ports/56043: ports/biology/clustalw patch update

David A.Bader dbader at ece.unm.edu
Wed Aug 27 15:20:22 UTC 2003


>Number:         56043
>Category:       ports
>Synopsis:       ports/biology/clustalw patch update
>Confidential:   no
>Severity:       non-critical
>Priority:       low
>Responsible:    freebsd-ports-bugs
>State:          open
>Quarter:        
>Keywords:       
>Date-Required:
>Class:          maintainer-update
>Submitter-Id:   current-users
>Arrival-Date:   Wed Aug 27 08:20:20 PDT 2003
>Closed-Date:
>Last-Modified:
>Originator:     David A. Bader
>Release:        FreeBSD 4.8-STABLE i386
>Organization:
University of New Mexico 
>Environment:
System: FreeBSD tularosa.eece.unm.edu 4.8-STABLE FreeBSD 4.8-STABLE #1: Mon Aug 25 15:45:25 MDT 2003 root at tularosa.eece.unm.edu:/usr/obj/usr/local/src/sys/tularosa-smni i386


	
>Description:
	
>How-To-Repeat:
	
>Fix:

 Please replace the patch file 
/usr/ports/biology/clustalw/files/patch-ac 
with the following patch-ac:

begin 644 patch-ac
M+2TM(&EN=&5R9F%C92YC+F]R:6<)5&AU($9E8B`Q,R`Q-3HQ-SHS,R`R,#`S
M"BLK*R!I;G1E<F9A8V4N8PE4:'4 at 1F5B(#$S(#$U.C(V.C(X(#(P,#,*0$`@
M+3$Q,S(L-R`K,3$S,BPW($!`"B`)+RH at 861D960@9F]R($9I;&4 at 4WES=&5M
M(%-T86YD87)D<R`@+2!&<F%N8V]I<R`J+PH@"7!A=&@Q/2AC:&%R("HI8VMA
M;&QO8R at H<W1R;&5N*'!A=&@I*S8T*2IS:7IE;V8H8VAA<BDI.PH@"7-T<F-P
M>2AP871H,2QP871H*3L*+0ES=')C870H<&%T:#$L(B]U<W(O<VAA<F4O8VQU
M<W1A;'@Z+W5S<B]L;V-A;"]S:&%R92]C;'5S=&%L>"(I.R`**PES=')C870H
M<&%T:#$L1$%4041)4BD[(`H@"B`@("`@("`@(&QF/2AS:6YT*7-T<FQE;BAF
M;F%M92D["B`@("`@("`@(&1E8CUP871H,3L*0$`@+3$R,C0L-R`K,3(R-"PW
M($!`"B`)"0D):68H<W1R<W1R*'1E;7`L(&AE;'!?;6%R:V5R*2E["B`)"0D)
M("`):68H=7-E;65N=2D@>PH@"0D)"0D)9G!R:6YT9BAS=&1O=70L(EQN(BD[
M"BT)"0D)("`@(`D)9V5T<W1R*")0<F5S<R!;4D5455).72!T;R!C;VYT:6YU
M92(L;&EN,BD["BL)"0D)("`@(`D)9V5T<W1R*")0<F5S<R!;4D5455).72!T
M;R!C;VYT:6YU92(L;&EN,BQ-05A,24Y%*3L*(`D)"0D@(`E]"B`)"0D)"69C
M;&]S92AH96QP7V9I;&4I.PH@"0D)"0ER971U<FX["D!`("TQ,C,V+#<@*S$R
M,S8L-R!`0`H@"0D)("`@("`@(&EF*'5S96UE;G4I('L*(`D)"2`@("`@("`@
M("!I9BAN;&EN97,@/CT at 4$%'15],14XI('L*(`D)"0D@("`@(`D@("!F<')I
