ports/66970: [new port] devel/p5-Algorithm-Cluster

[Cheng-Lung Sung]

>Number:         66970
>Category:       ports
>Synopsis:       [new port] devel/p5-Algorithm-Cluster
>Confidential:   no
>Severity:       non-critical
>Priority:       low
>Responsible:    freebsd-ports-bugs
>State:          open
>Quarter:        
>Keywords:       
>Date-Required:
>Class:          maintainer-update
>Submitter-Id:   current-users
>Arrival-Date:   Fri May 21 00:30:19 PDT 2004
>Closed-Date:
>Last-Modified:
>Originator:     Cheng-Lung Sung
>Release:        FreeBSD 4.9-RELEASE i386
>Organization:
FreeBSD @ Taiwan
>Environment:
System: FreeBSD sungsung.csie.nctu.edu.tw 4.9-RELEASE FreeBSD 4.9-RELEASE #5: Wed Oct 29 20:13:25 CST 2003 root at sungsung.csie.nctu.edu.tw:/usr/obj/usr/src/sys/SUNGSUNG i386

>Description:
- perl interface to Michiel Jan Laurens de Hoon's C clustering library 
Manual:
  - http://bonsai.ims.u-tokyo.ac.jp/~mdehoon/software/cluster/cluster.pdf
  - http://bonsai.ims.u-tokyo.ac.jp/~mdehoon/software/cluster/cluster3.pdf
Literature:
M.J.L. de Hoon, S. Imoto, J. Nolan, and S. Miyano: "Open Source Clustering
Software", Bioinformatics, 2004, in press.
>How-To-Repeat:
>Fix:

# This is a shell archive.  Save it in a file, remove anything before
# this line, and then unpack it by entering "sh file".  Note, it may
# create directories; files and directories will be owned by you and
# have default permissions.
#
# This archive contains:
#
#	p5-Algorithm-Cluster/
#	p5-Algorithm-Cluster/Makefile
#	p5-Algorithm-Cluster/distinfo
#	p5-Algorithm-Cluster/pkg-descr
#	p5-Algorithm-Cluster/pkg-plist
#
echo c - p5-Algorithm-Cluster/
mkdir -p p5-Algorithm-Cluster/ > /dev/null 2>&1
echo x - p5-Algorithm-Cluster/Makefile
sed 's/^X//' >p5-Algorithm-Cluster/Makefile << 'END-of-p5-Algorithm-Cluster/Makefile'
X# New ports collection makefile for:	p5-Algorithm-Cluster
X# Date created:				Fri May 21 15:21:09 CST 2004
X# Whom:					Cheng-Lung Sung <clsung at dragon2.net>
X#
X# $FreeBSD$
X#
X
XPORTNAME=	Algorithm-Cluster
XPORTVERSION=	1.26
XCATEGORIES=	devel perl5
XMASTER_SITES=	${MASTER_SITE_PERL_CPAN}
XMASTER_SITE_SUBDIR=	Algorithm
XPKGNAMEPREFIX=	p5-
X
XMAINTAINER=	clsung at dragon2.net
XCOMMENT=	A perl interface to C clustering library
X
XPERL_CONFIGURE=	yes
XUSE_REINPLACE=	yes
X
XMAN3=		Algorithm::Cluster.3
X
Xpost-patch:
X		@${REINPLACE_CMD} -e  \
X		"s|${PORTNAME}|Algorithm::Cluster|" ${WRKSRC}/Makefile.PL
X
X.include <bsd.port.pre.mk>
X
X.if ${PERL_LEVEL} < 500601
XIGNORE=		This port requires perl 5.6.x or later. Install lang/perl5 then try again
X.endif
X
X.include <bsd.port.post.mk>
END-of-p5-Algorithm-Cluster/Makefile
echo x - p5-Algorithm-Cluster/distinfo
sed 's/^X//' >p5-Algorithm-Cluster/distinfo << 'END-of-p5-Algorithm-Cluster/distinfo'
XMD5 (Algorithm-Cluster-1.26.tar.gz) = d53ddb38d374a7bcaa43f9879299796e
XSIZE (Algorithm-Cluster-1.26.tar.gz) = 65103
END-of-p5-Algorithm-Cluster/distinfo
echo x - p5-Algorithm-Cluster/pkg-descr
sed 's/^X//' >p5-Algorithm-Cluster/pkg-descr << 'END-of-p5-Algorithm-Cluster/pkg-descr'
XThis module is an interface to the C Clustering Library, a general 
Xpurpose library implementing functions for hierarchical clustering 
X(pairwise simple, complete, average, and centroid linkage), 
Xalong with k-means and k-medians clustering, and 2D self-organizing maps. 
XThe library is distributed along with Cluster 3.0, an enhanced version 
Xof the famous Cluster program originally written by Michael Eisen 
Xwhile at Stanford University. The C clustering library was written 
Xby Michiel de Hoon.
X
XThis module is a Perl wrapper for the C clustering library for 
XcDNA microarray data, Copyright (C) 2002 Michiel Jan Laurens de Hoon.
X
XAuthor: John Nolan <jpnolan at sonic.net>
XWWW: http://search.cpan.org/search?dist=Algorithm-Cluster
END-of-p5-Algorithm-Cluster/pkg-descr
echo x - p5-Algorithm-Cluster/pkg-plist
sed 's/^X//' >p5-Algorithm-Cluster/pkg-plist << 'END-of-p5-Algorithm-Cluster/pkg-plist'
X%%SITE_PERL%%/%%PERL_ARCH%%/Algorithm/Cluster.pm
X%%SITE_PERL%%/%%PERL_ARCH%%/auto/Algorithm/Cluster/Cluster.bs
X%%SITE_PERL%%/%%PERL_ARCH%%/auto/Algorithm/Cluster/Cluster.so
X%%SITE_PERL%%/%%PERL_ARCH%%/auto/Algorithm/Cluster/.packlist
X at dirrm %%SITE_PERL%%/%%PERL_ARCH%%/auto/Algorithm/Cluster
X at unexec rmdir %D/%%SITE_PERL%%/%%PERL_ARCH%%/auto/Algorithm 2>/dev/null || true
X at unexec rmdir %D/%%SITE_PERL%%/%%PERL_ARCH%%/Algorithm 2>/dev/null || true
END-of-p5-Algorithm-Cluster/pkg-plist
exit


>Release-Note:
>Audit-Trail:
>Unformatted: