAGS/distributions/Distribution.h
include/JAGS/functions/FuncTab.h
include/JAGS/functions/Function.h
include/JAGS/functions/InverseLinkFunc.h
-include/JAGS/functions/ScalarArgScalarFunc.h
include/JAGS/functions/ScalarFunc.h
include/JAGS/graph/AggNode.h
include/JAGS/graph/ConstantNode.h
include/JAGS/graph/DeterministicNode.h
+include/JAGS/graph/DevianceNode.h
include/JAGS/graph/Graph.h
include/JAGS/graph/GraphMarks.h
include/JAGS/graph/LogicalNode.h
include/JAGS/graph/MixtureNode.h
include/JAGS/graph/Node.h
include/JAGS/graph/NodeError.h
-include/JAGS/graph/OffsetNode.h
+include/JAGS/graph/NodeNameTab.h
include/JAGS/graph/StochasticNode.h
-include/JAGS/graph/SubSetIndex.h
-include/JAGS/graph/SubSetNode.h
include/JAGS/matrix/lapack.h
include/JAGS/matrix/matexp.h
include/JAGS/matrix/matrix.h
-include/JAGS/model/Compiler.h
-include/JAGS/model/Counter.h
-include/JAGS/model/CounterTab.h
-include/JAGS/model/LogicalFactory.h
+include/JAGS/model/BUGSModel.h
include/JAGS/model/Model.h
include/JAGS/model/NodeArray.h
-include/JAGS/model/ParseTree.h
include/JAGS/model/SymTab.h
include/JAGS/model/TraceMonitor.h
-include/JAGS/model/parser.h
-include/JAGS/model/parser_extra.h
-include/JAGS/sampler/ConjugateBeta.h
-include/JAGS/sampler/ConjugateDirichlet.h
include/JAGS/sampler/ConjugateFactory.h
-include/JAGS/sampler/ConjugateGamma.h
-include/JAGS/sampler/ConjugateMNormal.h
-include/JAGS/sampler/ConjugateNormal.h
-include/JAGS/sampler/ConjugateSampler.h
-include/JAGS/sampler/ConjugateWishart.h
+include/JAGS/sampler/DSumFactory.h
include/JAGS/sampler/FiniteFactory.h
-include/JAGS/sampler/FiniteSampler.h
include/JAGS/sampler/GibbsFactory.h
include/JAGS/sampler/GibbsSampler.h
include/JAGS/sampler/Sampler.h
include/JAGS/sampler/SamplerFactory.h
include/JAGS/sampler/SliceFactory.h
-include/JAGS/sampler/SliceSampler.h
+include/JAGS/sampler/Slicer.h
include/JAGS/sarray/Index.h
-include/JAGS/sarray/LeftRangeIterator.h
include/JAGS/sarray/Range.h
-include/JAGS/sarray/RightRangeIterator.h
+include/JAGS/sarray/RangeIterator.h
include/JAGS/sarray/SArray.h
lib/libjags.a
lib/libjags.la
@@ -90,6 +83,7 @@
%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/dyes/dyes-init.R
%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/dyes/dyes.bug
%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/dyes/test1.cmd
+%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/epil/.Rhistory
%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/epil/BT-data.R
%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/epil/ReadMe
%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/epil/bench-test1.R
@@ -111,16 +105,19 @@
%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/equiv/equivmiss-data.R
%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/equiv/test1.cmd
%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/equiv/test2.cmd
-%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/kidney/bench-test1.cmd
+%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/inhaler/inhaler-data.R
+%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/inhaler/inhaler-inits.R
+%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/inhaler/inhaler.bug
+%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/inhaler/inhaler.cmd
+%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/kidney/ReadMe
+%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/kidney/bench-test1.R
+%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/kidney/bench.R
%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/kidney/kidney-data.R
%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/kidney/kidney-init.R
%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/kidney/kidney.bug
-%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/kidney/kidney.bug.new
-%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/kidney/test1.cmd
+%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/kidney/notest1.cmd
%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/leuk/bench-test1.R
-%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/leuk/data-transform.R
%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/leuk/leuk-data.R
-%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/leuk/leuk-data2.R
%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/leuk/leuk-init.R
%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/leuk/leuk-poisson.bug
%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/leuk/leuk-s.dat
@@ -144,8 +141,6 @@
%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/litters/test1.cmd
%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/lsat/ReadMe
%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/lsat/bench-test1.R
-%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/lsat/bench-test2.R
-%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/lsat/lsat-data-transformed.R
%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/lsat/lsat-data.R
%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/lsat/lsat-init.R
%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/lsat/lsat.bug
@@ -154,7 +149,6 @@
%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/lsat/lsat2.bug
%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/lsat/notest2.cmd
%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/lsat/test1.cmd
-%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/lsat/transform-data.R
%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/mice/bench-test1.R
%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/mice/mice-data.R
%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/mice/mice-init.R
@@ -190,11 +184,13 @@
%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/salm/salm.bug
%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/salm/test1.cmd
%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/salm/test2.cmd
-%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/seeds/bench-test1.R
%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/seeds/bench-test2.R
%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/seeds/bench-test3.R
%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/seeds/bench-test4.R
%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/seeds/bench-test5.R
+%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/seeds/jags2.ind
+%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/seeds/jags2.out
+%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/seeds/notest1.cmd
%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/seeds/seeds-data.R
%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/seeds/seeds-init.R
%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/seeds/seeds.bug
@@ -202,7 +198,6 @@
%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/seeds/seedssig.bug
%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/seeds/seedsuni.bug
%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/seeds/seedszro.bug
-%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/seeds/test1.cmd
%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/seeds/test2.cmd
%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/seeds/test3.cmd
%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/seeds/test4.cmd
@@ -212,15 +207,20 @@
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/air/air-data.R
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/air/air-inits.R
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/air/air.bug
-%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/air/test1.cmd
+%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/air/bench-test1.R
+%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/air/bench.R
+%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/air/notest1.cmd
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/alli/alli-data.R
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/alli/alli-inits.R
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/alli/alli.bug
+%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/alli/bench-test1.R
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/alli/test1.cmd
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/asia/asia-data.R
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/asia/asia.bug
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/asia/asia2-data.R
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/asia/asia2.bug
+%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/asia/bench-test1.R
+%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/asia/bench-test2.R
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/asia/test1.cmd
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/asia/test2.cmd
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/beetles/beetles-cloglog.bug
@@ -228,14 +228,23 @@
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/beetles/beetles-inits.R
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/beetles/beetles-logit.bug