M;G1F*'-T9&]U="PB7&XB*3L*+0D)"2`)("`)("`@9V5T<W1R*")0<F5S<R!;
M4D5455).72!T;R!C;VYT:6YU92!O<B`@6"`@=&\@<W1O<"(L;&EN,BD["BL)
M"0D@"2`@"2`@(&=E='-T<B at B4')E<W, at 6U)%5%523ET@=&\@8V]N=&EN=64@
M;W(@(%@@('1O('-T;W`B+&QI;C(L34%83$E.12D["B`)"0D)("`)("`@:68H
M=&]U<'!E<B at J;&EN,BD@/3T@)U at G*2!["B`)"0D)"0D@("!F8VQO<V4H:&5L
M<%]F:6QE*3L*(`D)"0D)"2`@(')E='5R;CL*0$`@+3$R-#@L-R`K,3(T."PW
M($!`"B`)"0E]"B`)"0EI9BAU<V5M96YU*2!["B`)"0D)9G!R:6YT9BAS=&1O
M=70L(EQN(BD["BT)"0D)9V5T<W1R*")0<F5S<R!;4D5455).72!T;R!C;VYT
M:6YU92(L;&EN,BD["BL)"0D)9V5T<W1R*")0<F5S<R!;4D5455).72!T;R!C
M;VYT:6YU92(L;&EN,BQ-05A,24Y%*3L*(`D)"7T*(`D)"69C;&]S92AH96QP
M7V9I;&4I.PH@"0E]"D!`("TQ,C at W+#<@*S$R.#<L-R!`0`H@("`@("`@("`@
M("`@("`@("LK;FQI;F5S.PH@("`@("`@("`@("`@("`@(&EF*&YL:6YE<R`^
M/2!004=%7TQ%3BD@>PH@("`@("`@("`@("`@("`@("`@("`@("`@9G!R:6YT
M9BAS=&1O=70L(EQN(BD["BT@("`@("`@("`@("`@("`@("`@("`@("!G971S
M='(H(E!R97-S(%M215154DY=('1O(&-O;G1I;G5E(&]R("!8("!T;R!S=&]P
M(BQL:6XR*3L**R`@("`@("`@("`@("`@("`@("`@("`@(&=E='-T<B at B4')E
M<W, at 6U)%5%523ET@=&\@8V]N=&EN=64@;W(@(%@@('1O('-T;W`B+&QI;C(L
M34%83$E.12D["B`@("`@("`@("`@("`@("`@("`@("`@("!I9BAT;W5P<&5R
M*"IL:6XR*2`]/2`G6"<I('L*("`@("`@("`@("`@("`@("`@("`@("`@("`@
M("`@("`@9F-L;W-E*&9I;&4I.PH@("`@("`@("`@("`@("`@("`@("`@("`@
M("`@("`@("!R971U<FX["D!`("TQ,CDX+#<@*S$R.3 at L-R!`0`H@("`@("`@
M("!]"B`@("`@("`@(&9C;&]S92AF:6QE*3L*("`@("`@("`@9G!R:6YT9BAS
M=&1O=70L(EQN(BD["BT@("`@("`@(&=E='-T<B at B4')E<W, at 6U)%5%523ET@
M=&\@8V]N=&EN=64B+&QI;C(I.PHK("`@("`@("!G971S='(H(E!R97-S(%M2
M15154DY=('1O(&-O;G1I;G5E(BQL:6XR+$U!6$Q)3D4I.PH@?0H@"B`*0$`@
M+3$W-#<L-R`K,3<T-RPW($!`"B`@("`@("`@($9)3$4@*FEN9FEL93L*(`H@
M("`@("`@("!I9BAU<V5M96YU*0HM("`@("`@("`@("`@("`@(&=E='-T<B at B
M16YT97(@;F%M92!O9B!T:&4@;6%T<FEX(&9I;&4B+&QI;C(I.PHK("`@("`@
M("`@("`@("`@(&=E='-T<B at B16YT97(@;F%M92!O9B!T:&4@;6%T<FEX(&9I
M;&4B+&QI;C(L34%83$E.12D["B`@("`@("`@(&5L<V4*("`@("`@("`@("`@
M("`@("!S=')C<'DH;&EN,BQS='(I.PH@"D!`("TQ-S<S+#<@*S$W-S,L-R!`
M0`H@("`@("`@("!&24Q%("II;F9I;&4["B`*("`@("`@("`@:68H=7-E;65N
M=2D*+2`@("`@("`@("`@("`@("!G971S='(H(D5N=&5R(&YA;64@;V8@=&AE
M(&UA=')I>"!F:6QE(BQL:6XR*3L**R`@("`@("`@("`@("`@("!G971S='(H
