ports/72726: update biology/ncbi-toolkit to 2004.06.16
Choe, Cheng-Dae
whitekid at gmail.com
Fri Oct 15 08:20:26 UTC 2004
>Number: 72726
>Category: ports
>Synopsis: update biology/ncbi-toolkit to 2004.06.16
>Confidential: no
>Severity: non-critical
>Priority: medium
>Responsible: freebsd-ports-bugs
>State: open
>Quarter:
>Keywords:
>Date-Required:
>Class: change-request
>Submitter-Id: current-users
>Arrival-Date: Fri Oct 15 08:20:25 GMT 2004
>Closed-Date:
>Last-Modified:
>Originator: "Choe, Cheng-Dae"
>Release: FreeBSD 5.3-BETA7 i386
>Organization:
>Environment:
System: FreeBSD comdongin.com 5.3-BETA7 FreeBSD 5.3-BETA7 #0: Thu Oct 14 15:47:01 KST 2004 root at comdongin.com:/usr/obj/data/src/sys/CDI i386
>Description:
update biology/ncbi-toolkit ports to 2004.06.16
>How-To-Repeat:
N/A
>Fix:
diff -ruN ncbi-toolkit.orig/Makefile ncbi-toolkit/Makefile
--- ncbi-toolkit.orig/Makefile Thu Nov 13 23:44:58 2003
+++ ncbi-toolkit/Makefile Fri Oct 15 17:07:45 2004
@@ -6,7 +6,7 @@
#
PORTNAME= ncbi-toolkit
-PORTVERSION= 2003.04.21
+PORTVERSION= 2004.06.16
CATEGORIES= biology
MASTER_SITES= ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools/old/${PORTVERSION:S/.//g}/
DISTNAME= ncbi
@@ -22,7 +22,7 @@
DUMMYMAKE= Makefile
DOCDIR= ${PREFIX}/share/doc/${PORTNAME}
-CPIO= cpio --quiet -pdum -R
+CPIO= ${CPIO} --quiet -pdum -R
#
# Thus ends the definitions.
@@ -36,8 +36,8 @@
post-install:
@${MKDIR} ${DATADIR}
- @for file in ${WRKSRC}/data/*; do \
- ${INSTALL_DATA} $$file ${DATADIR}; \
+ @for f in ${WRKSRC}/data/*; do \
+ ${INSTALL_DATA} ${f} ${DATADIR}; \
done
.if !defined(NOPORTDOCS)
@${MKDIR} ${DOCDIR}
diff -ruN ncbi-toolkit.orig/Makefile~ ncbi-toolkit/Makefile~
--- ncbi-toolkit.orig/Makefile~ Wed Oct 13 18:13:51 2004
+++ ncbi-toolkit/Makefile~ Thu Jan 1 09:00:00 1970
@@ -1,50 +0,0 @@
-# New ports collection makefile for: NCBI
-# Date created: 03 April 2000
-# Whom: tonym
-#
-# $FreeBSD: ports/biology/ncbi-toolkit/Makefile,v 1.16 2003/11/13 14:44:58 trevor Exp $
-#
-
-PORTNAME= ncbi-toolkit
-PORTVERSION= 2004.06.16
-CATEGORIES= biology
-MASTER_SITES= ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools/old/${PORTVERSION:S/.//g}/
-DISTNAME= ncbi
-
-MAINTAINER= tonym at biolateral.com.au
-COMMENT= NCBI development toolkit, including BLAST 2 and GenBank/Entrez support
-
-USE_MOTIF= yes
-
-#
-# In the files directory we have:
-#
-
-DUMMYMAKE= Makefile
-DOCDIR= ${PREFIX}/share/doc/${PORTNAME}
-
-CPIO= cpio --quiet -pdum -R
-
-#
-# Thus ends the definitions.
-#
-# Now we need a dummy top level Makefile as NCBI has scripts that need to
-# run from point above ncbi hierachy.
