ports/70271: [new port] biology/finchtv a DNA sequence trace viewer

Fernan Aguero fernan at iib.unsam.edu.ar
Tue Aug 10 18:30:29 UTC 2004


>Number:         70271
>Category:       ports
>Synopsis:       [new port] biology/finchtv a DNA sequence trace viewer
>Confidential:   no
>Severity:       non-critical
>Priority:       low
>Responsible:    freebsd-ports-bugs
>State:          open
>Quarter:        
>Keywords:       
>Date-Required:
>Class:          change-request
>Submitter-Id:   current-users
>Arrival-Date:   Tue Aug 10 18:30:26 GMT 2004
>Closed-Date:
>Last-Modified:
>Originator:     Fernan Aguero
>Release:        FreeBSD 4.10-RELEASE-p2 i386
>Organization:
IIB-UNSAM
>Environment:

FreeBSD pi.iib.unsam.edu.ar 4.10-RELEASE-p2 FreeBSD 4.10-RELEASE #0: Wed May 26 12:56:43 ART 2004 fernan at pi.iib.unsam.edu.ar:/usr/obj/usr/src/sys/PI  i386

	
>Description:
	
	It is a linux binary, it's running fine for me. It comes with
	three DNA sequence trace files (chromatograms) that anyone can
	open to test the program.
	
>How-To-Repeat:
	
	
>Fix:

	



--- finchtv.shar begins here ---
# This is a shell archive.  Save it in a file, remove anything before
# this line, and then unpack it by entering "sh file".  Note, it may
# create directories; files and directories will be owned by you and
# have default permissions.
#
# This archive contains:
#
#	finchtv
#	finchtv/Makefile
#	finchtv/pkg-descr
#	finchtv/distinfo
#	finchtv/pkg-plist
#
echo c - finchtv
mkdir -p finchtv > /dev/null 2>&1
echo x - finchtv/Makefile
sed 's/^X//' >finchtv/Makefile << 'END-of-finchtv/Makefile'
X# vim:ts=8:sw=8:number:nowrap
X# New ports collection makefile for:	FinchTV
X# Date created:		10 Aug 2004
X# Whom:	      		Fernan Aguero <fernan at iib.unsam.edu.ar>
X#
X# $FreeBSD$
X#
X
XPORTNAME=	finchtv
XPORTVERSION=	1.1.0
XCATEGORIES=	biology
XMASTER_SITES=	http://www.geospiza.com/finchtv/download/programs/linux/
XDISTNAME=	${PORTNAME}_${PORTVERSION}
X
XMAINTAINER=	fernan at iib.unsam.edu.ar
XCOMMENT=	A chromatogram trace viewer
X
XUSE_LINUX=	yes
XONLY_FOR_ARCHS=	i386
XNO_BUILD=	yes
X
XDOCS=	License.txt ReleaseNotes.txt FinchTV1-1Help.pdf
X
Xdo-install:
X
X.if !defined(NOPORTDOCS)
X	@ ${MKDIR} ${DOCSDIR}
X
X.for doc in ${DOCS}
X	${INSTALL_MAN} ${WRKSRC}/${doc} ${DOCSDIR}
X.endfor
X
X.endif
X
X	@ ${MKDIR} ${DATADIR}
X	${CP} -R ${WRKSRC}/SampleData/ ${DATADIR}
X
X	${INSTALL_PROGRAM} ${WRKSRC}/finchtv ${PREFIX}/bin
X	${BRANDELF} -t Linux ${PREFIX}/bin/finchtv
X
X.include <bsd.port.mk>
END-of-finchtv/Makefile
echo x - finchtv/pkg-descr
sed 's/^X//' >finchtv/pkg-descr << 'END-of-finchtv/pkg-descr'
XFinchTV is the popular way to view sequence traces on Linux, Mac OSX,
Xand Windows. FinchTV is the only trace viewer that can display an entire
Xtrace in a scalable multi-pane view.
X
XFinchTV reads chromatogram files from the most popular formats. In
Xaddition to displaying a multi-color sequence above the trace, FinchTV
Xdisplays quality values (when available). You can adjust the scale in
Xboth vertical and horizontal directions in either single or multipane
Xviews.
X
XFinchTV can:
Xo print traces (on a single page or control the number of panels printed)
Xo export sequences in FASTA format
Xo open gzipped files
Xo open files with drag and drop
Xo shows additional details about the file (sample ID, run start and stop
X  times, spacing, mobility, lane number, etc.)
X
XWWW: http://www.geospiza.com/finchtv/index.htm
END-of-finchtv/pkg-descr
echo x - finchtv/distinfo
sed 's/^X//' >finchtv/distinfo << 'END-of-finchtv/distinfo'
XMD5 (finchtv_1.1.0.tar.gz) = 8a5cd2333150ab2a4d81f04ed3939d63
XSIZE (finchtv_1.1.0.tar.gz) = 4949840
END-of-finchtv/distinfo
echo x - finchtv/pkg-plist
sed 's/^X//' >finchtv/pkg-plist << 'END-of-finchtv/pkg-plist'
Xbin/finchtv
X%%PORTDOCS%%%%DOCSDIR%%/License.txt
X%%PORTDOCS%%%%DOCSDIR%%/ReleaseNotes.txt
X%%PORTDOCS%%%%DOCSDIR%%/FinchTV1-1Help.pdf
X%%DATADIR%%/78I21_1101.y1.ab1
X%%DATADIR%%/G33P641RB11.scf.gz
X%%DATADIR%%/G33P771FF3.scf
X at dirrm %%DATADIR%%
X%%PORTDOCS%%@dirrm %%DOCSDIR%%
END-of-finchtv/pkg-plist
exit
--- finchtv.shar ends here ---

>Release-Note:
>Audit-Trail:
>Unformatted:



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