M(D5N=&5R(&YA;64@;V8@=&AE(&UA=')I>"!F:6QE(BQL:6XR+$U!6$Q)3D4I
M.PH@("`@("`@("!E;'-E"B`@("`@("`@("`@("`@("`@<W1R8W!Y*&QI;C(L
M<W1R*3L*(`I`0"`M,C$W-BPW("LR,3<V+#<@0$`*(`D)"7-T<F-P>2AL;V-A
M;%]P<F]M<'0L(EQN7&Y%;G1E<B!N97<@;F%M92!T;R!A=F]I9"!O=F5R=W)I
M=&EN9R`B*3L*(`D)"7-T<F-A="AL;V-A;%]P<F]M<'0L(B!;)7-=.B`B*3L@
M("`@("`@("`@"B`)"0EF<')I;G1F*'-T9&]U="QL;V-A;%]P<F]M<'0L9FEL
M95]N86UE*3L*+0D)"6=E=',H=&5M<"D["BL)"0EF9V5T<RAT96UP+$9)3$5.
M04U%3$5.*S$L<W1D:6XI.R!I9B at J=&5M<"`A/2!%3U,I('1E;7!;<W1R;&5N
M*'1E;7`I+3%=/45/4SL*(`D)"6EF*"IT96UP("$]($5/4RD@<W1R8W!Y*&9I
M;&5?;F%M92QT96UP*3L*(`D)?0H@"7T*0$`@+3(Q.#0L-R`K,C$X-"PW($!`
M"B`)"7-T<F-P>2AL;V-A;%]P<F]M<'0L<')O;7!T*3L*(`D)<W1R8V%T*&QO
M8V%L7W!R;VUP="PB(%LE<UTZ("(I.R`@("`@("`@("`*(`D)9G!R:6YT9BAS
M=&1O=70L;&]C86Q?<')O;7!T+&9I;&5?;F%M92D["BT)"6=E=',H=&5M<"D[
M"BL)"69G971S*'1E;7`L1DE,14Y!345,14XK,2QS=&1I;BD[(&EF*"IT96UP
M("$]($5/4RD@=&5M<%MS=')L96XH=&5M<"DM,5T]14]3.PH@"0EI9B at J=&5M
M<"`A/2!%3U,I('-T<F-P>2AF:6QE7VYA;64L=&5M<"D["B`)?0H@"D!`("TR
M,S at U+#<@*S(S.#4L-R!`0`H@"0EI9B`H=7-E;65N=2D*("`@("`@("`@("`@
M(`EF<')I;G1F*'-T9&]U="PB7&Y5<V4@=&AE(&5X:7-T:6YG($=5241%(%12
M144 at 9FEL92P@("5S("`H>2]N*2`_(%MY73H@(BP*("`@("`@("`@("`@("`@
M("`@("`@("`@("`@("`@("`@("`@("`@("`@("!T<F5E7VYA;64I.PHM("`@
M("`@("`@("`@("`@(&=E=',H=&5M<"D["BL@("`@("`@("`@("`@("`@9F=E
M=',H=&5M<"Q-05A,24Y%+'-T9&EN*3L@:68H*G1E;7`@(3T at 14]3*2!T96UP
M6W-T<FQE;BAT96UP*2TQ73U%3U,["B`@("`@("`@("`@("`@("`@:68H*G1E
M;7`@(3T@)VXG("8F("IT96UP("$]("=.)RD@>PH@("`@("`@("`@("`@("`@
M("`@("!S=')C<'DH<&AY;&EP7VYA;64L=')E95]N86UE*3L*("`@("`@("`@
M("`@("`@("`@("`@=7-E7W1R964@/2!44E5%.PI`0"`M,C8Q-RPW("LR-C$W
M+#<@0$`*(`H@("`@("`@("`@("`@9G!R:6YT9BAS=&1O=70L(EQN16YT97(@
M82!N86UE(&9O<B!T:&4 at 9W5I9&4@=')E92!F:6QE(%LE<UTZ("(L"B`@("`@
M("`@("`@("`@("`@("`@("`@("`@("`@("`@("`@("`@("`@("`@<&AY;&EP
M7VYA;64I.PHM("`@("`@("`@("`@("`@(`EG971S*'1E;7`I.PHK"0D)9F=E
M=',H=&5M<"Q-05A,24Y%+'-T9&EN*3L@:68H*G1E;7`@(3T at 14]3*2!T96UP
M6W-T<FQE;BAT96UP*2TQ73U%3U,["B`@("`@("`@("`@("`@("`@"6EF*"IT
M96UP("$]($5/4RD*("`@("`@("`@("`@("`@("`@("`@("`@(`ES=')C<'DH