-#
-
-pre-configure:
- @${CP} ${FILESDIR}/${DUMMYMAKE} ${WRKSRC}
-
-post-install:
- @${MKDIR} ${DATADIR}
- @for f in ${WRKSRC}/data/*; do \
- ${INSTALL_DATA} ${f} ${DATADIR}; \
- done
-.if !defined(NOPORTDOCS)
- @${MKDIR} ${DOCDIR}
- @cd ${WRKSRC}/doc && ${FIND} * | \
- ${CPIO} ${SHAREOWN}:${SHAREGRP} ${DOCDIR}
-.endif
- @${SED} -e "s#%%PREFIX%%#${PREFIX}#" ${PKGMESSAGE}
-
-.include <bsd.port.mk>
diff -ruN ncbi-toolkit.orig/distinfo ncbi-toolkit/distinfo
--- ncbi-toolkit.orig/distinfo Mon May 5 21:24:07 2003
+++ ncbi-toolkit/distinfo Thu Oct 14 20:33:23 2004
@@ -1 +1,2 @@
MD5 (ncbi.tar.gz) = 96208e10f92b2163f5dcc3c5cf74dd44
+SIZE (ncbi.tar.gz) = 10164179
diff -ruN ncbi-toolkit.orig/pkg-plist ncbi-toolkit/pkg-plist
--- ncbi-toolkit.orig/pkg-plist Wed Oct 22 18:29:52 2003
+++ ncbi-toolkit/pkg-plist Fri Oct 15 16:40:03 2004
@@ -1,51 +1,3 @@
-%%PORTDOCS%%%%DOCSDIR%%/FAQ.txt
-%%PORTDOCS%%%%DOCSDIR%%/README-qm
-%%PORTDOCS%%%%DOCSDIR%%/README.asn2xml
-%%PORTDOCS%%%%DOCSDIR%%/README.bcl
-%%PORTDOCS%%%%DOCSDIR%%/README.bls
-%%PORTDOCS%%%%DOCSDIR%%/README.fastacmd
-%%PORTDOCS%%%%DOCSDIR%%/README.formatdb
-%%PORTDOCS%%%%DOCSDIR%%/README.imp
-%%PORTDOCS%%%%DOCSDIR%%/README.mbl
-%%PORTDOCS%%%%DOCSDIR%%/README.nbl
-%%PORTDOCS%%%%DOCSDIR%%/README.pbl
-%%PORTDOCS%%%%DOCSDIR%%/README.rps
-%%PORTDOCS%%%%DOCSDIR%%/README.sdk
-%%PORTDOCS%%%%DOCSDIR%%/asn2gb.txt
-%%PORTDOCS%%%%DOCSDIR%%/asn2gph.txt
-%%PORTDOCS%%%%DOCSDIR%%/dispatcher.html
-%%PORTDOCS%%%%DOCSDIR%%/fa2htgs/README
-%%PORTDOCS%%%%DOCSDIR%%/fa2htgs/updateHtgsDoc
-%%PORTDOCS%%%%DOCSDIR%%/firedialog.gif
-%%PORTDOCS%%%%DOCSDIR%%/firewall.html
-%%PORTDOCS%%%%DOCSDIR%%/fwd_check.sh
-%%PORTDOCS%%%%DOCSDIR%%/images/ncbi_sequin.css
-%%PORTDOCS%%%%DOCSDIR%%/images/seqn01.gif
-%%PORTDOCS%%%%DOCSDIR%%/images/seqn02.gif
-%%PORTDOCS%%%%DOCSDIR%%/images/seqn03.gif
-%%PORTDOCS%%%%DOCSDIR%%/images/seqn04.gif
-%%PORTDOCS%%%%DOCSDIR%%/images/seqn05.gif
-%%PORTDOCS%%%%DOCSDIR%%/images/seqn06.gif
-%%PORTDOCS%%%%DOCSDIR%%/images/seqn07.gif
-%%PORTDOCS%%%%DOCSDIR%%/images/seqn08.gif
-%%PORTDOCS%%%%DOCSDIR%%/images/seqn09.gif
-%%PORTDOCS%%%%DOCSDIR%%/images/seqn10.gif
-%%PORTDOCS%%%%DOCSDIR%%/images/seqn11.gif
-%%PORTDOCS%%%%DOCSDIR%%/images/seqn12.gif
-%%PORTDOCS%%%%DOCSDIR%%/images/seqn13.gif
-%%PORTDOCS%%%%DOCSDIR%%/images/seqn14.gif
-%%PORTDOCS%%%%DOCSDIR%%/images/seqn15.gif
-%%PORTDOCS%%%%DOCSDIR%%/images/seqn16.gif
-%%PORTDOCS%%%%DOCSDIR%%/images/seqn17.gif
-%%PORTDOCS%%%%DOCSDIR%%/images/seqn18.gif
-%%PORTDOCS%%%%DOCSDIR%%/images/seqn19.gif
-%%PORTDOCS%%%%DOCSDIR%%/images/seqn20.gif
-%%PORTDOCS%%%%DOCSDIR%%/images/seqn21.gif