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/beetles/beetles-probit.bug
+%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/beetles/bench-test1.R
+%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/beetles/bench-test2.R
+%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/beetles/bench-test3.R
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/beetles/test1.cmd
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/beetles/test2.cmd
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/beetles/test3.cmd
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/biops/ReadMe
+%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/biops/bench-test1.R
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/biops/biops-data.R
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/biops/biops-inits.R
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/biops/biops.bug
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/biops/test1.cmd
+%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/birats/bar.R
+%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/birats/bench-test1.R
+%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/birats/bench-test2.R
+%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/birats/bench-test3.R
+%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/birats/bench-test4.R
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/birats/birats-data.R
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/birats/birats-inits.R
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/birats/birats1.bug
@@ -247,15 +256,19 @@
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/birats/test3.cmd
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/birats/test4.cmd
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/cervix/ReadMe
+%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/cervix/bar
+%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/cervix/baz
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/cervix/cervix-data.R
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/cervix/cervix-inits.R
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/cervix/cervix.bug
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/cervix/test1.cmd
+%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/dugongs/bench-test1.R
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/dugongs/dugongs-data.R
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/dugongs/dugongs-inits.R
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/dugongs/dugongs.bug
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/dugongs/test1.cmd
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/eyes/ReadMe
+%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/eyes/bench-test2.R
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/eyes/eyes-data.R
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/eyes/eyes-inits.R
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/eyes/eyes.bug
@@ -263,17 +276,23 @@
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/eyes/eyes2.bug
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/eyes/notest1.cmd
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/eyes/test2.cmd
+%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/hearts/bench-test1.R
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/hearts/hearts-data.R
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/hearts/hearts-inits.R
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/hearts/hearts.bug
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/hearts/hearts.dat
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/hearts/test1.cmd
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/ice/ReadMe
+%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/ice/bench-test1.R
+%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/ice/bench.R
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/ice/ice-data.R
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/ice/ice-inits.R
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/ice/icear.bug
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/ice/test1.cmd
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/jaw/ReadMe
+%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/jaw/bench-test1.R
+%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/jaw/bench-test2.R
+%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/jaw/bench-test3.R
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/jaw/jaw-constant.bug
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/jaw/jaw-data.R
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/jaw/jaw-inits.R
@@ -283,19 +302,23 @@
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/jaw/test2.cmd
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/jaw/test3.cmd
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/orange/ReadMe
+%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/orange/bench-test1.R
+%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/orange/bench.R
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/orange/mvotree-data.R
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/orange/mvotree-inits.R
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/orange/mvotree.bug
+%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/orange/notest1.cmd
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/orange/orange-data.R
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/orange/orange-inits.R
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/orange/otree.bug
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/orange/otree.dat
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/orange/otree.in
-%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/orange/test1.cmd
+%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/pigs/bench-test1.R
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/pigs/pigs-data.R
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/pigs/pigs-inits.R
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/pigs/pigs.bug
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/pigs/test1.cmd
+%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/schools/bench-test1.R
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/schools/schools-data.R
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/schools/schools-inits.R
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/schools/schools.bug
@@ -303,6 +326,8 @@
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/schools/test.bug
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/schools/test1.cmd
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/stagnant/ReadMe
+%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/stagnant/bench-test3.R
+%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/stagnant/bench-test4.R
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/stagnant/notest1.cmd
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/stagnant/notest2.cmd
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/stagnant/stagnant-data.R
@@ -314,15 +339,6 @@
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/stagnant/stagnant2.bug
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/stagnant/test3.cmd
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/stagnant/test4.cmd
- at dirrm include/JAGS/sarray
- at dirrm include/JAGS/sampler
- at dirrm include/JAGS/model
- at dirrm include/JAGS/matrix
- at dirrm include/JAGS/graph
- at dirrm include/JAGS/functions
- at dirrm include/JAGS/distributions
- at dirrm include/JAGS
-%%PORTDOCS%%@dirrm %%DOCSDIR%%
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/vol2/stagnant
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/vol2/schools
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/vol2/pigs
@@ -352,6 +368,7 @@
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/vol1/line
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/vol1/leuk
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/vol1/kidney
+%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/vol1/inhaler
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/vol1/equiv
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/vol1/epil
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/vol1/dyes
@@ -360,3 +377,13 @@
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/vol1
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/R
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%
+%%PORTDOCS%%@dirrm %%DOCSDIR%%
+ at dirrm include/JAGS/sarray
+ at dirrm include/JAGS/sampler
+ at dirrm include/JAGS/model
+ at dirrm include/JAGS/matrix
+ at dirrm include/JAGS/graph
+ at dirrm include/JAGS/functions
+ at dirrm include/JAGS/distributions
+ at dirrm include/JAGS/compiler
+ at dirrm include/JAGS
>Release-Note:
>Audit-Trail:
>Unformatted:
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