M<&AY;&EP7VYA;64L=&5M<"D["B`@("`@("`@(`E]"D!`("TR-S$Y+#<@*S(W
M,3DL-R!`0`H@(V5N9&EF"B`@("`@("`@("`@("`)9G!R:6YT9BAS=&1O=70L
M(EQN57-E('1H92!E>&ES=&EN9R!'54E$12!44D5%(&9I;&4 at 9F]R(%!R;V9I
M;&4@,2P@("5S("`H>2]N*2`_(%MY73H@(BP*("`@("`@("`@("`@("`@("`@
M("`@("`@("`@("`@("`@("`@("`@("`@("!T<F5E7VYA;64I.PHM("`@("`@
M("`@("`@("`@(&=E=',H=&5M<"D["BL@("`@("`@("`@("`@("`@9F=E=',H
M=&5M<"Q-05A,24Y%+'-T9&EN*3L@:68H*G1E;7`@(3T at 14]3*2!T96UP6W-T
M<FQE;BAT96UP*2TQ73U%3U,["B`@("`@("`@("`@("`@("`@:68H*G1E;7`@
M(3T@)VXG("8F("IT96UP("$]("=.)RD@>PH@("`@("`@("`@("`@("`@("`@
M("!S=')C<'DH<#%?=')E95]N86UE+'1R965?;F%M92D["B`@("`@("`@("`@
M("`@("`@("`@('5S95]T<F5E,2`](%12544["D!`("TR-S0U+#<@*S(W-#4L
M-R!`0`H@(V5N9&EF"B`@("`@("`@("`@("`)9G!R:6YT9BAS=&1O=70L(EQN
M57-E('1H92!E>&ES=&EN9R!'54E$12!44D5%(&9I;&4 at 9F]R(%!R;V9I;&4@
M,BP@("5S("`H>2]N*2`_(%MY73H@(BP*("`@("`@("`@("`@("`@("`@("`@
M("`@("`@("`@("`@("`@("`@("`@("!T<F5E7VYA;64I.PHM("`@("`@("`@
M("`@("`@(&=E=',H=&5M<"D["BL@("`@("`@("`@("`@("`@9F=E=',H=&5M
M<"Q-05A,24Y%+'-T9&EN*3L@:68H*G1E;7`@(3T at 14]3*2!T96UP6W-T<FQE
M;BAT96UP*2TQ73U%3U,["B`@("`@("`@("`@("`@("`@:68H*G1E;7`@(3T@
M)VXG("8F("IT96UP("$]("=.)RD@>PH@("`@("`@("`@("`@("`@("`@("!S
M=')C<'DH<#)?=')E95]N86UE+'1R965?;F%M92D["B`@("`@("`@("`@("`@
M("`@("`@('5S95]T<F5E,B`](%12544["D!`("TT,C`S+#<@*S0R,#,L-R!`
M0`H@("!I9BAU<V5M96YU*2!["B`@("`@9G!R:6YT9BAS=&1O=70L(EQN16YT
M97(@82!N86UE(&9O<B!T:&4@<&%R86UE=&5R(&]U='!U="!F:6QE(%LE<UTZ
M("(L"B`)("`@('!A<FYA;64I.PHM("`@(&=E=',H=&5M<"D["BL@("`@9F=E
M=',H=&5M<"Q&24Q%3D%-14Q%3BLQ+'-T9&EN*3L@:68H*G1E;7`@(3T at 14]3
M*2!T96UP6W-T<FQE;BAT96UP*2TQ73U%3U,["B`@("`@:68H*G1E;7`@(3T@
G14]3*0H@("`@("`@<W1R8W!Y*'!A<FYA;64L=&5M<"D["B`@('T*
`
end

--
David A. Bader                                  Office: 505-277-6724
Associate Professor and Regents' Lecturer       FAX:    505-277-1439
Electrical and Computer Engineering Department
University of New Mexico                          dbader at ece.unm.edu
Albuquerque, NM  87131                http://www.ece.unm.edu/~dbader
>Release-Note:
>Audit-Trail:
>Unformatted:



More information about the freebsd-ports-bugs mailing list