-%%PORTDOCS%%%%DOCSDIR%%/images/seqn22.gif
-%%PORTDOCS%%%%DOCSDIR%%/ncbixml.txt
-%%PORTDOCS%%%%DOCSDIR%%/sdk.doc
-%%PORTDOCS%%%%DOCSDIR%%/sequin.htm
-%%PORTDOCS%%%%DOCSDIR%%/tbl2asn.txt
bin/Nentrez
bin/Psequin
bin/asn2ff
@@ -94,56 +46,6 @@
bin/testval
bin/udv
bin/vecscreen
-lib/ncbi/libddvlib.a
-lib/ncbi/libncbi.a
-lib/ncbi/libncbiCacc.a
-lib/ncbi/libncbiNacc.a
-lib/ncbi/libncbiacc.a
-lib/ncbi/libncbicdr.a
-lib/ncbi/libncbicn3d.a
-lib/ncbi/libncbidesk.a
-lib/ncbi/libncbiid1.a
-lib/ncbi/libncbimla.a
-lib/ncbi/libncbimmdb.a
-lib/ncbi/libncbiobj.a
-lib/ncbi/libncbitool.a
-lib/ncbi/libncbitxc2.a
-lib/ncbi/libnetblast.a
-lib/ncbi/libnetcli.a
-lib/ncbi/libnetentr.a
-lib/ncbi/libregexp.a
-lib/ncbi/libvibgif.a
-lib/ncbi/libvibnet.a
-lib/ncbi/libvibrant.a
-include/ncbi/connect/connect_export.h
-include/ncbi/connect/ncbi_ansi_ext.h
-include/ncbi/connect/ncbi_buffer.h
-include/ncbi/connect/ncbi_comm.h
-include/ncbi/connect/ncbi_config.h
-include/ncbi/connect/ncbi_connection.h
-include/ncbi/connect/ncbi_connector.h
-include/ncbi/connect/ncbi_connutil.h
-include/ncbi/connect/ncbi_core.h
-include/ncbi/connect/ncbi_core_c.h
-include/ncbi/connect/ncbi_dispd.h
-include/ncbi/connect/ncbi_file_connector.h
-include/ncbi/connect/ncbi_heapmgr.h
-include/ncbi/connect/ncbi_host_info.h
-include/ncbi/connect/ncbi_host_infop.h
-include/ncbi/connect/ncbi_http_connector.h
-include/ncbi/connect/ncbi_lbsmd.h
-include/ncbi/connect/ncbi_memory_connector.h
-include/ncbi/connect/ncbi_priv.h
-include/ncbi/connect/ncbi_sendmail.h
-include/ncbi/connect/ncbi_server_info.h
-include/ncbi/connect/ncbi_server_infop.h
-include/ncbi/connect/ncbi_service.h
-include/ncbi/connect/ncbi_service_connector.h
-include/ncbi/connect/ncbi_servicep.h
-include/ncbi/connect/ncbi_socket.h
-include/ncbi/connect/ncbi_socket_connector.h
-include/ncbi/connect/ncbi_types.h
-include/ncbi/connect/ncbi_util.h
include/ncbi/FSpCompat.h
include/ncbi/FullPath.h
include/ncbi/MoreCarbonAccessors.h
@@ -180,11 +82,6 @@
include/ncbi/asn2graphic.h
include/ncbi/asn2graphicp.h
include/ncbi/asnacces.h
-include/ncbi/asngbseq.h
-include/ncbi/asntseq.h
-include/ncbi/blast.h
-include/ncbi/blastconcat.h
-include/ncbi/blastconcatdef.h
include/ncbi/asnalign.h
include/ncbi/asnbibli.h
include/ncbi/asnblock.h
@@ -192,6 +89,7 @@
include/ncbi/asnent2.h
include/ncbi/asnfdef.h
include/ncbi/asnfeat.h
+include/ncbi/asngbseq.h
include/ncbi/asngen.h
include/ncbi/asnid0.h
include/ncbi/asnloc.h
@@ -211,9 +109,13 @@
include/ncbi/asnsubmt.h
include/ncbi/asntax1.h
include/ncbi/asntaxon.h
+include/ncbi/asntseq.h
include/ncbi/bandalgn.h
include/ncbi/binary.h
include/ncbi/biosrc.h
+include/ncbi/blast.h
+include/ncbi/blastconcat.h
+include/ncbi/blastconcatdef.h
include/ncbi/blastdef.h
include/ncbi/blastkar.h
include/ncbi/blastpat.h
@@ -247,6 +149,35 @@
include/ncbi/cn3dstyl.h
include/ncbi/cn3dxprt.h
include/ncbi/codon.h
+include/ncbi/connect/connect_export.h
+include/ncbi/connect/ncbi_ansi_ext.h
+include/ncbi/connect/ncbi_buffer.h
+include/ncbi/connect/ncbi_comm.h
+include/ncbi/connect/ncbi_config.h
+include/ncbi/connect/ncbi_connection.h
+include/ncbi/connect/ncbi_connector.h
+include/ncbi/connect/ncbi_connutil.h
+include/ncbi/connect/ncbi_core.h
+include/ncbi/connect/ncbi_core_c.h
+include/ncbi/connect/ncbi_dispd.h
+include/ncbi/connect/ncbi_file_connector.h
+include/ncbi/connect/ncbi_heapmgr.h
+include/ncbi/connect/ncbi_host_info.h
+include/ncbi/connect/ncbi_host_infop.h
+include/ncbi/connect/ncbi_http_connector.h
+include/ncbi/connect/ncbi_lbsmd.h
+include/ncbi/connect/ncbi_memory_connector.h
+include/ncbi/connect/ncbi_priv.h
+include/ncbi/connect/ncbi_sendmail.h
+include/ncbi/connect/ncbi_server_info.h
+include/ncbi/connect/ncbi_server_infop.h
+include/ncbi/connect/ncbi_service.h
+include/ncbi/connect/ncbi_service_connector.h
+include/ncbi/connect/ncbi_servicep.h
+include/ncbi/connect/ncbi_socket.h
+include/ncbi/connect/ncbi_socket_connector.h
+include/ncbi/connect/ncbi_types.h
+include/ncbi/connect/ncbi_util.h
include/ncbi/corematx.h
include/ncbi/db_list.h
include/ncbi/ddvclick.h
@@ -262,9 +193,9 @@
include/ncbi/dotmatrx.h
include/ncbi/dotseq.h
include/ncbi/dotviewer.h
-include/ncbi/dust.h
include/ncbi/drawingp.h
include/ncbi/drawseq.h
+include/ncbi/dust.h
include/ncbi/dvncode.h
include/ncbi/echo_asn.h
include/ncbi/edutil.h
@@ -452,8 +383,8 @@
include/ncbi/pubdesc.h
include/ncbi/puberr.h
include/ncbi/qblastapi.h
-include/ncbi/regex.h
include/ncbi/readdb.h
+include/ncbi/regex.h
include/ncbi/rpsutil.h
include/ncbi/saldist.h
include/ncbi/saled.h
@@ -506,7 +437,6 @@
include/ncbi/suggapi.h
include/ncbi/suggen.h
include/ncbi/suggest.h
-include/ncbi/terr.h
include/ncbi/suggslp.h
include/ncbi/sugmap.h
include/ncbi/sugprefx.h
@@ -517,6 +447,7 @@
include/ncbi/taxon1.h
include/ncbi/taxuerr.h
include/ncbi/taxutil.h
+include/ncbi/terr.h
include/ncbi/tfuns.h
include/ncbi/thrdatd.h
include/ncbi/thrddecl.h
@@ -558,7 +489,6 @@
include/ncbi/vast2mage.h
include/ncbi/vast2pdb.h
include/ncbi/vastlocl.h
-include/ncbi/vsm.h
include/ncbi/vastsrv.h
include/ncbi/vecscnapi.h
include/ncbi/vecscrn.h
@@ -577,12 +507,82 @@
include/ncbi/viewer3d.h
include/ncbi/viewerp.h
include/ncbi/viewmgr.h
+include/ncbi/vsm.h
include/ncbi/vsmfile.h
include/ncbi/vsmpriv.h
include/ncbi/vsmutil.h
include/ncbi/wrpsb.h
include/ncbi/wrpsbtool.h
include/ncbi/xmlblast.h
+lib/ncbi/libddvlib.a
+lib/ncbi/libncbi.a
+lib/ncbi/libncbiCacc.a
+lib/ncbi/libncbiNacc.a
+lib/ncbi/libncbiacc.a
+lib/ncbi/libncbicdr.a
+lib/ncbi/libncbicn3d.a
+lib/ncbi/libncbidesk.a
+lib/ncbi/libncbiid1.a
+lib/ncbi/libncbimla.a
+lib/ncbi/libncbimmdb.a
+lib/ncbi/libncbiobj.a
+lib/ncbi/libncbitool.a
+lib/ncbi/libncbitxc2.a
+lib/ncbi/libnetblast.a
+lib/ncbi/libnetcli.a
+lib/ncbi/libnetentr.a
+lib/ncbi/libregexp.a
+lib/ncbi/libvibgif.a
+lib/ncbi/libvibnet.a
+lib/ncbi/libvibrant.a
+%%PORTDOCS%%%%DOCSDIR%%/FAQ.txt
+%%PORTDOCS%%%%DOCSDIR%%/README-qm
+%%PORTDOCS%%%%DOCSDIR%%/README.asn2xml
+%%PORTDOCS%%%%DOCSDIR%%/README.bcl
+%%PORTDOCS%%%%DOCSDIR%%/README.bls
+%%PORTDOCS%%%%DOCSDIR%%/README.fastacmd
+%%PORTDOCS%%%%DOCSDIR%%/README.formatdb
+%%PORTDOCS%%%%DOCSDIR%%/README.imp
+%%PORTDOCS%%%%DOCSDIR%%/README.mbl
+%%PORTDOCS%%%%DOCSDIR%%/README.nbl
+%%PORTDOCS%%%%DOCSDIR%%/README.pbl
+%%PORTDOCS%%%%DOCSDIR%%/README.rps
+%%PORTDOCS%%%%DOCSDIR%%/README.sdk
+%%PORTDOCS%%%%DOCSDIR%%/asn2gb.txt
+%%PORTDOCS%%%%DOCSDIR%%/asn2gph.txt
+%%PORTDOCS%%%%DOCSDIR%%/dispatcher.html
+%%PORTDOCS%%%%DOCSDIR%%/fa2htgs/README
+%%PORTDOCS%%%%DOCSDIR%%/fa2htgs/updateHtgsDoc
+%%PORTDOCS%%%%DOCSDIR%%/firedialog.gif
+%%PORTDOCS%%%%DOCSDIR%%/firewall.html
+%%PORTDOCS%%%%DOCSDIR%%/fwd_check.sh
+%%PORTDOCS%%%%DOCSDIR%%/images/ncbi_sequin.css
+%%PORTDOCS%%%%DOCSDIR%%/images/seqn01.gif
+%%PORTDOCS%%%%DOCSDIR%%/images/seqn02.gif
+%%PORTDOCS%%%%DOCSDIR%%/images/seqn03.gif
+%%PORTDOCS%%%%DOCSDIR%%/images/seqn04.gif
+%%PORTDOCS%%%%DOCSDIR%%/images/seqn05.gif
+%%PORTDOCS%%%%DOCSDIR%%/images/seqn06.gif
+%%PORTDOCS%%%%DOCSDIR%%/images/seqn07.gif
+%%PORTDOCS%%%%DOCSDIR%%/images/seqn08.gif
+%%PORTDOCS%%%%DOCSDIR%%/images/seqn09.gif
+%%PORTDOCS%%%%DOCSDIR%%/images/seqn10.gif
+%%PORTDOCS%%%%DOCSDIR%%/images/seqn11.gif
+%%PORTDOCS%%%%DOCSDIR%%/images/seqn12.gif
+%%PORTDOCS%%%%DOCSDIR%%/images/seqn13.gif
+%%PORTDOCS%%%%DOCSDIR%%/images/seqn14.gif
+%%PORTDOCS%%%%DOCSDIR%%/images/seqn15.gif
+%%PORTDOCS%%%%DOCSDIR%%/images/seqn16.gif
+%%PORTDOCS%%%%DOCSDIR%%/images/seqn17.gif
+%%PORTDOCS%%%%DOCSDIR%%/images/seqn18.gif
+%%PORTDOCS%%%%DOCSDIR%%/images/seqn19.gif
+%%PORTDOCS%%%%DOCSDIR%%/images/seqn20.gif
+%%PORTDOCS%%%%DOCSDIR%%/images/seqn21.gif
+%%PORTDOCS%%%%DOCSDIR%%/images/seqn22.gif
+%%PORTDOCS%%%%DOCSDIR%%/ncbixml.txt
+%%PORTDOCS%%%%DOCSDIR%%/sdk.doc
+%%PORTDOCS%%%%DOCSDIR%%/sequin.htm
+%%PORTDOCS%%%%DOCSDIR%%/tbl2asn.txt
share/ncbi-toolkit/BLOSUM45
share/ncbi-toolkit/BLOSUM62
share/ncbi-toolkit/BLOSUM80
@@ -628,10 +628,10 @@
share/ncbi-toolkit/sequin.hlp
share/ncbi-toolkit/sgmlbb.ent
share/ncbi-toolkit/taxlist.txt
+ at dirrm share/ncbi-toolkit
+ at dirrm %%PORTDOCS%%%%DOCSDIR%%/images
+ at dirrm %%PORTDOCS%%%%DOCSDIR%%/fa2htgs
+ at dirrm %%PORTDOCS%%%%DOCSDIR%%
+ at dirrm lib/ncbi
@dirrm include/ncbi/connect
@dirrm include/ncbi
- at dirrm lib/ncbi
- at dirrm share/ncbi-toolkit
-%%PORTDOCS%%@dirrm %%DOCSDIR%%/images
-%%PORTDOCS%%@dirrm %%DOCSDIR%%/fa2htgs
-%%PORTDOCS%%@dirrm %%DOCSDIR%%
diff -ruN ncbi-toolkit.orig/pkg-plist~ ncbi-toolkit/pkg-plist~
--- ncbi-toolkit.orig/pkg-plist~ Wed Oct 13 16:50:05 2004
+++ ncbi-toolkit/pkg-plist~ Thu Jan 1 09:00:00 1970
@@ -1,639 +0,0 @@
-bin/Nentrez
-bin/Psequin
-bin/asn2ff
-bin/asn2gb
-bin/asn2xml
-bin/asndhuff
-bin/asntool
-bin/blastall
-bin/blastcl3
-bin/blastclust
-bin/blastpgp
-bin/cdscan
-bin/checksub
-bin/copymat
-bin/ddv
-bin/demo_regexp
-bin/demo_regexp_grep
-bin/dosimple
-bin/entrcmd
-bin/entrez2
-bin/errhdr
-bin/fa2htgs
-bin/fastacmd
-bin/findspl
-bin/fmerge
-bin/formatdb
-bin/getfeat
-bin/getmesh
-bin/getpub
-bin/getseq
-bin/gil2bin
-bin/idfetch
-bin/impala
-bin/indexpub
-bin/makemat
-bin/makeset
-bin/megablast
-bin/ncbisort
-bin/netentcf
-bin/rpsblast
-bin/seedtop
-bin/seqtest
-bin/tbl2asn
-bin/testcore
-bin/testobj
-bin/testval
-bin/udv
-bin/vecscreen
-include/ncbi/FSpCompat.h
-include/ncbi/FullPath.h
-include/ncbi/MoreCarbonAccessors.h
-include/ncbi/MoreFilesExtras.h
-include/ncbi/MoreFilesX.h
-include/ncbi/Optimization.h
-include/ncbi/OptimizationEnd.h
-include/ncbi/PubStructAsn.h
-include/ncbi/a2ferr.h
-include/ncbi/a2ferrdf.h
-include/ncbi/a2fstruc.h
-include/ncbi/aacomp.h
-include/ncbi/accentr.h
-include/ncbi/accid1.h
-include/ncbi/accutils.h
-include/ncbi/actutils.h
-include/ncbi/algorend.h
-include/ncbi/alignloc.h
-include/ncbi/alignmgr.h
-include/ncbi/alignmgr2.h
-include/ncbi/alignval.h
-include/ncbi/aliparse.h
-include/ncbi/aliread.h
-include/ncbi/all.h
-include/ncbi/allpub.h
-include/ncbi/apparam.h
-include/ncbi/asn.h
-include/ncbi/asn2ff.h
-include/ncbi/asn2ff6.h
-include/ncbi/asn2ffg.h
-include/ncbi/asn2ffp.h
-include/ncbi/asn2gnbk.h
-include/ncbi/asn2gnbp.h
-include/ncbi/asn2graphic.h
-include/ncbi/asn2graphicp.h
-include/ncbi/asnacces.h
-include/ncbi/asnalign.h
-include/ncbi/asnbibli.h
-include/ncbi/asnblock.h
-include/ncbi/asncode.h
-include/ncbi/asnent2.h
-include/ncbi/asnfdef.h
-include/ncbi/asnfeat.h
-include/ncbi/asngbseq.h
-include/ncbi/asngen.h
-include/ncbi/asnid0.h
-include/ncbi/asnloc.h
-include/ncbi/asnmdrs.h
-include/ncbi/asnmedli.h
-include/ncbi/asnmim.h
-include/ncbi/asnmime.h
-include/ncbi/asnmla.h
-include/ncbi/asnneten.h
-include/ncbi/asnproj.h
-include/ncbi/asnprt.h
-include/ncbi/asnpub.h
-include/ncbi/asnpubme.h
-include/ncbi/asnres.h
-include/ncbi/asnseq.h
-include/ncbi/asnsset.h
-include/ncbi/asnsubmt.h
-include/ncbi/asntax1.h
-include/ncbi/asntaxon.h
-include/ncbi/asntseq.h
-include/ncbi/bandalgn.h
-include/ncbi/binary.h
-include/ncbi/biosrc.h
-include/ncbi/blast.h
-include/ncbi/blastconcat.h
-include/ncbi/blastconcatdef.h
-include/ncbi/blastdef.h
-include/ncbi/blastkar.h
-include/ncbi/blastpat.h
-include/ncbi/blastpri.h
-include/ncbi/blocks.h
-include/ncbi/blstspc.h
-include/ncbi/blstxml.h
-include/ncbi/bspview.h
-include/ncbi/bxmlobj.h
-include/ncbi/casn.h
-include/ncbi/cdconfig.h
-include/ncbi/cdd.h
-include/ncbi/cddposutil.h
-include/ncbi/cddsrv.h
-include/ncbi/cddutil.h
-include/ncbi/cdentrez.h
-include/ncbi/cdnewlib.h
-include/ncbi/cdrgn.h
-include/ncbi/cdrom.h
-include/ncbi/cdromlib.h
-include/ncbi/cn3d.h
-include/ncbi/cn3dentr.h
-include/ncbi/cn3dmain.h
-include/ncbi/cn3dmesh.h
-include/ncbi/cn3dmodl.h
-include/ncbi/cn3dmsel.h
-include/ncbi/cn3dmsg.h
-include/ncbi/cn3dopen.h
-include/ncbi/cn3dsave.h
-include/ncbi/cn3dshim.h
-include/ncbi/cn3dstyl.h
-include/ncbi/cn3dxprt.h
-include/ncbi/codon.h
-include/ncbi/connect/connect_export.h
-include/ncbi/connect/ncbi_ansi_ext.h
-include/ncbi/connect/ncbi_buffer.h
-include/ncbi/connect/ncbi_comm.h
-include/ncbi/connect/ncbi_config.h
-include/ncbi/connect/ncbi_connection.h
-include/ncbi/connect/ncbi_connector.h
-include/ncbi/connect/ncbi_connutil.h
-include/ncbi/connect/ncbi_core.h
-include/ncbi/connect/ncbi_core_c.h
-include/ncbi/connect/ncbi_dispd.h
-include/ncbi/connect/ncbi_file_connector.h
-include/ncbi/connect/ncbi_heapmgr.h
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-lib/ncbi/libddvlib.a
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-%%PORTDOCS%%%%DOCSDIR%%/FAQ.txt
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-share/ncbi-toolkit/BLOSUM45
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-share/ncbi-toolkit/ContactPotential
-share/ncbi-toolkit/KSat.flt
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- at dirrm share/nls/en_US.US-ASCII
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- at dirrm lib/ncbi
- at dirrm include/ncbi/connect
- at dirrm include/ncbi
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>Audit-Trail:
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